Contig 001850:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN006G21+                       CATTCCCAGCTTGGTGAGAATTACATAAGGCGAAACGCAGTTGGCTTT
JMFN017C20+                                                             AGTTGGCTTT
                      ____________________________________________________________
consensus                         CATTCCCAGCTTGGTGAGAATTACATAAGGCGAAACGCAGTTGGCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN006G21+           GATCCCATATTTCCCCATTTCAACGCACAGGCTCTTGCATAATCCCACGACTGCGCACTT
JMFN017C20+           GATCCCATATTTCCCCATTTCAACGCACAGGCTCTTGCATAATCCCACGACTGCGCACTT
                      ____________________________________________________________
consensus             GATCCCATATTTCCCCATTTCAACGCACAGGCTCTTGCATAATCCCACGACTGCGCACTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN006G21+           GGATGCAGTGTACGTGTCGGAGGTGATCCCGAACACCTCCGACGCGGCGCTTGCCGAGAA
JMFN017C20+           GGATGCAGTGTACGTGTCGGAGGTGATCCCGAACACCTCCGACGCGGCGCTTGCCGAGAA
                      ____________________________________________________________
consensus             GGATGCAGTGTACGTGTCGGAGGTGATCCCGAACACCTCCGACGCGGCGCTTGCCGAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN006G21+           TATTATGCTGCCCTTCTTCGCCGGAATCATCACCCTGGCCGCGTGTTTGGCGCAGAAGAA
JMFN017C20+           TATTATGCTGCCCTTCTTCGCCGGAATCATCACCCTGGCCGCGTGTTTGGCGCAGAAGAA
                      ____________________________________________________________
consensus             TATTATGCTGCCCTTCTTCGCCGGAATCATCACCCTGGCCGCGTGTTTGGCGCAGAAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN006G21+           TGCTCCGTACACATTCGTCTCGAAAACTAGGTTGATGTTTTCTGGGCTGGCCTCCAAGAT
JMFN017C20+           TGCTCCGTACACATTCGTCTCGAAAACTAGGTTGATGTTTTCTGGGCTGGCCTCCAAGAT
JMFN036H18+                                       AGGTTGATGTTTTCTGGGCTGGCCTCCAAGAT
                      ____________________________________________________________
consensus             TGCTCCGTACACATTCGTCTCGAAAACTAGGTTGATGTTTTCTGGGCTGGCCTCCAAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN006G21+           GCTGGTGTCGCGGCTCCCTGCGGTCCCGGCATTGCTGAACATGATATCCAACTTTCCGTA
JMFN017C20+           GCTGGTGTCGCGGCTCCCTGCGGTCCCGGCATTGCTGAACATGATATCCAACTTTCCGTA
JMFN036H18+           GCTGGTGTGGCGGCTCCCTGCGGTCCCGGCATTGCTGAACATGATATCCAACTTTCCGTA
                      ____________________________________________________________
consensus             GCTGGTGTCGCGGCTCCCTGCGGTCCCGGCATTGCTGAACATGATATCCAACTTTCCGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN006G21+           CCTGGAAACAGTGGTGTCCACCGCATGTTGGACGTGGGATTCGATTCTGACGTCGCAGTG
JMFN017C20+           CCTGGAAACAGTGGTGTCCACCGCATGTTGGACGTGGGATTCGATTCTGACGTCGCAGTG
JMFN036H18+           CCTGGAAACAGTGGTGTCCACCGCATGTTGGACGTGGGATTCGATTCTGACGTCGCAGTG
                      ____________________________________________________________
consensus             CCTGGAAACAGTGGTGTCCACCGCATGTTGGACGTGGGATTCGATTCTGACGTCGCAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN006G21+           GATGAATAGTGCATATTCCGAGCCAATCTCTTGAGCGACGGAGAGGCCATTCTTGTCGTC
JMFN017C20+           GATGAATAGTGCATATTCCGAGCCAATCTCTTGAGCGACGGAGAGGCCATTCTTGTCGTC
JMFN036H18+           GATGAATAGTGCATATTCCGAGCCAATCTCTTGAGCGACGGAGAGGCCATTCTTGTCGTC
                      ____________________________________________________________
consensus             GATGAATAGTGCATATTCCGAGCCAATCTCTTGAGCGACGGAGAGGCCATTCTTGTCGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN006G21+           AATGTCAGCAATGATAACCTTACAGCCATGGTGAGCAAAGAGCCTGGCGGTGGTTGCTCC
JMFN017C20+           AATGTCAGCAATGATAACCTTACAGCCATGGTGAGCAAAGAGCCTGGCGGTGGTTGCTCC
JMFN036H18+           AATGTCAGCAATGATAACCTTACAGCCATGGTGAGCAAAGAGCCTGGCGGTGGTTGCTCC
                      ____________________________________________________________
consensus             AATGTCAGCAATGATAACCTTACAGCCATGGTGAGCAAAGAGCCTGGCGGTGGTTGCTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN006G21+           AATGCCGTTGGCTGCGCCTGTTATGATAGCAACCTTTCCTTCTAGTCTTTTGATGACGGG
JMFN017C20+           AATGCCGTTGGCTGCGCCTGTTATGATAGCAACCTTTCCTTCTAGTCTTTTGATGACGGG
JMFN036H18+           AATGCCGTTGGCCGCGCCTGTTATGATAGCAACCTTTCCTTCTAGTCTTTTGATGACGGG
                      ____________________________________________________________
consensus             AATGCCGTTGGCTGCGCCTGTTATGATAGCAACCTTTCCTTCTAGTCTTTTGATGACGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN006G21+           AAGTTGAAGGGAAGAGGCGGCCATAGTTGCGGATGCTAGCTGGTGTCAGTGAAG      
JMFN017C20+           AAGTTGAAGGGAAGAGGCGGCCATAGTTGCGGATGCTAGCTGGTGTCAGTGAAG      
JMFN036H18+           AAGTTGAAGGGAAGAGGCGGCCATAGTTGCGGATGCTAGCTGGTGTCAGTGAAGGAGAAA
                      ____________________________________________________________
consensus             AAGTTGAAGGGAAGAGGCGGCCATAGTTGCGGATGCTAGCTGGTGTCAGTGAAGGAGAAA