Contig 001834:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN020B15Sequence626001834 (7)ref|XP_006430419.1|1e-73hypothetical protein CICLE_v10013010mg [Citrus clementina] gb|ESR43659.1| hypoth
JMFN020L13Sequence617001834 (7)ref|XP_006430419.1|9e-72hypothetical protein CICLE_v10013010mg [Citrus clementina] gb|ESR43659.1| hypoth
JMFS021G02Sequence614001834 (7)ref|XP_006430419.1|9e-74hypothetical protein CICLE_v10013010mg [Citrus clementina] gb|ESR43659.1| hypoth
JMSF016M14Sequence232001834 (7)ref|XP_011069986.1|9e-32PREDICTED: 14 kDa zinc-binding protein-like [Sesamum indicum]624001834 (7)ref|XP_006430419.1|2e-74hypothetical protein CICLE_v10013010mg [Citrus clementina] gb|ESR43659.1| hypoth
JMSF036C02Sequence621001834 (7)ref|XP_006430419.1|1e-69hypothetical protein CICLE_v10013010mg [Citrus clementina] gb|ESR43659.1| hypoth572001834 (7)ref|XP_006430419.1|6e-70hypothetical protein CICLE_v10013010mg [Citrus clementina] gb|ESR43659.1| hypoth

Alignment

This contig is upended


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JMFN020L13+                TTTAAAAGTTAAAACTGATAACATTCACAAATTTCCAGTCTGTCATGATTCAGAT
JMSF036C02+                                           CAAATTTCCAGTCTGTCATGATTCAGAT
JMFS021G02+                                            AAATTTCCAGTCTGTCATGATTCAGAT
rJMSF016M14-                                           AAATTTCCAGTCTGTCATGATTCAGAT
JMFN020B15+                                            AAATTTCCAGTCTGTCATGATTCAGAT
                      ____________________________________________________________
consensus                  TTTAAAAGTTAAAACTGATAACATTCACAAATTTCCAGTCTGTCATGATTCAGAT
 
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JMFN020L13+           AGTTTAATTGCAAGTATCATTCCAGATAAAATGTTCATGCATGATAGATAGCCAATTGAC
rJMSF036C02-                                  GATAAAATGTTCATGCATGATAGATAGCCAATTGAC
JMSF036C02+           AGTTTAATTGCAAGTATCATTCCAGATAAAATGTTCATGCATGATAGATAGCCAATTGAC
JMFS021G02+           AGTTTAATTGCAAGTATCATTCCAGATAAAATGTTCATGCATGATAGATAGCCAATTGAC
rJMSF016M14-          AGTTTAATTGCAAGTATCATTCCAGATAAAATGTTCATGCATGATAGATAGCCAATTGAC
JMFN020B15+           AGTTTAATGNCAAGTATCATTCCAGATAAAATGTTCATGCATGATAGATAGCCAATTGAC
                      ____________________________________________________________
consensus             AGTTTAATTGCAAGTATCATTCCAGATAAAATGTTCATGCATGATAGATAGCCAATTGAC
 
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JMFN020L13+           TACCAGCAAGGTTATTTATTTGTAGGGCATAAAGTGCATAAAACTACCCTTATTCTCTGG
rJMSF036C02-          TACCAGCAAGGTTATTTATTTGTAGGGCATAAAGTGCATAAAACTACCCTTATTCTCTGG
JMSF036C02+           TACCAGCAAGGTTATTTATTTGTAGGGCATAAAGTGCATAAAACTACCCTTATTCTCTGG
JMFS021G02+           TACCAGCAAGGTTATTTATTTGTAGGGCATAAAGTGCATAAAACTACCCTTATTCTCTGG
rJMSF016M14-          TACCAGCAAGGTTATTTATTTGTAGGGCATAAAGTGCATAAAACTACCCTTATTCTCTGG
JMFN020B15+           TACCAGCAAGGTTATTTATTTGTAGGGCATAAAGTGCATAAAACTACCCTTATTCTCTGG
                      ____________________________________________________________
consensus             TACCAGCAAGGTTATTTATTTGTAGGGCATAAAGTGCATAAAACTACCCTTATTCTCTGG
 
