Contig 001853:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF034F21Sequence573001853 (8)gb|AIS71904.1|2e-96mitochondrial succinyl-CoA ligase ADP-forming subunit beta [Nicotiana tabacum]716014064 (5)ref|XP_011083046.1|7e-117PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Sesam
JMFF035E17Sequence574001853 (8)ref|XP_009621519.1|1e-99PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Nicot757014064 (5)ref|XP_011083046.1|2e-114PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Sesam
JMFF048K04Sequence569001853 (8)gb|AIS71904.1|6e-67mitochondrial succinyl-CoA ligase ADP-forming subunit beta [Nicotiana tabacum]
JMFN038A07Sequence643001853 (8)gb|AIS71904.1|1e-116mitochondrial succinyl-CoA ligase ADP-forming subunit beta [Nicotiana tabacum]
JMFS011H09Sequence619001853 (8)gb|ABC01911.1|7e-97succinyl CoA ligase beta subunit-like protein [Solanum tuberosum]
JMFS020E09Sequence621001853 (8)gb|ABC01911.1|2e-97succinyl CoA ligase beta subunit-like protein [Solanum tuberosum]
JMSF027F05Sequence646001853 (8)gb|AIS71904.1|9e-123mitochondrial succinyl-CoA ligase ADP-forming subunit beta [Nicotiana tabacum]764014064 (5)ref|XP_009790645.1|5e-127PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Nicot
JMSF040F04Sequence677001853 (8)gb|AIS71904.1|6e-120mitochondrial succinyl-CoA ligase ADP-forming subunit beta [Nicotiana tabacum]916014064 (5)gb|ABA46791.1|3e-141succinyl-CoA ligase beta subunit-like protein [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF027F05+ AT
                      ____________________________________________________________
consensus AT
 
. : . : . : . : . : . :
JMSF040F04+ CGTAATGCCTTTAAAAACATCAATAGGTACCTTTATAATCATATCAGGGAACT
JMSF027F05+ CTTCATCCGTAATGCCTTTAAAAACATCAATAGGTACCTTTATAATCATATCAGGGAACT
JMFN038A07+ TTAAAAACATCAATAGGTACCTTTATAATCATATCAGGGAACT
                      ____________________________________________________________
consensus CTTCATCCGTAATGCCTTTAAAAACATCAATAGGTACCTTTATAATCATATCAGGGAACT
 
. : . : . : . : . : . :
JMFF034F21+ CTGCAGGCAATAATAAGAGGACCAG
JMSF040F04+ TTTCTGCCAGGTCTTCAATACTGGTTCCTCCCTTCCTGCAGGCAATAATAAGAGGACCAG
JMFS011H09+ GCCAGATCTTCAATACTGGTTCCTCCTTTCCTGCAGGCAATGATAAGAGGACCAG
JMFS020E09+ TGCCAGATCTTCAATACTGGTTCCTCCTTTCCTGCAGGCAATGATAAGAGGACCAG
JMSF027F05+ TTTCTGCCAGGTCTTCAATACTGGTTCCTCCCTTCCTGCAGGCAATAATAAGAGGACCAG
JMFF035E17+ TTCCTCCCTTCCTGCAGGCAATAATAAGAGGACCAG
JMFN038A07+ TTTTTGCCAGGTCTTCAATACTGGTTCCTCCCTTCCTGCAGGCAATAATAAGAGGACCAG
                      ____________________________________________________________
consensus TTTCTGCCAGGTCTTCAATACTGGTTCCTCCCTTCCTGCAGGCAATAATAAGAGGACCAG
 
