| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005C23 | Sequence | 487 | 001823 (4) | ref|XP_009782733.1| | 4e-52 | PREDICTED: glycerophosphodiester phosphodiesterase GDE1-like [Nicotiana sylvest | 708 | 005336 (3) | ref|XP_004492997.1| | 2e-73 | PREDICTED: glycerophosphodiester phosphodiesterase GDE1-like [Cicer arietinum] |
| JMFF007O06 | Sequence | 589 | 001823 (4) | ref|XP_009782733.1| | 2e-69 | PREDICTED: glycerophosphodiester phosphodiesterase GDE1-like [Nicotiana sylvest | 739 | 005336 (3) | ref|XP_006373136.1| | 2e-74 | hypothetical protein POPTR_0017s09050g [Populus trichocarpa] gb|ERP50933.1| hypo |
| JMFF021B07 | Sequence | 486 | 001823 (4) | ref|XP_009782733.1| | 9e-53 | PREDICTED: glycerophosphodiester phosphodiesterase GDE1-like [Nicotiana sylvest | 634 | 005336 (3) | ref|XP_009124822.1| | 1e-64 | PREDICTED: glycerophosphodiester phosphodiesterase GDE1 [Brassica rapa] |
| JMFN013F19 | Sequence | 646 | 001823 (4) | ref|XP_009782733.1| | 4e-67 | PREDICTED: glycerophosphodiester phosphodiesterase GDE1-like [Nicotiana sylvest | |||||
This contig is upended
. : . : . : . : . : . :
JMFF021B07+ TTCTCCCAGGC
JMFF005C23+ CCCAGGC
____________________________________________________________
consensus TTCTCCCAGGC
. : . : . : . : . : . :
JMFF021B07+ TCAAATCCGTTACCCTCTTCTCAACTGTAACGCCATTTTGCTGGGAAAGTATGAAGTCAT
JMFF005C23+ TCAAATCCGTTACCCTCTTCTCAACTGTAACGCCATTTTGCTGGGAAAGTATGAAGTCAT
____________________________________________________________
consensus TCAAATCCGTTACCCTCTTCTCAACTGTAACGCCATTTTGCTGGGAAAGTATGAAGTCAT
. : . : . : . : . : . :
JMFF007O06+ ACCTGAACATCAAACTCTATGAAATCCA
JMFF021B07+ CGTGGAAAATGACAGGGCAGCCGTCTTTTGTCACCTGAACATCAAACTCTATGAAATCCA
JMFF005C23+ CGTGGAAAATGACAGGGCAGCCGTCTTTTGTCACCTGAACATCAAACTCTATGAAATCCA
JMFN013F19+ ACCTGAACATCAAACTCTATGAAATCCA
____________________________________________________________
consensus CGTGGAAAATGACAGGGCAGCCGTCTTTTGTCACCTGAACATCAAACTCTATGAAATCCA
. : . : . : . : . : . :
JMFF007O06+ CGGGGTATTTGGCGGCAGCATTGAAAGAAACAATGGAGTTCTCCTTGACAGCCGTCAATC
JMFF021B07+ CGGGGTATTTGGCGGCAGCATTGAAAGAAACAATGGAGTTCTCCTTGACAGCCGTCAATC
JMFF005C23+ CGGGGTATTTGGCGGCAGCATTGAAAGAAACAATGGAGTTCTCCTTGACAGCCGTCAATC
JMFN013F19+ CGGGGTATTTGGCGGCAGCATTGAAAGAAACAATGGAGTTCTCCTTGACAGCCGTCAATC
____________________________________________________________
consensus CGGGGTATTTGGCGGCAGCATTGAAAGAAACAATGGAGTTCTCCTTGACAGCCGTCAATC
. : . : . : . : . : . :
