Contig 001853:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF034F21Sequence573001853 (8)gb|AIS71904.1|2e-96mitochondrial succinyl-CoA ligase ADP-forming subunit beta [Nicotiana tabacum]716014064 (5)ref|XP_011083046.1|7e-117PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Sesam
JMFF035E17Sequence574001853 (8)ref|XP_009621519.1|1e-99PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Nicot757014064 (5)ref|XP_011083046.1|2e-114PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Sesam
JMFF048K04Sequence569001853 (8)gb|AIS71904.1|6e-67mitochondrial succinyl-CoA ligase ADP-forming subunit beta [Nicotiana tabacum]
JMFN038A07Sequence643001853 (8)gb|AIS71904.1|1e-116mitochondrial succinyl-CoA ligase ADP-forming subunit beta [Nicotiana tabacum]
JMFS011H09Sequence619001853 (8)gb|ABC01911.1|7e-97succinyl CoA ligase beta subunit-like protein [Solanum tuberosum]
JMFS020E09Sequence621001853 (8)gb|ABC01911.1|2e-97succinyl CoA ligase beta subunit-like protein [Solanum tuberosum]
JMSF027F05Sequence646001853 (8)gb|AIS71904.1|9e-123mitochondrial succinyl-CoA ligase ADP-forming subunit beta [Nicotiana tabacum]764014064 (5)ref|XP_009790645.1|5e-127PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Nicot
JMSF040F04Sequence677001853 (8)gb|AIS71904.1|6e-120mitochondrial succinyl-CoA ligase ADP-forming subunit beta [Nicotiana tabacum]916014064 (5)gb|ABA46791.1|3e-141succinyl-CoA ligase beta subunit-like protein [Solanum tuberosum]

Alignment

This contig is upended


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JMSF027F05+                                                                     AT
                      ____________________________________________________________
consensus                                                                       AT
 
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JMSF040F04+                  CGTAATGCCTTTAAAAACATCAATAGGTACCTTTATAATCATATCAGGGAACT
JMSF027F05+           CTTCATCCGTAATGCCTTTAAAAACATCAATAGGTACCTTTATAATCATATCAGGGAACT
JMFN038A07+                            TTAAAAACATCAATAGGTACCTTTATAATCATATCAGGGAACT
                      ____________________________________________________________
consensus             CTTCATCCGTAATGCCTTTAAAAACATCAATAGGTACCTTTATAATCATATCAGGGAACT
 
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JMFF034F21+                                              CTGCAGGCAATAATAAGAGGACCAG
JMSF040F04+           TTTCTGCCAGGTCTTCAATACTGGTTCCTCCCTTCCTGCAGGCAATAATAAGAGGACCAG
JMFS011H09+                GCCAGATCTTCAATACTGGTTCCTCCTTTCCTGCAGGCAATGATAAGAGGACCAG
JMFS020E09+               TGCCAGATCTTCAATACTGGTTCCTCCTTTCCTGCAGGCAATGATAAGAGGACCAG
JMSF027F05+           TTTCTGCCAGGTCTTCAATACTGGTTCCTCCCTTCCTGCAGGCAATAATAAGAGGACCAG
JMFF035E17+                                   TTCCTCCCTTCCTGCAGGCAATAATAAGAGGACCAG
JMFN038A07+           TTTTTGCCAGGTCTTCAATACTGGTTCCTCCCTTCCTGCAGGCAATAATAAGAGGACCAG
                      ____________________________________________________________
consensus             TTTCTGCCAGGTCTTCAATACTGGTTCCTCCCTTCCTGCAGGCAATAATAAGAGGACCAG
 
