Contig 001828:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN017J08Sequence637001828 (5)ref|XP_009762360.1|275PREDICTED: uncharacterized protein LOC104214399 [Nicotiana sylvestris]
JMFN039K18Sequence635001828 (5)ref|XP_009762360.1|192PREDICTED: uncharacterized protein LOC104214399 [Nicotiana sylvestris]
JMFS008B10Sequence505001828 (5)ref|XP_009762360.1|223PREDICTED: uncharacterized protein LOC104214399 [Nicotiana sylvestris]
JMSF050A24Sequence654001828 (5)ref|XP_009762360.1|275PREDICTED: uncharacterized protein LOC104214399 [Nicotiana sylvestris]643001828 (5)ref|XP_009762360.1|275PREDICTED: uncharacterized protein LOC104214399 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF050A24+                                            ATTCAACAGACAGACAACCATGTTTCA
rJMSF050A24-                                                                GTTTCA
                      ____________________________________________________________
consensus                                              ATTCAACAGACAGACAACCATGTTTCA
 
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JMSF050A24+           AAACTATTTGGTTTTCAATAATCTATGTACATGTGTGAAATCTAACATCTCATACAGATT
rJMSF050A24-          AAACTATTTGGTTTTCAATAATCTATGTACATGTGTGAAATCTAACATCTCATACAGATT
                      ____________________________________________________________
consensus             AAACTATTTGGTTTTCAATAATCTATGTACATGTGTGAAATCTAACATCTCATACAGATT
 
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JMSF050A24+           ATTCTTTCTACTAGAGATTTGTTCACTCCAACAAGTCAACAACCTCCATTGGAGGGTTCA
JMFS008B10+                                                                GGGTTCA
rJMSF050A24-          ATTCTTTCTACTAGAGATTTGTTCACTCCAACAAGTCAACAACCTCCATTGGAGGGTTCA
JMFN039K18+                                                                GGGTTCA
JMFN017J08+                                                                GGGTTCA
                      ____________________________________________________________
consensus             ATTCTTTCTACTAGAGATTTGTTCACTCCAACAAGTCAACAACCTCCATTGGAGGGTTCA
 
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JMSF050A24+           ATTGAGCTCAATAGGCCATTGCCTCTCAGCTGCATGCAATGTTCTTCTGCATCTACTTGG
JMFS008B10+           ATTGAGCTCAATAGGCCATTGCCTCTCAGCTGCATGCAATGTTCTTCTGCATCTACTTGG
rJMSF050A24-          ATTGAGCTCAATAGGCCATTGCCTCTCAGCTGCATGCAATGTTCTTCTGCATCTACTTGG
JMFN039K18+           ATTGAGCTCAATAGGCCATTGCCTCTCAGCTGCATGCAATGTTCTTCTGCATCTACTTGG
JMFN017J08+           ATTGAGCTCAATAGGCCATTGCCTCTCAGCTGCATGCAATGTTCTTCTGCATCTACTTGG
                      ____________________________________________________________
consensus             ATTGAGCTCAATAGGCCATTGCCTCTCAGCTGCATGCAATGTTCTTCTGCATCTACTTGG
 
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JMSF050A24+           GGACAGATAATGACCACTGAGAGGCCATTGTAATGTGCCTCTTGCATGATATTTACAGCG
JMFS008B10+           GGACAGATAATGACCACTGAGAGGCCATTGTAATGTGCCTCTTGCATGATATTTACAGCG
rJMSF050A24-          GGACAGATAATGACCACTGAGAGGCCATTGTAATGTGCCTCTTGCATGATATTTACAGCG
JMFN039K18+           GGACAGATAATGACCACTGAGAGGCCATTGTAATGTGCCTCTTGCATGATATTTACAGCG
JMFN017J08+           GGACAGATAATGACCACTGAGAGGCCATTGTAATGTGCCTCTTGCATGATATTTACAGCG
                      ____________________________________________________________
consensus             GGACAGATAATGACCACTGAGAGGCCATTGTAATGTGCCTCTTGCATGATATTTACAGCG
 
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JMSF050A24+           TTGTCGACGGTCATCCCTGGTATGACCTTCATAAGGACTTGGACAACGTACTCCCTCCTG
JMFS008B10+           TTGTCGACGGTCATCCCTGGTATGACCTTCATAAGGACTTGGACAACGTACTCCCTCCTG
rJMSF050A24-          TTGTCGACGGTCATCCCTGGTATGACCTTCATAAGGACTTGGACAACGTACTCCCTCCTG
JMFN039K18+           TTGTCGACGGTCATCCCTGGTATGACCTTCATAAGGACTTGGACAACGTACTCCCTCCTG
JMFN017J08+           TTGTCGACGGTCATCCCTGGTATGACCTTCATAAGGACTTGGACAACGTACTCCCTCCTG
                      ____________________________________________________________
consensus             TTGTCGACGGTCATCCCTGGTATGACCTTCATAAGGACTTGGACAACGTACTCCCTCCTG
 
