Contig 001829:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN017N09Sequence626001829 (5)gb|KHG07320.1|1e-35Uncharacterized protein F383_34127 [Gossypium arboreum]
JMSF039D10Sequence685001829 (5)gb|KHG07320.1|4e-34Uncharacterized protein F383_34127 [Gossypium arboreum]721001829 (5)gb|KHG07320.1|5e-34Uncharacterized protein F383_34127 [Gossypium arboreum]
JMSF040D10Sequence665001829 (5)gb|KHG07320.1|3e-34Uncharacterized protein F383_34127 [Gossypium arboreum]725001829 (5)gb|KHG07320.1|6e-34Uncharacterized protein F383_34127 [Gossypium arboreum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040D10-                        ATATATTTNATTATTTGTTTATTACAACACTACTGAGGAGATTACA
rJMSF039D10-                                        GTTTATTACAACACTACTGAGGAGATTACA
JMSF039D10+                                                                GATTACA
                      ____________________________________________________________
consensus                           ATATATTTNATTATTTGTTTATTACAACACTACTGAGGAGATTACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040D10-          GAGAATTCTTGCCACCAAATTCATCAGCTTCTGCTAAAAACACATGCAGAGAATTATATT
rJMSF039D10-          GAGAATTCTTGCCACCAAATTCATCAGCTTCTGCTAAAAACACATGCAGAGAATTATATT
JMSF040D10+                        ACCAAATTCATCAGCTTCTGCTAAAAACACATGCAGAGAATTATATT
JMSF039D10+           GAGANTTCTTGCCACCAAATTCATCAGCTTCTGCTAAAAACACATGCAGAGAATTATATT
                      ____________________________________________________________
consensus             GAGAATTCTTGCCACCAAATTCATCAGCTTCTGCTAAAAACACATGCAGAGAATTATATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040D10-          ATTGCCACCAGTTCCATTGCCCAAATGAAACAATTAAGGAATCCTTAATGGCCAAGATAG
rJMSF039D10-          ATTGCCACCA-TTCCATTGCCCAAATGAAACAATTAAGGAATCCTTAATGGCCAAGATAG
JMSF040D10+           ATTGCCACCA-TTCCATTGCCCAAATGAAACAATTAAGGAATCCTTAATGGCCAAGATAG
JMSF039D10+           ATTGCCACCA-TTCCATTGCCCAAATGAAACAATTAAGGAATCCTTAATGGCCAAGATAG
JMFN017N09+                                             TAAGGAATCCTTAATGGCCAAGATAG
                      ____________________________________________________________
consensus             ATTGCCACCA-TTCCATTGCCCAAATGAAACAATTAAGGAATCCTTAATGGCCAAGATAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040D10-          TGTTTCATTCCTATCCATTCTTCCACATGCCTATCACACCTTGTCTTGCAGGTAGGCTAG
rJMSF039D10-          TGTTTCATTCCTATCCATTCTTCCACATGCCTATCACACCTTGTCTTGCAGGTAGGCTAG
JMSF040D10+           TGTTTCATTCCTATCCATTCTTCCACATGCCTATCACACCTTGTCTTGCAGGTAGGCTAG
JMSF039D10+           TGTTTCATTCCTATCCATTCTTCCACATGCCTATCACACCTTGTCTTGCAGGTAGGCTAG
JMFN017N09+           TGTTTCATTCCTATCCATTCTTCCACATGCCTATCACACCTTGTCTTGCAGGTAGGCTAG
                      ____________________________________________________________