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JMFF034F21+           CAGATGCACGGTCAAGAATAATGGAGAAGTACATTTCATTGACTAAAGACAGTTTTTCAC
JMSF040F04+           CAGATGCACGGTCAAGAATAATGGAGAAGTACATTTCATTGACTAAAGACAGTTTTTCAC
JMFS011H09+           CACTTGCACGATCAAGAATAATGGAGAAATACATCTCATTGACTAATGAAAGCTTTTCAG
JMFS020E09+           CACTTGCACGATCAAGAATAATGGAGAAATACATCTCATTGACTAATGAAAGCTTTTCAG
JMSF027F05+           CAGATGCACGGTCAAGAATAATGGAGAAGTACATTTCATTGACTAAAGACAGTTTTTCAC
JMFF035E17+           CAGATGCACGGTCAAGAATAATGGAGAAGTACATTTCATTGACTAAAGACAGTTTTTCAC
JMFN038A07+           CAGATGCACGGTCAAGAATAATGGAGAAGTACATTTCATTGACTAAAGACAGTTTTTCAC
                      ____________________________________________________________
consensus             CAGATGCACGGTCAAGAATAATGGAGAAGTACATTTCATTGACTAAAGACAGTTTTTCAC
 
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JMFF034F21+           ACAGATAAACCTTGCTGACAATTTTCCCTTGGTCCCCAGTTTGTTTAGTAACAAGTATCT
JMSF040F04+           ACAGATAAACCTTGCTGACAATTTTCCCTTGGTCCCCAGTTTGTTTAGTAACAAGTATCT
JMFS011H09+           CAAGATAAACCTTGCTGACGATTTTCCCTTCGGGTCCAGTTTGTTTAGTAACAAGTATCT
JMFS020E09+           CAAGATAAACCTTGCTGACGATTTTCCCTTCGGGTCCAGTTTGTTTAGTAACAAGTATCT
JMSF027F05+           ACAGATAAACCTTGCTGACAATTTTCCCTTGGTCCCCAGTTTGTTTAGTAACAAGTATCT
JMFF035E17+           ACAGATAAACCTTGCTGACAATTTTCCCTTGGTCCCCAGTTTGTTTAGTAACAAGTATCT
JMFF048K04+                                    CCCTTGGTCCCCAGTTTGTTTAGTAACAGGTATTT
JMFN038A07+           ACAGATAAACCTTGCTGACAATTTTCCCTTGGTCCCCAGTTTGTTTAGTAACAAGTATCT
                      ____________________________________________________________
consensus             ACAGATAAACCTTGCTGACAATTTTCCCTTGGTCCCCAGTTTGTTTAGTAACAAGTATCT
 
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JMFF034F21+           GCCCAAGCATCTTTGCTGCAATATCTTCAGCTTGATCAGCCTTGGCAATATGAACTCCAC
JMSF040F04+           GCCCAAGCATCTTTGCTGCAATATCTTCAGCTTGATCAGCCTTGGCAATATGAACTCCAC
JMFS011H09+           GTCCAAGCATCTTCTCAGTTATTTCTTCTGCTCGAGTAGCATAGGCAATATGGACTCCAC
JMFS020E09+           GTCCAAGCATCTTCTCAGTTATTTCTTCTGCTCGAGTAGCATAGGCAATATGGACTCCAC
JMSF027F05+           GCCCAAGCATCTTTGCTGCAATATCTTCAGCTTGATCAGCCTTGGCAATATGAACTCCAC
JMFF035E17+           GCCCAAGCATCTTTGCTGCAATATCTTCAGCTTGATCAGCCTTGGCAATATGAACTCCAC
JMFF048K04+           GCCCAAGCATCTTTGCTGCAATATCTTCAGCTTGATCAGCCTTGGCAATAGGAACTCCAC
JMFN038A07+           GCCCAAGCATCTTTGCTGCAATATCTTCAGCTTGATCAGCCTTGGCAATATGAACTCCAC
                      ____________________________________________________________
consensus             GCCCAAGCATCTTTGCTGCAATATCTTCAGCTTGATCAGCCTTGGCAATATGAACTCCAC
 