. : . : . : . : . : . :
JMFF034F21+ CAGATGCACGGTCAAGAATAATGGAGAAGTACATTTCATTGACTAAAGACAGTTTTTCAC
JMSF040F04+ CAGATGCACGGTCAAGAATAATGGAGAAGTACATTTCATTGACTAAAGACAGTTTTTCAC
JMFS011H09+ CACTTGCACGATCAAGAATAATGGAGAAATACATCTCATTGACTAATGAAAGCTTTTCAG
JMFS020E09+ CACTTGCACGATCAAGAATAATGGAGAAATACATCTCATTGACTAATGAAAGCTTTTCAG
JMSF027F05+ CAGATGCACGGTCAAGAATAATGGAGAAGTACATTTCATTGACTAAAGACAGTTTTTCAC
JMFF035E17+ CAGATGCACGGTCAAGAATAATGGAGAAGTACATTTCATTGACTAAAGACAGTTTTTCAC
JMFN038A07+ CAGATGCACGGTCAAGAATAATGGAGAAGTACATTTCATTGACTAAAGACAGTTTTTCAC
                      ____________________________________________________________
consensus CAGATGCACGGTCAAGAATAATGGAGAAGTACATTTCATTGACTAAAGACAGTTTTTCAC
 
. : . : . : . : . : . :
JMFF034F21+ ACAGATAAACCTTGCTGACAATTTTCCCTTGGTCCCCAGTTTGTTTAGTAACAAGTATCT
JMSF040F04+ ACAGATAAACCTTGCTGACAATTTTCCCTTGGTCCCCAGTTTGTTTAGTAACAAGTATCT
JMFS011H09+ CAAGATAAACCTTGCTGACGATTTTCCCTTCGGGTCCAGTTTGTTTAGTAACAAGTATCT
JMFS020E09+ CAAGATAAACCTTGCTGACGATTTTCCCTTCGGGTCCAGTTTGTTTAGTAACAAGTATCT
JMSF027F05+ ACAGATAAACCTTGCTGACAATTTTCCCTTGGTCCCCAGTTTGTTTAGTAACAAGTATCT
JMFF035E17+ ACAGATAAACCTTGCTGACAATTTTCCCTTGGTCCCCAGTTTGTTTAGTAACAAGTATCT
JMFF048K04+ CCCTTGGTCCCCAGTTTGTTTAGTAACAGGTATTT
JMFN038A07+ ACAGATAAACCTTGCTGACAATTTTCCCTTGGTCCCCAGTTTGTTTAGTAACAAGTATCT
                      ____________________________________________________________
consensus ACAGATAAACCTTGCTGACAATTTTCCCTTGGTCCCCAGTTTGTTTAGTAACAAGTATCT
 
. : . : . : . : . : . :
JMFF034F21+ GCCCAAGCATCTTTGCTGCAATATCTTCAGCTTGATCAGCCTTGGCAATATGAACTCCAC
JMSF040F04+ GCCCAAGCATCTTTGCTGCAATATCTTCAGCTTGATCAGCCTTGGCAATATGAACTCCAC
JMFS011H09+ GTCCAAGCATCTTCTCAGTTATTTCTTCTGCTCGAGTAGCATAGGCAATATGGACTCCAC
JMFS020E09+ GTCCAAGCATCTTCTCAGTTATTTCTTCTGCTCGAGTAGCATAGGCAATATGGACTCCAC
JMSF027F05+ GCCCAAGCATCTTTGCTGCAATATCTTCAGCTTGATCAGCCTTGGCAATATGAACTCCAC
JMFF035E17+ GCCCAAGCATCTTTGCTGCAATATCTTCAGCTTGATCAGCCTTGGCAATATGAACTCCAC
JMFF048K04+ GCCCAAGCATCTTTGCTGCAATATCTTCAGCTTGATCAGCCTTGGCAATAGGAACTCCAC
JMFN038A07+ GCCCAAGCATCTTTGCTGCAATATCTTCAGCTTGATCAGCCTTGGCAATATGAACTCCAC
                      ____________________________________________________________
consensus GCCCAAGCATCTTTGCTGCAATATCTTCAGCTTGATCAGCCTTGGCAATATGAACTCCAC
 
