Contig 001840:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN044D15+                                                                    CGG
JMFN031J11+                                                      AAAAAATTAAATTACGG
                      ____________________________________________________________
consensus                                                        AAAAAATTAAATTACGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN044D15+           AATTGATTGAGTCTGGATGAAACTGGAGAGGCCTTTGGCTTGAAAAAAAAGAAGGATCAA
JMFN031J11+           AATTGATTGAGTTTGGATGAAACTGGAGAGGACTTTGGCTTGAAAAAAAAGAAGGATAAA
                      ____________________________________________________________
consensus             AATTGATTGAGTTTGGATGAAACTGGAGAGGCCTTTGGCTTGAAAAAAAAGAAGGATCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN044D15+           GGATAAAGAAAGCAGATGTTTATTTGCCACTATTATCTAAGGGTAAAGGATTCATAGTCC
JMFN031J11+           GGATAAAGAAAGCAGATGTTTATTTGCCACTCTTATTTAAGGGTAAAGGATTCATAGTCC
                      ____________________________________________________________
consensus             GGATAAAGAAAGCAGATGTTTATTTGCCACTCTTATTTAAGGGTAAAGGATTCATAGTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN044D15+           AACATGGAGTTGATGAAGTCCATGTTTTACATTTATTATTGGGGCAGGGTTACAGCGTAA
JMFN031J11+           AACATGGAGTTGATGAAGTCCATGTTTTACATTTATTATTGGGGCAGGGTTACAGCGTAA
                      ____________________________________________________________
consensus             AACATGGAGTTGATGAAGTCCATGTTTTACATTTATTATTGGGGCAGGGTTACAGCGTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN044D15+           CATCCACTTTATAATGATGTCCCAACTAGATTACCCGGTCTCCGGATGTTGTTATGACAA
JMFN031J11+           CATCCACTTTATAATGATGTCCCAACTAGATTAGCCGGTCACCGGA-GTTCTTATGACAA
                      ____________________________________________________________
consensus             CATCCACTTTATAATGATGTCCCAACTAGATTAGCCGGTCTCCGGATGTTGTTATGACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN044D15+           CGTTGCTACAGTTGACGATAAGACGAACTCGCCAAGGCTTATAATCCGGGGTTACGGGGC
JMFN031J11+           CGTTGCTACAGTCGACGATAAGACGAACTCGCCAAGGCTTATAATCCGGGGTTACGGGGC
                      ____________________________________________________________
consensus             CGTTGCTACAGTTGACGATAAGACGAACTCGCCAAGGCTTATAATCCGGGGTTACGGGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN044D15+           AGTTTCGGAAAACCACCACAACATCCAAGTCGACTGTTTTCTTTCTCAATGGTAGATTAG
JMFN031J11+           AGTTTTGGAAAACCACCACAACATCCAAGTCG-CTGTTTTCTTTCTCAATCGTAGATTTG
                      ____________________________________________________________
consensus             AGTTTTGGAAAACCACCACAACATCCAAGTCGACTGTTTTCTTTCTCAATGGTAGATTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN044D15+           GATAAAAATGCGTCCACTCCCACCAGTTCCGGCCAGCTATTCTTACCGTCGGCGATGCGC
JMFN031J11+           GCTAAAAATGCGTCCACTCCCACCAGTTCCGGCCAGCTATTCTTACCGTCGGTGATGCGC
                      ____________________________________________________________
consensus             GCTAAAAATGCGTCCACTCCCACCAGTTCCGGCCAGCTATTCTTACCGTCGGTGATGCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN044D15+           GGCATCTT                                                    
JMFN031J11+           GGCATCTTAGCTTCTTGATGTTTGGGGGCTGGATGGGTTACGTTGTTCTTTGCCTCTCTT
                      ____________________________________________________________
consensus             GGCATCTTAGCTTCTTGATGTTTGGGGGCTGGATGGGTTACGTTGTTCTTTGCCTCTCTT