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JMFF034F21+           CTTTAAATCCATTTTTGAATGTCCCCAGACCCCTTCCACCAGCTAGCACTTGAGACTTCA
JMSF040F04+           CTTTAAATCCATTTTTGAATGTCCCCAGACCCCTTCCACCAGCTAGCACTTGAGACTTCA
JMFS011H09+           CTAGAAATCCATTTTTGAATGTACCCAAGCCTCTTCCACCAGCTAGCACCTGGGACTTTA
JMFS020E09+           CTAGAAATCCATTTTTGAATGTACCCAAGCCTCTTCCACCAGCTAGCACCTGGGACTTTA
JMSF027F05+           CTTTAAATCCATTTTTGAATGTCCCCAGACCCCTTCCACCAGCCAGCACTTGAGACTTCA
JMFF035E17+           CTTTAAATCCATTTTTGAATGTCCCCAGACCCCTTCCACCAGCTAGCACTTGAGACTTCA
JMFF048K04+           CTTTAAATCCATTTTTGAATGTCCCCAGACCCCTTCCACCAGTTAGCACTGGAGGCTTCA
JMFN038A07+           CTTTAAATCCATTTTTGAATGTCCCCAGACCCCTTCCACCAGCTAGCACTTGAGACTTCA
                      ____________________________________________________________
consensus             CTTTAAATCCATTTTTGAATGTCCCCAGACCCCTTCCACCAGCTAGCACTTGAGACTTCA
 
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JMFF034F21+           CAACAATCTCATTTTCATTGGGGAATACATCCTGAATCGCCTTTTTCACTTCTCCAATGG
JMSF040F04+           CAACAATCTCATTTTCATTGGGGAATACATCCTGAATCGCCTTTTTCACTTCTCCAATGG
JMFS011H09+           CAACAATCTCATCTTCTTTGGGGAATACATCTTGCATCGCCTTTTTCACTTGTTCAATGG
JMFS020E09+           CAACAATCTCATCTTCTTTGGGGAATACATCTTGCATCGCCTTTTTCACTTGTTCAATGG
JMSF027F05+           CAACAATCTCATTTTCATTGGGGAATACATCCTGAATCGCCTTTTTCACTTCTCCAATGG
JMFF035E17+           CAACAATCTCATTTTCATTGGGGAATACATCCTGAATCGCCTTTTTCACTTCTCCAATGG
JMFF048K04+           CAACAATCTCATTTTCATGGGGGAATACATCCTGATTCGCCTTTTTCACTTCTCCCTTGG
JMFN038A07+           CAACAATCTCATTTTCATTGGGGAATACATCCTGAATCGCCTTTTTCACTTCTCCAATGG
                      ____________________________________________________________
consensus             CAACAATCTCATTTTCATTGGGGAATACATCCTGAATCGCCTTTTTCACTTCTCCAATGG
 
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JMFF034F21+           AACCAACGGCAACACCCTTTGGGACATTGATCCCATATTTTCCCATCAACTGAGCACCCT
JMSF040F04+           AACCAACGGCAACACCCTTTGGGACATTGATCCCATATTTTCCCATCAACTGAGCACCCT
JMFS011H09+           AACCAACAGCGACACCTTTCGGGACATTGATCCCATATTTGCCCATCAAATCAGCTCCCT
JMFS020E09+           AACCAACAGCGACACCTTTCGGGACATTGATCCCATATTTGCCCATCAAATCAGCTCCCT
JMSF027F05+           AACCAACGGCAACACCCTTTGGGACATTGATCCCATATTTTCCCATCAACTGAGCACCCT
JMFF035E17+           AACCAACGGCAACACCCTTTGGGACATTGATCCCATATTTTCCCATCAACTGAGCACCCT
JMFF048K04+           ACTCAACGGCAACACCCTTGGGTACATTTATCCCATATTTTCCCATCAACTGAGCACCCT
JMFN038A07+           AACCAACGGCAACACCCTTTGGGACATTGATCCCATATTTTCCCATCAACTGAGCACCCT
                      ____________________________________________________________
consensus             AACCAACGGCAACACCCTTTGGGACATTGATCCCATATTTTCCCATCAACTGAGCACCCT
 