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JMSF050A24+           TTGTAATCGTCGTTATGCAACAGCACACGATATGATGGGGACATTTTCCGGGACTTTCTC
JMFS008B10+           TTGTAATCGTCGTTATGCAACAGCACACGATATGATGGGGACATTTTCCGGGACTTTCTC
rJMSF050A24-          TTGTAATCGTCGTTATGCAACAGCACACGATATGATGGGGACATTTTCCGGGACTTTCTC
JMFN039K18+           TTGTAATCGTCGTTATGCAACAGCACACGATATGATGGGGACATTTTCCGGGACTTTCTC
JMFN017J08+           TTGTAATCGTCGTTATGCAACAGCACACGATATGATGGGGACATTTTCCGGGACTTTCTC
                      ____________________________________________________________
consensus             TTGTAATCGTCGTTATGCAACAGCACACGATATGATGGGGACATTTTCCGGGACTTTCTC
 
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JMSF050A24+           AAATCAAACTCAGATTCTCGACCAGGAGTTG-TTTTTTCTATTACAGGCTTGTCCAACAA
JMFS008B10+           AAATCAAACTCAGATTCTCGACCAGGAGTTG-TTTTTTCTATTACAGGCTTGTCCAACAA
rJMSF050A24-          AAATCAAACTCAGATTCTCGACCAGGAGTTG-TTTTTTCTATTACAGGCTTGTCCAACAA
JMFN039K18+           AAATCAAACTCAGATTCTCGACCAGGAGTTGTTTTTTTCTATTACAGGCTTGTCCAACAA
JMFN017J08+           AAATCAAACTCAGATTCTCGACCAGGAGTTG-TTTTTTCTATTACAGGCTTGTCCAACAA
                      ____________________________________________________________
consensus             AAATCAAACTCAGATTCTCGACCAGGAGTTG-TTTTTTCTATTACAGGCTTGTCCAACAA
 
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JMSF050A24+           GCCACCACCTTTTCCCACTCCTGCAATCGGCATTGCCATTACATTCCGGATTGCCCATTG
JMFS008B10+           GCCACCACCTTTTCCCACTCCTGCAATCG                               
rJMSF050A24-          GCCACCACCTTTTCCCACTCCTGCAATCGGCATTGCCATTACATTCCGGATTGCCCATTG
JMFN039K18+           GCCACCACCTTTTCCCACTCCTGCAATCGGCATTGCCATTACATTCCGGATTGCCCATTG
JMFN017J08+           GCCACCACCTTTTCCCACTCCTGCAATCGGCATTGCCATTACATTCCGGATTGCCCATTG
                      ____________________________________________________________
consensus             GCCACCACCTTTTCCCACTCCTGCAATCGGCATTGCCATTACATTCCGGATTGCCCATTG
 
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JMSF050A24+           TTTTTGAAAATGGTTCTTATCACCGGGTTTAGGGTGTGAGAAATGGTTGGGAGAGAGAGA
rJMSF050A24-          TTTTTGAAAATGGTTCTTATCACCGGGTTTAGGGTGTGAGAAATGGTTGGGAGAGAGAGA
JMFN039K18+           TTTTTGAAAATGGTTCTTATCACCGGGTTTAGGGTGTGAGAAATGGTTGGGAGAGAGAGA
JMFN017J08+           TTTTTGAAAATGGTTCTTATCACCGGGTTTAGGGTGTGAGAAATGGTTGGGAGAGAGAGA
                      ____________________________________________________________
consensus             TTTTTGAAAATGGTTCTTATCACCGGGTTTAGGGTGTGAGAAATGGTTGGGAGAGAGAGA
 
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JMSF050A24+           AATTCGACCGCAAATCGCAGTCTCCAT                                 
rJMSF050A24-          AATTCGACCGCAAATCGCAGTCTCCAT                                 
JMFN039K18+           AATTCGACCGCAAATCGCAGTCTCCATTGTAATGCACCACTCCCTCTAGCTCCGATTCTG
JMFN017J08+           AATTCGACCGCAAATCGCAGTCTCCATTGTAATGCACCACTCCCTCTAGCTCCGATTCTG
                      ____________________________________________________________
consensus             AATTCGACCGCAAATCGCAGTCTCCATTGTAATGCACCACTCCCTCTAGCTCCGATTCTG