Contig 001848:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF021C05Sequence513001848 (6)gb|ABW69691.1|3e-116chalcone isomerase [Ipomoea purpurea]770001848 (6)gb|ABW69691.1|3e-104chalcone isomerase [Ipomoea purpurea]
JMFN035F09Sequence521001848 (6)gb|ABW69691.1|1e-96chalcone isomerase [Ipomoea purpurea]
JMFS085A05Sequence537001848 (6)gb|ABW69691.1|1e-93chalcone isomerase [Ipomoea purpurea]
JMSF024L15Sequence618001848 (6)gb|ABW69691.1|5e-143chalcone isomerase [Ipomoea purpurea]746001848 (6)gb|ABW69691.1|1e-147chalcone isomerase [Ipomoea purpurea]

Alignment

This contig is upended


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rJMFF021C05-                                  ATATTTTTAAAACAAATTCAAAACAAGCCACATAGG
                      ____________________________________________________________
consensus                                     ATATTTTTAAAACAAATTCAAAACAAGCCACATAGG
 
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JMFS085A05+               AAATAAAAACAAAAGTAATCCGTATAAATTAAGAGTATGCATAATATTAGTCTTTA
rJMFF021C05-          TACAAAATAAAAACAAAAGTAATCCGTATAAATTAAGAGTATGCATAATATTAGTCTTTA
rJMSF024L15-              AAATAAAAACAAAAGTAATCCGTATAAATTAAGAGTATGCATAATATTAGTCTTTA
                      ____________________________________________________________
consensus             TACAAAATAAAAACAAAAGTAATCCGTATAAATTAAGAGTATGCATAATATTAGTCTTTA
 
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JMFS085A05+           TTAGATTGGCAGACGCCACTCCCAAATAAAACAGATATCATTTCTCCATTTCCTATTTAG
rJMFF021C05-          TTAGATTGGCAGACGCCACTCCCAAATAAAACAGATATCATTTCTCCATTTCCTATTTAG
rJMSF024L15-          TTAGATTGGCAGACGCCACTCCCAAATAAAACAGATATCATTTCTCCATTTCCTATTTAG
                      ____________________________________________________________
consensus             TTAGATTGGCAGACGCCACTCCCAAATAAAACAGATATCATTTCTCCATTTCCTATTTAG
 
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JMFS085A05+           AGACGACGACCGTTTGTGGAATGACATCATTCTCACCTCCAACTTTTCCGCTTATGGCGT
rJMFF021C05-          AGACGACGACCGTTTGTGGAATGACATCATTCTCACCTCCAACTTTTCCGCTTATGGCGT
rJMSF024L15-          AGACGACGACCGTTTGTGGAATGACATCATTCTCACCTCCAACTTTTCCGCTTATGGCGT
                      ____________________________________________________________
consensus             AGACGACGACCGTTTGTGGAATGACATCATTCTCACCTCCAACTTTTCCGCTTATGGCGT
 
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JMFS085A05+           CGCCGCCGTTCATGAACAGGTCCGACAATCTGACGGCGAGGCTCTGCTTTGCTTCGGGGG
rJMFF021C05-          CGCCGCCGTTCATGAACAGGTCCGACAATCTGACGGCGAGGCTCTGCTTTGCTTCGGGGG
rJMSF024L15-          CGCCGCCGTTCATGAACAGGTCCGACAATCTGACGGCGAGGCTCTGCTTTGCTTCGGGGG
JMSF024L15+                                                           TTGCTTCGGGGG
                      ____________________________________________________________
consensus             CGCCGCCGTTCATGAACAGGTCCGACAATCTGACGGCGAGGCTCTGCTTTGCTTCGGGGG
 
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JMFS085A05+           AAACACCCTTGCTGCCGATGATCGACTCCAGCACCGCCTCCGACAGCGGCTTGTTCTCTA
rJMFF021C05-          AAACACCCTTGCTGCCGATGATCGACTCCAGCACCGCCTCCGACAGCGGCTTGTTCTCTA
rJMSF024L15-          AAACACCCTTGCTGCCGATGATCGACTCCAGCACCGCCTCCGACAGCGGCTTGTTCTCTA
JMSF024L15+           AAACACCCTTGCTGCCGATGATCGACTCCAGCACCGCCTCCGACAGCGGCTTGTTCTCTA
                      ____________________________________________________________
consensus             AAACACCCTTGCTGCCGATGATCGACTCCAGCACCGCCTCCGACAGCGGCTTGTTCTCTA
 