JMFF007O06+ TCCGATCCGACGACTGCAAAACATTCATCCCGCTCCCTCTGTGCCCGACCACCAGAAACT
JMFF021B07+ TCCGATCCGACGACTGCAAAACATTCATCCCGCTCCCTCTGTGCCCGACCACCAGAAACT
JMFF005C23+ TCCGATCCGACGACTGCAAAACATTCATCCCGCTCCCTCTGTGCCCGACCACCAGAAACT
JMFN013F19+ TCCGATCCGACGACTGCAAAACATTCATCCCGCTCCCTCTGTGCCCGACCACCAGAAACT
____________________________________________________________
consensus TCCGATCCGACGACTGCAAAACATTCATCCCGCTCCCTCTGTGCCCGACCACCAGAAACT
. : . : . : . : . : . :
JMFF007O06+ TGGGCGGCTTGTACGCCACTTTCCCCACCATTTCAACGCTTTGTGAGAAGGCGGCGGCGG
JMFF021B07+ TGGGCGGCTTGTACGCCACTTTCCCCACCATTTCAACGCTTTGTGAGAAGGCGGCGGCGG
JMFF005C23+ TGGGCGGCTTGTACGCCACTTTCCCCACCATTTCAACGCTTTGTGAGAAGGCGGCGGCGG
JMFN013F19+ TGGGCGGCTTGTACGCCACTTTCCCCACCATTTCAACGCTTTGTGAGAAGGCGGCGGCGG
____________________________________________________________
consensus TGGGCGGCTTGTACGCCACTTTCCCCACCATTTCAACGCTTTGTGAGAAGGCGGCGGCGG
. : . : . : . : . : . :
JMFF007O06+ AATAGAGAGGCGAGGAGGAGGCATTAGGAACGTCGGAGACATGAACCGCCTTGAGCGCCA
JMFF021B07+ AATAGAGAGGCGAGGAGGAGGCATTAGGAACGTCGGAGACATGAACCGCCTTGAGCGCCA
JMFF005C23+ AATAGAGAGGCGAGGAGGAGGCATTAGGAACGTCGGAGACATGAACCGCCTTGAGCGCCA
JMFN013F19+ AATAGAGAGGCGAGGAGGAGGCATTAGGAACGTCGGAGACATGAACCGCCTTGAGCGCCA
____________________________________________________________
consensus AATAGAGAGGCGAGGAGGAGGCATTAGGAACGTCGGAGACATGAACCGCCTTGAGCGCCA
. : . : . : . : . : . :
JMFF007O06+ TGCTTCTTCTACAACAACTCACAGAGGTTTAATAATAATATAATTACAATGCAGAATTGC
JMFF021B07+ TGCTTCTTCTACAACAACTCACAGAGGTTTAATAATAATATAATTACAATGCAGAATTGC
JMFF005C23+ TGCTTCTTCTACAACAACTCACAGAGGTTTAATAATAATATAATTACAATGCAGAATTGC
JMFN013F19+ TGCTTCTTCTACAACAACTCACAGAGGTTTAATAATAATATAATTACAATGCAGAATTGC
____________________________________________________________
consensus TGCTTCTTCTACAACAACTCACAGAGGTTTAATAATAATATAATTACAATGCAGAATTGC
. : . : . : . : . : . :
JMFF007O06+ AGAGAGAGAGAGAGATTTGAGAAATAGAATTGGGAATGGGAATGGGAATGGGAAT
JMFF021B07+ AGAGAGAGAGAGAGATTTGAGAAATAGAATTGGGAATGGGAATGGGAATGGGAAT
JMFF005C23+ AGAGAGAGAGAGAGATTTGAGAAATAGAATTGGGAATGGGAATGGGAATGGGAAT
JMFN013F19+ AGAGAGAGAGAGAGATTTGAGAAATAGAATTGGGAATGGGAATGGGAATGGGAATGAGAC
____________________________________________________________
consensus AGAGAGAGAGAGAGATTTGAGAAATAGAATTGGGAATGGGAATGGGAATGGGAATGAGAC
. : . : . : . : . : . :
JMFN013F19+ AAGGTAGGTTGCGTTTGGGGGAGATTTAAACAATGAGCCGGGAAAGGAGGAGGAACCAAA
____________________________________________________________
consensus AAGGTAGGTTGCGTTTGGGGGAGATTTAAACAATGAGCCGGGAAAGGAGGAGGAACCAAA