. : . : . : . : . : . :
JMFF034F21+ CTTTAAATCCATTTTTGAATGTCCCCAGACCCCTTCCACCAGCTAGCACTTGAGACTTCA
JMSF040F04+ CTTTAAATCCATTTTTGAATGTCCCCAGACCCCTTCCACCAGCTAGCACTTGAGACTTCA
JMFS011H09+ CTAGAAATCCATTTTTGAATGTACCCAAGCCTCTTCCACCAGCTAGCACCTGGGACTTTA
JMFS020E09+ CTAGAAATCCATTTTTGAATGTACCCAAGCCTCTTCCACCAGCTAGCACCTGGGACTTTA
JMSF027F05+ CTTTAAATCCATTTTTGAATGTCCCCAGACCCCTTCCACCAGCCAGCACTTGAGACTTCA
JMFF035E17+ CTTTAAATCCATTTTTGAATGTCCCCAGACCCCTTCCACCAGCTAGCACTTGAGACTTCA
JMFF048K04+ CTTTAAATCCATTTTTGAATGTCCCCAGACCCCTTCCACCAGTTAGCACTGGAGGCTTCA
JMFN038A07+ CTTTAAATCCATTTTTGAATGTCCCCAGACCCCTTCCACCAGCTAGCACTTGAGACTTCA
                      ____________________________________________________________
consensus CTTTAAATCCATTTTTGAATGTCCCCAGACCCCTTCCACCAGCTAGCACTTGAGACTTCA
 
. : . : . : . : . : . :
JMFF034F21+ CAACAATCTCATTTTCATTGGGGAATACATCCTGAATCGCCTTTTTCACTTCTCCAATGG
JMSF040F04+ CAACAATCTCATTTTCATTGGGGAATACATCCTGAATCGCCTTTTTCACTTCTCCAATGG
JMFS011H09+ CAACAATCTCATCTTCTTTGGGGAATACATCTTGCATCGCCTTTTTCACTTGTTCAATGG
JMFS020E09+ CAACAATCTCATCTTCTTTGGGGAATACATCTTGCATCGCCTTTTTCACTTGTTCAATGG
JMSF027F05+ CAACAATCTCATTTTCATTGGGGAATACATCCTGAATCGCCTTTTTCACTTCTCCAATGG
JMFF035E17+ CAACAATCTCATTTTCATTGGGGAATACATCCTGAATCGCCTTTTTCACTTCTCCAATGG
JMFF048K04+ CAACAATCTCATTTTCATGGGGGAATACATCCTGATTCGCCTTTTTCACTTCTCCCTTGG
JMFN038A07+ CAACAATCTCATTTTCATTGGGGAATACATCCTGAATCGCCTTTTTCACTTCTCCAATGG
                      ____________________________________________________________
consensus CAACAATCTCATTTTCATTGGGGAATACATCCTGAATCGCCTTTTTCACTTCTCCAATGG
 
. : . : . : . : . : . :
JMFF034F21+ AACCAACGGCAACACCCTTTGGGACATTGATCCCATATTTTCCCATCAACTGAGCACCCT
JMSF040F04+ AACCAACGGCAACACCCTTTGGGACATTGATCCCATATTTTCCCATCAACTGAGCACCCT
JMFS011H09+ AACCAACAGCGACACCTTTCGGGACATTGATCCCATATTTGCCCATCAAATCAGCTCCCT
JMFS020E09+ AACCAACAGCGACACCTTTCGGGACATTGATCCCATATTTGCCCATCAAATCAGCTCCCT
JMSF027F05+ AACCAACGGCAACACCCTTTGGGACATTGATCCCATATTTTCCCATCAACTGAGCACCCT
JMFF035E17+ AACCAACGGCAACACCCTTTGGGACATTGATCCCATATTTTCCCATCAACTGAGCACCCT
JMFF048K04+ ACTCAACGGCAACACCCTTGGGTACATTTATCCCATATTTTCCCATCAACTGAGCACCCT
JMFN038A07+ AACCAACGGCAACACCCTTTGGGACATTGATCCCATATTTTCCCATCAACTGAGCACCCT
                      ____________________________________________________________
consensus AACCAACGGCAACACCCTTTGGGACATTGATCCCATATTTTCCCATCAACTGAGCACCCT
 
