Contig 001822:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043G24Sequence622015301ref|XP_006342077.1|3e-56PREDICTED: E3 ubiquitin-protein ligase ATL23-like [Solanum tuberosum]556001822 (2)ref|XP_006342077.1|1e-56PREDICTED: E3 ubiquitin-protein ligase ATL23-like [Solanum tuberosum]
JMFN011P05Sequence634001822 (2)ref|XP_006342077.1|3e-56PREDICTED: E3 ubiquitin-protein ligase ATL23-like [Solanum tuberosum]

Alignment

This contig is upended


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JMFN011P05-                                     CGAAAAATGGTGTGAGCTATCTACGGCCGCTATA
                      ____________________________________________________________
consensus                                       CGAAAAATGGTGTGAGCTATCTACGGCCGCTATA
 
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JMFN011P05-           CTCCAAAACGTACTCCGTCCCTACCGCCTTTTCCGCTAGCAAAAATACGGCGGCGCCCGC
                      ____________________________________________________________
consensus             CTCCAAAACGTACTCCGTCCCTACCGCCTTTTCCGCTAGCAAAAATACGGCGGCGCCCGC
 
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JMFN011P05-           AGTTTTCTCTGCGTTCGACAAAAACAATGTTGTTCTCCGTGTTTCTCGCCCTCTTTCTGC
                      ____________________________________________________________
consensus             AGTTTTCTCTGCGTTCGACAAAAACAATGTTGTTCTCCGTGTTTCTCGCCCTCTTTCTGC
 
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JMFN011P05-           CATGCGTCGGCATGTCCGTAGTGCTGGTGGTCTACTTCTGCTTGCTCTGGTACGCCGCCA
                      ____________________________________________________________
consensus             CATGCGTCGGCATGTCCGTAGTGCTGGTGGTCTACTTCTGCTTGCTCTGGTACGCCGCCA
 
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JMFN011P05-           CATACAACGCCGGCGGCGGCGGAAACGGCCAGTACGCGGTGAAGAGCACTCAGCAGACGG
                      ____________________________________________________________
consensus             CATACAACGCCGGCGGCGGCGGAAACGGCCAGTACGCGGTGAAGAGCACTCAGCAGACGG
 
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rJMFF043G24+            CTCTCCGCCACGCAGCTGGAGAAGCTGCCGAAAATCACCGGGAAGGATTTGGTTCTGG
JMFN011P05-           GTCTCTCCGCCACGCAGCTGGAGAAGCTGCCGAAAATCACCGGGAAGGATTTGGTTCTGG
                      ____________________________________________________________
consensus             GTCTCTCCGCCACGCAGCTGGAGAAGCTGCCGAAAATCACCGGGAAGGATTTGGTTCTGG
 
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rJMFF043G24+          GGAACGATTGCGCTGTTTGCTTGGACAATATCGGGAGCGACGAACCGGCTCGGCTGGTCC
JMFN011P05-           GGAACGATTGCGCTGTTTGCTTGGACAATATCGGGAGCGACGAACCGGCTCGGCTGGTCC
                      ____________________________________________________________
consensus             GGAACGATTGCGCTGTTTGCTTGGACAATATCGGGAGCGACGAACCGGCTCGGCTGGTCC
 
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rJMFF043G24+          CCGGTTGCAACCACGGGTTCCATTTAGAATGCGCCGATACGTGGCTGGCAAAGCACCCGG
JMFN011P05-           CCGGTTGCAACCACGGGTTCCATTTAGAATGCGCCGATACGTGGCTGGCAAAGCACCCGG
                      ____________________________________________________________
consensus             CCGGTTGCAACCACGGGTTCCATTTAGAATGCGCCGATACGTGGCTGGCAAAGCACCCGG
 
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rJMFF043G24+          TTTGCCCGATTTGCAGAACCAAGCTCGGACCGGAGCTCTTCGACCCGCC           
JMFN011P05-           TTTGCCCGATTTGCAGAACCAAGCTCGGACCGGAGCTCTTCGACCCGCCGGAAACTAACC
                      ____________________________________________________________
consensus             TTTGCCCGATTTGCAGAACCAAGCTCGGACCGGAGCTCTTCGACCCGCCGGAAACTAACC
 
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JMFN011P05-           CCTGCTGAGCTGACGGGTTTCAGTTCCTGTGGGCTGTGGATAAGTTTCAGGTTATGGGTA
                      ____________________________________________________________
consensus             CCTGCTGAGCTGACGGGTTTCAGTTCCTGTGGGCTGTGGATAAGTTTCAGGTTATGGGTA
 
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JMFN011P05-           GTCCTATTTTCTTTATCTNTTATCTTTATTTCCGNTACTAGGAAACAAAAACCAAAAAAA
                      ____________________________________________________________
consensus             GTCCTATTTTCTTTATCTNTTATCTTTATTTCCGNTACTAGGAAACAAAAACCAAAAAAA