consensus             TGTTTCATTCCTATCCATTCTTCCACATGCCTATCACACCTTGTCTTGCAGGTAGGCTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040D10-          AATAAACACTGCCAGAGCTCCCAAGGAAACCCCTAGTAAAGGACCTGCAGGGACTAGTTT
rJMSF039D10-          AATAAACACTGCCAGAGCTCCCAAGGAAACCCCTAGTAAAGGACCTGCAGGGACTAGTTT
JMSF040D10+           AATAAACACTGCCAGAGCTCCCAAGGAAACCCCTAGTAAAGGACCTGCAGGGACTAGTTT
JMSF039D10+           AATAAACACTGCCAGAGCTCCCAAGGAAACCCCTAGTAAAGGACCTGCAGGGACTAGTTT
JMFN017N09+           AATAAACACTGCCAGAGCTCCCAAGGAAACCCCTAGTAAAGGACCTGCAGGGACTAGTTT
                      ____________________________________________________________
consensus             AATAAACACTGCCAGAGCTCCCAAGGAAACCCCTAGTAAAGGACCTGCAGGGACTAGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040D10-          GCGGGAAGCACCCAACCGTATTCCGAATACACAAGCAAAGAGGAGAGCCGATCCGAATGC
rJMSF039D10-          GCGGGAAGCACCCAACCGTATTCCGAATACACAAGCAAAGAGGAGAGCCGATCCGAATGC
JMSF040D10+           GCGGGAAGCACCCAACCGTATTCCGAATACACAAGCAAAGAGGAGAGCCGATCCGAATGC
JMSF039D10+           GCGGGAAGCACCCAACCGTATTCCGAATACACAAGCAAAGAGGAGAGCCGATCCGAATGC
JMFN017N09+           GCGGGAAGCACCCAACCGTATTCCGAATACACAAGCAAAGAGGAGAGCCGATCCGAATGC
                      ____________________________________________________________
consensus             GCGGGAAGCACCCAACCGTATTCCGAATACACAAGCAAAGAGGAGAGCCGATCCGAATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040D10-          TAGGGCATCACCTAATTCCTTTGTCTCGGATGCTTGCATCAGAAAATAAGCTGTACCCAT
rJMSF039D10-          TAGGGCATCACCTAATTCCTTTGTCTCGGATGCTTGCATCAGAAAATAAGCTGTACCCAT
JMSF040D10+           TAGGGCATCACCTAATTCCTTTGTCTCGGATGCTTGCATCAGAAAATAAGCTGTACCCAT
JMSF039D10+           TAGGGCATCACCTAATTCCTTTGTCTCGGATGCTTGCATCAGAAAATAAGCTGTACCCAT
JMFN017N09+           TAGGGCATCACCTAATTCCTTTGTCTCGGATGCTTGCATCAGAAAATAAGCTGTACCCAT
                      ____________________________________________________________
consensus             TAGGGCATCACCTAATTCCTTTGTCTCGGATGCTTGCATCAGAAAATAAGCTGTACCCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040D10-          AAGTCCAGCACCGGTTAAGCCGCCCAGAAGTGAGCCCTTACTTCCAGATCTTGTATAGGC
rJMSF039D10-          AAGTCCAGCACCGGTTAAGCCGCCCAGAAGTGAGCCCTTACTTCCAGATCTTGTATAGGC
JMSF040D10+           AAGTCCAGCACCGGTTAAGCCGCCCAGAAGTGAGCCCTTACTTCCAGATCTTGTATAGGC
JMSF039D10+           AAGTCCAGCACCGGTTAAGCCGCCCAGAAGTGAGCCCTTACTTCCAGATCTTGTATAGGC
JMFN017N09+           AAGTCCAGCACCGGTTAAGCCGCCCAGAAGTGAGCCCTTACTTCCAGATCTTGTATAGGC
                      ____________________________________________________________
consensus             AAGTCCAGCACCGGTTAAGCCGCCCAGAAGTGAGCCCTTACTTCCAGATCTTGTATAGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040D10-          AAAGAGGCCGCCACCAAACAAAGGCGTTCCATAAGCTGCAGAGGTTAGAGGTGCGAGGTC
rJMSF039D10-          AAAGAGGCCGCCACCAAACAAAGGCGTTCCATAAGCTGCAGAGGTTAGAGGTGCGAGGTC
JMSF040D10+           AAAGAGGCCGCCACCAAACAAAGGCGTTCCATAAGCTGCAGAGGTTAGAGGTGCGAGGTC