. : . : . : . : . : . :
JMFF034F21+ GGTATTCATGGATATTGAGGCGGCGGAGCTGTTGTTGCTGCCACTTCCCGGCGACGGAAA
JMSF040F04+ GGTATTCATGGATATTGAGGCGGCGGAGCTGTTGTTGCTGCCACTTCCCGGCGACGGAAA
JMFS011H09+ GATATTCGTGGATGTTGAGGCGGCGGAGCTGCTGCTGTTGCCATTTTCCGGCGATGGAGA
JMFS020E09+ GATATTCGTGGATGTTGAGGCGGCGGAGCTGCTGCTGTTGCCATTTTCCGGCGATGGAGA
JMSF027F05+ GGTATTCATGGATATTGAGGCGGCGGAGCTGTTGTTGCTGCCACTTCCCGGCGACGGAAA
JMFF035E17+ GGTATTCATGGATATTGAGGCGGCGGAGCTGTTGTTGCTGCCACTTCCCGGCGACGGAAA
JMFF048K04+ GGTATTCATGGATATTGAGGCGGCGGAGCTGTTGTTGGTGCCACTTCCCGGCGACGGAAA
JMFN038A07+ GGTATTCATGGATATTGAGGCGGCGGAGCTGTTGTTGCTGCCACTTCCCGGCGACGGAAA
                      ____________________________________________________________
consensus GGTATTCATGGATATTGAGGCGGCGGAGCTGTTGTTGCTGCCACTTCCCGGCGACGGAAA
 
. : . : . : . : . : . :
JMFF034F21+ GCGAGCGGCCGGCGAGTTTTCCAAGCAATCCTCTCACCATTCTTCAGATCCTAAA
JMSF040F04+ GCGAGCGGCCGGCGAGTTTTCCAAGCAATCCTCTCACCATTCTTCAGATCCTAAA
JMFS011H09+ GTGAGCGAGTGGCGATTTTTGCCAACAATCCTCTCACCATTATTCGGATTCTAAA
JMFS020E09+ GTGAGCGAGTGGCGATTTTTGCCAACAATCCTCTCACCATTATTCGGATTCTAAA
JMSF027F05+ GCGAGCGGCCGGCGAGTTTTCCAAGCAATCCTCTCACCATTCTTCAGATCCTAAACACGA
JMFF035E17+ GCGAGCGGCCGGCGAGTTTTCCAAGCAATCCTCTCACCATTCTTCAGATCCTAAACACGA
JMFF048K04+ GCGAGCGGCCGGCGAGTTTTCCAAGCAATCCTCTCACCATTCTTCAGATCCTAAACACGA
JMFN038A07+ GCGAGCGGCCGGCGAGTTTTCCAAGCAATCCTCTCACCATTCTTCAGATCCTAAACACGA
                      ____________________________________________________________
consensus GCGAGCGGCCGGCGAGTTTTCCAAGCAATCCTCTCACCATTCTTCAGATCCTAAACACGA
 
. : . : . : . : . : . :
JMSF027F05+ TTGAATCGAAAGAGTATAGAGCTGTTTAAGCGATCGGAGAGCT
JMFF035E17+ TTGAATCGAAAGAGTATAGAGCTGTTTAAGCGATCGGAGAGCTATGAAAGTATGAAGC
JMFF048K04+ TGGAATCGAAAGAGT
JMFN038A07+ TTGAATCGAAAGAGTATAGAGCTGTTTAAGCGATCGGAGAGCTATGAAAGTATGAAGCAG
                      ____________________________________________________________
consensus TTGAATCGAAAGAGTATAGAGCTGTTTAAGCGATCGGAGAGCTATGAAAGTATGAAGCAG