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JMFS085A05+           TTATTGCGCTCGCAGTCTCCGGCGTTGAACCGTCTTTGGAGAAGCTAATCGTTAACGAGC
rJMFF021C05-          TTATTGCGCTCGCAGTCTCCGGCGTTGAACCGTCTTTGGAGAAGCTAATCGTTAACGAGC
rJMSF024L15-          TTATTGCGCTCGCAGTCTCCGGCGTTGAACCGTCTTTGGAGAAGCTAATCGTTAACGAGC
JMSF024L15+           TTATTGCGCTCGCAGTCTCCGGCGTTGAACCGTCTTTGGAGAAGCTAATCGTTAACGAGC
JMFF021C05+                                               TGGAGAAGCTAATCGTTAACGAGC
                      ____________________________________________________________
consensus             TTATTGCGCTCGCAGTCTCCGGCGTTGAACCGTCTTTGGAGAAGCTAATCGTTAACGAGC
 
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JMFS085A05+           CAAGGGGTGATTGATTGAAGAAAATAGAGGCGCCCGGTGGGAAC-ATTTGGTCACTGAAA
rJMFF021C05-          CAAGGGGTGATTGATTGAAGAAAATAGAGGCGCCCGGTGGGAAC-ATTTGGTCACTGAAA
rJMSF024L15-          CAAGGGGTGATTGATTGAAGAAAATAGAGGCGCCCGGTGGGAAC-ATTTGGTCACTGAAA
JMSF024L15+           CAAGGGGTGATTGATTGAAGAAAATAGAGGCGCCCGGTGGGAAC-ATTTGGTCACTGAAA
JMFF021C05+           CAAGGGGTGATTGATTGAAGAAAATAGAGGCGCCCGGTGGGAAC-ATTTGGTCACTGAAA
JMFN035F09+                            AAGAAAATAGAGGCGCCCGGTGGGAACAATTGGGTCACTGAAA
                      ____________________________________________________________
consensus             CAAGGGGTGATTGATTGAAGAAAATAGAGGCGCCCGGTGGGAAC-ATTTGGTCACTGAAA
 
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JMFS085A05+           ACATCATTAAACTTGTCGATAGCTTTTCTCTCTGCATCGCCATACATTCCGGCGGCTTTC
rJMFF021C05-          ACATCATTAAACTTGTCGATAGCTTTTCTCTCTGCATCGCCATACATTCCGGCGGCTTTC
rJMSF024L15-          ACATCATTAAACTTGTCGATAGCTTTTCTCTCTGCATCGCCATACATTCCGGCGGCTTTC
JMSF024L15+           ACATCATTAAACTTGTCGATAGCTTTTCTCTCTGCATCGCCATACATTCCGGCGGCTTTC
JMFF021C05+           ACATCATTAAACTTGTCGATAGCTTTTCTCTNTGCATCGCCATACATTCCGGCGGCTTTC
JMFN035F09+           ACATCATTAAACTGGTCGATAGCTGTTCTCTCTGCATCGCCATACATTCCGGCGGCTTTC
                      ____________________________________________________________
consensus             ACATCATTAAACTTGTCGATAGCTTTTCTCTCTGCATCGCCATACATTCCGGCGGCTTTC
 
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JMFS085A05+           CAG-AAAGCAACGCAGTTTTCCGTCACCTTCTCCGAATACTGCTTGCCGCTTAACGGCAA
rJMFF021C05-          CAGAAAAGCAACGCAGTTTTCCGTCACCTTCTCCGAATACTGCTTGCCGCTTAACGGCAA
rJMSF024L15-          CAG-AAAGCAACGCAGTTTTCCGTCACCTTCTCCGAATACTGCTTGCCGCTTAACGGCAA
JMSF024L15+           CAG-AAAGCAACGCAGTTTTCCGTCACCTTCTCCGAATACTGCTTGCCGCTTAACGGCAA
JMFF021C05+           CAG-AAAGCAACGCAGTTTTCCGTCACCTTCTCCGAATACTGCTTGCCGCTTAACGGCAA
JMFN035F09+           CAG-AAAGCAACGCAGTGTTCCGTCACCTTCTCCGAATACTGCTTGCCGCTTAACGGCAA
                      ____________________________________________________________
consensus             CAG-AAAGCAACGCAGTTTTCCGTCACCTTCTCCGAATACTGCTTGCCGCTTAACGGCAA
 