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JMFN020L13+           ATGATTCTGCTGGGACATCTATCTTCAGGGTCTCTACAATTGCTCAAGTCCAATTAGCCA
rJMSF036C02-          ATGATTCTGCTGGGACATCTATCTTCAGGGTCTCTACAATTGCTCAAGTCCAATTAGCCA
JMSF036C02+           ATGATTCTGCTGGGACATCTATCTTCAGGGTCTCTACAATTGCTCAAGTCCAATTAGCCA
JMFS021G02+           ATGATTCTGCTGGGACATCTATCTTCAGGGTCTCTACAATTGCTCAAGTCCAATTAGCCA
rJMSF016M14-          ATGATTCTGCTGGGACATCTATCTTCAGGGTCTCTACAATTGCTCAAGTCCAATTAGCCA
JMFN020B15+           ATGATTCTGCTGGGACATCTATCTTCAGGGTCTCTACAATTGCTCAAGTCCAATTAGCCA
                      ____________________________________________________________
consensus             ATGATTCTGCTGGGACATCTATCTTCAGGGTCTCTACAATTGCTCAAGTCCAATTAGCCA
 
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JMFN020L13+           GGTGGCCAATTCAATTGACGTCCTCCAATGAGATGAAGGTGAATATGAAAAACAGTTTGG
rJMSF036C02-          GGTGGCCAATTCAATTGACGTCCTCCAATGAGATGAAGGTGAATATGAAAAACAGTTTGG
JMSF036C02+           GGTGGCCAATTCAATTGACGTCCTCCAATGAGATGAAGGTGAATATGAAAAACAGTTTGG
JMFS021G02+           GGTGGCCAATTCAATTGACGTCCTCCAATGAGATGAAGGTGAATATGAAAAACAGTTTGG
rJMSF016M14-          GGTGGCCAATTCAATTGACGTCCTCCAATGAGATGAAGGTGAATATGAAAAACAGTTTGG
JMFN020B15+           GGTGGCCAATTCAATTGACGTCCTCCAATGAGATGAAGGTGAATATGAAAAACAGTTTGG
                      ____________________________________________________________
consensus             GGTGGCCAATTCAATTGACGTCCTCCAATGAGATGAAGGTGAATATGAAAAACAGTTTGG
 
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JMFN020L13+           CCTCCATCTTTTCCATCGTTGATCACAAGCCTGAACCCATTTTCATCGAGACCTTCTTGT
rJMSF036C02-          CCTCCATCTTTTCCATCGTTGATCACAAGCCTGAACCCATTTTCATCGAGACCTTCTTGT
JMSF036C02+           CCTCCATCTTTTCCATCGTTGATCACAAGCCTGAACCCATTTTCATCGAGACCTTCTTGT
JMFS021G02+           CCTCCATCTTTTCCATCGTTGATCACAAGCCTGAACCCATTTTCATCGAGACCTTCTTGT
rJMSF016M14-          CCTCCATCTTTTCCATCGTTGATCACAAGCCTGAACCCATTTTCATCGAGACCTTCTTGT
JMFN020B15+           CCTCCATCTTTTCCATCGTTGATCACAAGCCTGAACCCATTTTCATCGAGACCTTCTTGT
                      ____________________________________________________________
consensus             CCTCCATCTTTTCCATCGTTGATCACAAGCCTGAACCCATTTTCATCGAGACCTTCTTGT
 
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JMFN020L13+           TTGGCTACAAGCTTTGCAGTGTAAAGAAGGCGACCAAGAATCTCGCAATGTCTCTCCTCA
rJMSF036C02-          TTGGCTACAAGCTTTGCAGTGTAAAGAAGGCGACCAAGAATCTCGCAATGTCTCTCCTCA
JMSF036C02+           TTGGCTACAAGCTTTGCAGTGTAAAGAAGGCGACCAAGAATCTCGCAATGTCTCTCCTCA
JMFS021G02+           TTGGCTACAAGCTTTGCAGTGTAAAGAAGGCGACCAAGAATCTCGCAATGTCTCTCCTCA
rJMSF016M14-          TTGGCTACAAGCTTTGCAGTGTAAAGAAGGCGACCAAGAATCTCGCAATGTCTCTCCTCA
JMFN020B15+           TTGGCTACAAGCTTTGCAGTGTAAAGAAGGCGACCAAGAATCTCGCAATGTCTCTCCTCA
                      ____________________________________________________________
consensus             TTGGCTACAAGCTTTGCAGTGTAAAGAAGGCGACCAAGAATCTCGCAATGTCTCTCCTCA
 