JMSF039D10+           AAAGAGGCCGCCACCAAACAAAGGCGTTCCATAAGCTGCAGAGGTTAGAGGTGCGAGGTC
JMFN017N09+           AAAGAGGCCGCCACCAAACAAAAGCGTTCCATAAGCTGCAGAGGTTAGAGGTGCGAGGTC
                      ____________________________________________________________
consensus             AAAGAGGCCGCCACCAAACAAAGGCGTTCCATAAGCTGCAGAGGTTAGAGGTGCGAGGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040D10-          TATGGTTGTCAGCTGACAGATACAGCGGAGACCGGTTGTCGCAGTGGCGGAAGGCTGTCG
rJMSF039D10-          TATGGTTGTCAGCTGACAGATACAGCGGAGACCGGTTGTCGCAGTGGCGGAAGGCTGTCG
JMSF040D10+           TATGGTTGTCAGCTGACAGATACAGCGGAGACCGGTTGTCGCAGTGGCGGAAGGCTGTCG
JMSF039D10+           TATGGTTGTCAGCTGACAGATACAGCGGAGACCGGTTGTCGCAGTGGCGGAAGGCTGTCG
JMFN017N09+           TATGGTTGTCAGCTGACAGATACAGCGGAGACCGGTTGTCGCAGTGGCGGAAGGCTGTCG
                      ____________________________________________________________
consensus             TATGGTTGTCAGCTGACAGATACAGCGGAGACCGGTTGTCGCAGTGGCGGAAGGCTGTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040D10-          GCGTTTCTGGGCCGGAAATCTTAGTGCATCTAAGGTGGTAATGGTAGAAGAAATGCGGGA
rJMSF039D10-          GCGTTTCTGGGCCGGAAATCTTAGTGCATCTAAGGTGGTAATGGTAGAAGAAATGCGGGA
JMSF040D10+           GCGTTTCTGGGCCGGAAATCTTAGTGCATCTAAGGTGGTAATGGTAGAAGAAATGCGGGA
JMSF039D10+           GCGTTTCTGGGCCGGAAATCTTAGTGCATCTAAGGTGGTAATGGTAGAAGAAATGCGGGA
JMFN017N09+           GCGTTTCTGGGCCGGAAATCTTAGTGCATCTAAGGTGGTAATGGTAGAAGAAATGCGGGA
                      ____________________________________________________________
consensus             GCGTTTCTGGGCCGGAAATCTTAGTGCATCTAAGGTGGTAATGGTAGAAGAAATGCGGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040D10-          TAAAGATGGTCTTGTAGGAAGCGGCGAGAAGATGCTGACATTGCTGCAAGAACCCATCGT
rJMSF039D10-          TAAAGATGGTCTTGTAGGAAGCGGCGAGAAGATGCTGACATTGCTGCAAGAACCCATCGT
JMSF040D10+           TAAAGATGGTCTTGTAGGAAGCGGCGAGAAGATGCTGACATTGCTGCAAGAACCCATCGT
JMSF039D10+           TAAAGATGGTCTTGTAGGAAGCGGCGAGAAGATGCTGACATTGCTGCAAGAACCCATCGT
JMFN017N09+           TAAAGATGGTCTTGTAGGAAGCGGCGAGAAGATGCTGACATTGCTGCAAGAACCCATCGT
                      ____________________________________________________________
consensus             TAAAGATGGTCTTGTAGGAAGCGGCGAGAAGATGCTGACATTGCTGCAAGAACCCATCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF040D10-          CTCCCCCGTGAACACTGCC                                         
rJMSF039D10-          CTCCCCCGTGAACACTGCC                                         
JMSF040D10+           CTCCCCCGTGAACACTGCC                                         
JMSF039D10+           CTCCCCCGTGAACACTGCC                                         
JMFN017N09+           CTCCCCCGTGAACACTGCAATTCCGGCGATAATCCCGGTTTTTTTAAAAATAAATTTTAC
                      ____________________________________________________________
consensus             CTCCCCCGTGAACACTGCCATTCCGGCGATAATCCCGGTTTTTTTAAAAATAAATTTTAC