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rJMFF021C05-          GATCATCGTTATCCGTGTCAGCTTCTCAAAGGGACCCGTAACGATGTCCCTGAAAAATTG
rJMSF024L15-          GATCATCGTTATCCGTGTCAGCTTCTCAAAGGGACCCGTAACGATGTCCCTGAAAAATTG
JMSF024L15+           GATCATCGTTATCCGTGTCAGCTTCTCAAAGGGACCCGTAACGATGTCCCTGAAAAATTG
JMFF021C05+           GATCATCGTTATCCGTGTCAGCTTCTCAAAGGGACCCGTAACGATGTCCCTGAAAAATTG
JMFN035F09+           GATCATCGTTATCCGTGTCAGCTTCTCAAAGGGACCCGTAACGATGTCCCTGAAAAATTG
                      ____________________________________________________________
consensus             GATCATCGTTATCCGTGTCAGCTTCTCAAAGGGACCCGTAACGATGTCCCTGAAAAATTG
 
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rJMFF021C05-          GACGGAATCCGTCAACTCCTCCGCACTTTTCCCGTTCCACTTAACGGCGAGAGANGGAAC
rJMSF024L15-          GACGGAATCCGTCAACTCCTCCGCACTTTTCCCGTTCCACTTAACGGCGAGAGAGGGAAC
JMSF024L15+           GACGGAATCCGTCAACTCCTCCGCACTTTTCCCGTTCCACTTAACGGCGAGAGAGGGAAC
JMFF021C05+           GACGGAATCCGTCAACTCCTCCGCACTTTTCCCGTTCCACTTAACGGCGAGAGAGGGAAC
JMFN035F09+           GACGGAATCCGTCAGCTCCTCCGCACTTTTCCCGTTCCACTTAACGGCGAGAGAGGGAAC
                      ____________________________________________________________
consensus             GACGGAATCCGTCAACTCCTCCGCACTTTTCCCGTTCCACTTAACGGCGAGAGAGGGAAC
 
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rJMFF021C05-          GGCGTCNGCTTCCAAGTAGACGCCTATCGCCGTGAACTTGACGAACTTTCCCGTCGATGT
rJMSF024L15-          GGCGTCGGCTTCCAAGTAGACGCCTATCGCCGTGAACTTGACGAAC-TTCCCGTCGATGT
JMSF024L15+           GGCGTCGGCTTCCAAGTAGACGCCTATCGCCGTGAACTTGACGAAC-TTCCCGTCGATGT
JMFF021C05+           GGCGTCGGCTTCCAAGTAGACGCCTATCGCCGTGAACTTGACGAAC-TTCCCGTCGATGT
JMFN035F09+           GGCGTCGGCTTCCAAGTAGACGCCTATCGCCGTGAACTTGACGAAC-TTCTCGTCGATGT
                      ____________________________________________________________
consensus             GGCGTCGGCTTCCAAGTAGACGCCTATCGCCGTGAACTTGACGAAC-TTCCCGTCGATGT
 
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rJMFF021C05-          TCAATCCTCTCGCCC                                             
rJMSF024L15-          TCAATCCTCTCGCCCCTGCGCCACCCAGGATCA                           
JMSF024L15+           TCAATCCTCTCGCCCCTGCGCCACCCAGGATCAGGGTCTTGGCCGTGCCCGGCGGCTTGA
JMFF021C05+           TCAATCCTCTCGCCCCTGCGCCACCCAGGATCAGGGTCTTGGCCGTGCCCGGCGGCTTGA
JMFN035F09+           TCAATCCTCTCGCCCCTGCGCCACCCAGGATCAGGGTCTTGGCCGTGCCCGGCGGCTTGA
                      ____________________________________________________________
consensus             TCAATCCTCTCGCCCCTGCGCCACCCAGGATCAGGGTCTTGGCCGTGCCCGGCGGCTTGA
 
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JMSF024L15+           CCGTCGCCGGAAACACGTAGCTCTCCACTTTGACTTCGGCGACACACGGCGGCGCAGACA
JMFF021C05+           CCGTCGCCGGAAACACGTAGCTCTCCACTTTGACTTCGGCGACACACGGCGGCGCAGACA
JMFN035F09+           CCGTCGCCGGAAACACGTAGCTCTCCACTTTGACTTCGGCGACACACGGCGGCGCAGACA
                      ____________________________________________________________
consensus             CCGTCGCCGGAAACACGTAGCTCTCCACTTTGACTTCGGCGACACACGGCGGCGCAGACA
 
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JMSF024L15+           TTGTTCA                                                     
JMFF021C05+           TTGTTCA                                                     
JMFN035F09+           TTGTTCACGGCTTCGCAGTACACTTTTTTTCCGCAACTATATATGAAAACAGGGGTTGGA
                      ____________________________________________________________
consensus             TTGTTCACGGCTTCGCAGTACACTTTTTTTCCGCAACTATATATGAAAACAGGGGTTGGA