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JMFN020L13+           GCCTTGGAGAGCCCAGTTAAACCATCCTTCACCTTTGGAATAAGAAGAATGTGTGTAGGA
rJMSF036C02-          GCCTTGGAGAGCCCAGTTAAACCATCCTTCACCTTTGGAATAAGAAGAATGTGTGTAGGA
JMSF036C02+           GCCTTGGAGAGCCCAGTTAAACCATCCTTCACCTTTGGAATAAGAAGAATGTGTGTAGGA
JMFS021G02+           GCCTTGGAGAGCCCAGTTAAACCATCCTTCACCTTTGGAATAAGAAGAATGTGTGTAGGA
JMSF016M14+                GGAGAGCCCAGTTAAACCATCCTTCACCTTTGGAATAAGAAGAATGTGTGTAGGA
rJMSF016M14-          GCCTTGGAGAGCCCAGTTAAACCATCCTTCACCTTTGGAATAAGAAGAATGTGTGTAGGA
JMFN020B15+           GCCTTGGAGAGCCCAGTTAAACCATCCTTCACCTTTGGAATAAGAAGAATGTGTGTAGGA
                      ____________________________________________________________
consensus             GCCTTGGAGAGCCCAGTTAAACCATCCTTCACCTTTGGAATAAGAAGAATGTGTGTAGGA
 
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JMFN020L13+           GCTTTGGGATCTATATCCCTGAAAGCCAAAACCTGATCATCCTCGTAAACAATGTTGGCC
rJMSF036C02-          GCTTTGGGATCTATATCCCTGAAAGCCAAAACCTGATCATCCTCGTAAACAATGTTGGCC
JMSF036C02+           GCTTTGGGATCTATATCCCTGAAAGCCAAAACCTGATCATCCTCGTAAACAATGTTGGCC
JMFS021G02+           GCTTTGGGATCTATATCCCTGAAAGCCAAAACCTGATCATCCTCGTAAACAATGTTGGCC
JMSF016M14+           GCTTTGGGATCTATATCCCTGAAAGCCAAAACCTGACCATCCTCGTAAACAATGTTGGCC
rJMSF016M14-          GCTTTGGGATCTATATCCCTGAAAGCCAAAACCTGACCATCCTCGTAAACAATGTTGGCC
JMFN020B15+           GCTTTGGGATCTATATCCCTGAAAGCCAAAACCTGATCATCCTCGTAAACAATGTTGGCC
                      ____________________________________________________________
consensus             GCTTTGGGATCTATATCCCTGAAAGCCAAAACCTGATCATCCTCGTAAACAATGTTGGCC
 
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JMFN020L13+           GGAATTTCCTTGTTTATAATCTTGTCAAATATGGTGGGAGAATCGGAGGG-AACGGCGTT
rJMSF036C02-          GGAATTTCCTTGTTTATAATCTTGTCAAATATGGTGGGAGAATCGGAGGGAAACGGCGTT
JMSF036C02+           GGAATTTCCTTGTTTATAATCTTGTCAAATATGGTGGGAGAATCGGAGGGAAACGGCGTT
JMFS021G02+           GGAATTTCCTTGTTTATAATCTTGTCAAATATGGTGGGAGAATCGGAGGG-AACGGCGTT
JMSF016M14+           GGAATTTCCTTGTTTATAATCTTGTCAAATATGGTGGGAGAATCGGAGGG-AACGGCGTT
rJMSF016M14-          GGAATTTCCTTGTTTATAATCTTGTCAAATATGGTGGGAGAATCGGAGGG-AACGGCGTT
JMFN020B15+           GGAATTTCCTTGTTTATAATCTTGTCAAATATGGTGGGAGAATCGGAGGG-AACGGCGTT
                      ____________________________________________________________
consensus             GGAATTTCCTTGTTTATAATCTTGTCAAATATGGTGGGAGAATCGGAGGG-AACGGCGTT
 
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JMFN020L13+           TCCAGAAGCCATGGGAGTGT                                        
rJMSF036C02-          TCCAGAAGCCATGGGAGTGTGAGGAGAGAGATGACTGGTC                    
JMSF036C02+           TCCAGAAGCCATGGGAGTGTGAGGAGAGAGATGACTGGTC                    
JMFS021G02+           TCCAGAAGCCATGGGAGTGTGAGGAGAGAGATGACTGGTCAGTCGTT             
JMSF016M14+           TCCAGAAGCCATGGGAGTGTGAGGAGAGAGATGACTGGTCAGTCGTT             
rJMSF016M14-          TCCAGAAGCCATGGGAGTGTGAGGAGAGAGATGACTGGTCAGTCGTT             
JMFN020B15+           TCCAGAAGCCATGGGAGTGTGAGGAGAGAGATGACTGGTCAGTCGTTAAGTCGGCTGCTG
                      ____________________________________________________________
consensus             TCCAGAAGCCATGGGAGTGTGAGGAGAGAGATGACTGGTCAGTCGTTAAGTCGGCTGCTG