Contig 001847:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010O13Sequence615001847 (3)ref|XP_006429592.1|3e-13hypothetical protein CICLE_v10013263mg [Citrus clementina] gb|ESR42832.1| hypoth463001847 (3)ref|XP_006429592.1|9e-14hypothetical protein CICLE_v10013263mg [Citrus clementina] gb|ESR42832.1| hypoth
JMFN034I05Sequence617001847 (3)ref|XP_006429592.1|3e-13hypothetical protein CICLE_v10013263mg [Citrus clementina] gb|ESR42832.1| hypoth

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010O13-                                          ATGATTGTCTTGGTTGACATGAATCACA
JMFF010O13+                    TTTTTTATGGACTACAAGTTTCAATGATTGTCTTGGTTGACATGAATCACA
JMFN034I05+                                                     TGGTTGACATGAATCACA
                      ____________________________________________________________
consensus                      TTTTTTATGGACTACAAGTTTCAATGATTGTCTTGGTTGACATGAATCACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010O13-          AGTTTAGAAACTAAAAAAATGGAAGATGAAGCTAAAGCCTAAACGCTAAATTTGCCCACA
JMFF010O13+           AGTTTAGAAACTAAAAAAATGGAAGATGAAGCTAAAGCCTAAACGCTAAATTTGCCCACA
JMFN034I05+           AGTTTAGAAACTAAAAAAATGGAAGATGAAGCTAAAGCCTAAACGCTAAATTTGCCCACA
                      ____________________________________________________________
consensus             AGTTTAGAAACTAAAAAAATGGAAGATGAAGCTAAAGCCTAAACGCTAAATTTGCCCACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010O13-          AAGACGAAATTTTCTCCATCCAGAATCATTACACTTTCGTGTAACAGAACTATGGAAGGA
JMFF010O13+           AAGACGAAATTTTCTCCATCCAGAATCATTACACTTTCGTGTAACAGAACTATGGAAGGA
JMFN034I05+           AAGACGAAATTTTCTCCATCCAGAATCATTACACTTTCGTGTAACAGAACTATGGAAGGA
                      ____________________________________________________________
consensus             AAGACGAAATTTTCTCCATCCAGAATCATTACACTTTCGTGTAACAGAACTATGGAAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010O13-          TAAATTACTTTAACTTGACGGGTTTTAAGGTGGTTGAAGTTAAAAGCTAATAGAAATGCC
JMFF010O13+           TAAATTACTTTAACTTGACGGGTTTTAAGGTGGTTGAAGTTAAAAGCTAATAGAAATGCC
JMFN034I05+           TAAATTACTTTAACTTGACGGGTTTTAAGGTGGTTGAAGTTAAAAGCTAATAGAAATGCC
                      ____________________________________________________________
consensus             TAAATTACTTTAACTTGACGGGTTTTAAGGTGGTTGAAGTTAAAAGCTAATAGAAATGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010O13-          TGTGGTGGTGGTGGTGCCTATGTTCATCCCACCCAAAGCATTGCAGCACAGGATAACAGG
JMFF010O13+           TGTGGTGGTGGTGGTGCCTATGTTCATCCCACCCAAAGCATTGCAGCACAGGATAACAGG
JMFN034I05+           TGTGGTGGTGGTGGTGCCTATGTTCATCCCACCCAAAGCATTGCAGCACAGGATAACAGG
                      ____________________________________________________________
consensus             TGTGGTGGTGGTGGTGCCTATGTTCATCCCACCCAAAGCATTGCAGCACAGGATAACAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010O13-          CAACAAACAGACATCTCCTGAACACGGAGAACACTGAGGAGACTAGGAAACATGGGCAGC
JMFF010O13+           CAACAAACAGACATCTCCTGAACACGGAGAACACTGAGGAGACTAGGAAACATGGGCAGC
JMFN034I05+           CAACAAACAGACATCTCCTGAACACGGAGAACACTGAGGAGACTAGGAAACATGGGCAGC
                      ____________________________________________________________
consensus             CAACAAACAGACATCTCCTGAACACGGAGAACACTGAGGAGACTAGGAAACATGGGCAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010O13-          AACAACATGCGAGGATTGGATCATCGTATGGACGGCCGCCTTCGTGGTGGTGGTGGGGGT
JMFF010O13+           AACAACATGCGAGGATTGGATCATCGTATGGACGGCCGCCTTCGTGGTGGTGGTGGGGGT
JMFN034I05+           AACAACATGCGAGGATTGGATCATCGTATGGACGGCCGCCTTCGTGGTGGTGGTGGGGGT
                      ____________________________________________________________
consensus             AACAACATGCGAGGATTGGATCATCGTATGGACGGCCGCCTTCGTGGTGGTGGTGGGGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010O13-          GGGTGGTGAGGGTGGTGGTGGTGACCCATACTCTTCCTCGACCTGNTAATCNNAAAACNA
JMFF010O13+           -GGTGGTGAGGGTGGTGGTGGTGACCCATACTCTTCCTCGACCTGATAATCAGAAAACAA
JMFN034I05+           -GGTGGTGAGGGTGGTGGTGGTGACCCATACTCTTCCTCGACCTGATAATCAGAAAACAA
                      ____________________________________________________________
consensus             -GGTGGTGAGGGTGGTGGTGGTGACCCATACTCTTCCTCGACCTGATAATCAGAAAACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF010O13-          TGAATAC                                                     
JMFF010O13+           TGAATACCCAGACCCCAGTTTCACAACCCAAGACTACCCACCATGAAATCTTGAAAAAAA
JMFN034I05+           TGAATACCCAGACCCCAGTTTCACAACCCAAGACTACCCACCATGAAATCTTGAAAAAAA
                      ____________________________________________________________
consensus             TGAATACCCAGACCCCAGTTTCACAACCCAAGACTACCCACCATGAAATCTTGAAAAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF010O13+           ATTGGAAGAAAAATGATCAAAATTGACTAGATTACCTGAAAAAAAATGGAAGCTTTTTGG
JMFN034I05+           ATTGGAAGAAAAATGATCAAAATTGACTAGATTACCTGAAAAAAAATGGAAGCTTTTTGG
                      ____________________________________________________________
consensus             ATTGGAAGAAAAATGATCAAAATTGACTAGATTACCTGAAAAAAAATGGAAGCTTTTTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF010O13+           TTACTCTTCTTGGTTGCAGCTTTT                                    
JMFN034I05+           TTACTCTTCTTGGTTGCAGCTTTTGGAGATGCCGGAGCAGAAGAAAATTAGTTAAACGGA
                      ____________________________________________________________
consensus             TTACTCTTCTTGGTTGCAGCTTTTGGAGATGCCGGAGCAGAAGAAAATTAGTTAAACGGA