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JMFF034F21+           GGTATTCATGGATATTGAGGCGGCGGAGCTGTTGTTGCTGCCACTTCCCGGCGACGGAAA
JMSF040F04+           GGTATTCATGGATATTGAGGCGGCGGAGCTGTTGTTGCTGCCACTTCCCGGCGACGGAAA
JMFS011H09+           GATATTCGTGGATGTTGAGGCGGCGGAGCTGCTGCTGTTGCCATTTTCCGGCGATGGAGA
JMFS020E09+           GATATTCGTGGATGTTGAGGCGGCGGAGCTGCTGCTGTTGCCATTTTCCGGCGATGGAGA
JMSF027F05+           GGTATTCATGGATATTGAGGCGGCGGAGCTGTTGTTGCTGCCACTTCCCGGCGACGGAAA
JMFF035E17+           GGTATTCATGGATATTGAGGCGGCGGAGCTGTTGTTGCTGCCACTTCCCGGCGACGGAAA
JMFF048K04+           GGTATTCATGGATATTGAGGCGGCGGAGCTGTTGTTGGTGCCACTTCCCGGCGACGGAAA
JMFN038A07+           GGTATTCATGGATATTGAGGCGGCGGAGCTGTTGTTGCTGCCACTTCCCGGCGACGGAAA
                      ____________________________________________________________
consensus             GGTATTCATGGATATTGAGGCGGCGGAGCTGTTGTTGCTGCCACTTCCCGGCGACGGAAA
 
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JMFF034F21+           GCGAGCGGCCGGCGAGTTTTCCAAGCAATCCTCTCACCATTCTTCAGATCCTAAA     
JMSF040F04+           GCGAGCGGCCGGCGAGTTTTCCAAGCAATCCTCTCACCATTCTTCAGATCCTAAA     
JMFS011H09+           GTGAGCGAGTGGCGATTTTTGCCAACAATCCTCTCACCATTATTCGGATTCTAAA     
JMFS020E09+           GTGAGCGAGTGGCGATTTTTGCCAACAATCCTCTCACCATTATTCGGATTCTAAA     
JMSF027F05+           GCGAGCGGCCGGCGAGTTTTCCAAGCAATCCTCTCACCATTCTTCAGATCCTAAACACGA
JMFF035E17+           GCGAGCGGCCGGCGAGTTTTCCAAGCAATCCTCTCACCATTCTTCAGATCCTAAACACGA
JMFF048K04+           GCGAGCGGCCGGCGAGTTTTCCAAGCAATCCTCTCACCATTCTTCAGATCCTAAACACGA
JMFN038A07+           GCGAGCGGCCGGCGAGTTTTCCAAGCAATCCTCTCACCATTCTTCAGATCCTAAACACGA
                      ____________________________________________________________
consensus             GCGAGCGGCCGGCGAGTTTTCCAAGCAATCCTCTCACCATTCTTCAGATCCTAAACACGA
 
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JMSF027F05+           TTGAATCGAAAGAGTATAGAGCTGTTTAAGCGATCGGAGAGCT                 
JMFF035E17+           TTGAATCGAAAGAGTATAGAGCTGTTTAAGCGATCGGAGAGCTATGAAAGTATGAAGC  
JMFF048K04+           TGGAATCGAAAGAGT                                             
JMFN038A07+           TTGAATCGAAAGAGTATAGAGCTGTTTAAGCGATCGGAGAGCTATGAAAGTATGAAGCAG
                      ____________________________________________________________
consensus             TTGAATCGAAAGAGTATAGAGCTGTTTAAGCGATCGGAGAGCTATGAAAGTATGAAGCAG