Contig 001818:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN011F06Sequence624001818 (4)ref|XP_006356202.1|6e-92PREDICTED: trafficking protein particle complex subunit 2-like isoform X1 [Sola
JMFN033G12Sequence513001818 (4)ref|XP_011034559.1|4e-32PREDICTED: trafficking protein particle complex subunit 2-like, partial [Populu
JMFN043K16Sequence616001818 (4)ref|XP_006356202.1|1e-90PREDICTED: trafficking protein particle complex subunit 2-like isoform X1 [Sola
JMSF032H13Sequence614001818 (4)ref|XP_006356202.1|2e-83PREDICTED: trafficking protein particle complex subunit 2-like isoform X1 [Sola

Alignment

This contig is upended


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JMFN043K16+                     CGATAGTCTGAGACTAAATTTGGAATTGCCACCAAAGACAAGGGACCTCT
                      ____________________________________________________________
consensus                       CGATAGTCTGAGACTAAATTTGGAATTGCCACCAAAGACAAGGGACCTCT
 
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JMFN043K16+           GGTGGAATTAACTCTTCAAAAAAAATTGATAGATACCCTTTTGCAGCAAAGAGAGCTCCG
                      ____________________________________________________________
consensus             GGTGGAATTAACTCTTCAAAAAAAATTGATAGATACCCTTTTGCAGCAAAGAGAGCTCCG
 
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JMSF032H13+                                 ATATATGATGCTGCTGTAGATCGACGCCTCAGGCAGAG
JMFN043K16+           GGTGTAGATTTTCTTGGTACATATATATGATGCTGCTGTAGATCGACGCCTCAGGCAGAG
JMFN011F06+                                 ATATATGATGCTGCTGTAGATTGGAGCCTCAGGCAGAG
                      ____________________________________________________________
consensus             GGTGTAGATTTTCTTGGTACATATATATGATGCTGCTGTAGATCGACGCCTCAGGCAGAG
 
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JMSF032H13+           --TCAGTTTTTTGTGCTTCAGAGGTACTTTCTGGCGAGA-GCTCTAACCTTTGTATCAAA
JMFN043K16+           --TCAGTTTTTTGTGCTTCAGAGGTACTTTCTGGCGAGA-GCTCTAACCTTTGTATCAAA
JMFN033G12+            GTCAGTTTTTTGTTCTTCAGAGGTGCTTTGTGGGGAGAGGCTGTAACCTTTGTATCAAA
JMFN011F06+           TCTCAGTTTTTTGTGCTTCAGAGGTACTTTCTGGCGAGA-GCTCTAACCTTTGTATCAAA
                      ____________________________________________________________
consensus             --TCAGTTTTTTGTGCTTCAGAGGTACTTTCTGGCGAGA-GCTCTAACCTTTGTATCAAA
 
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JMSF032H13+           ATGAGATGATGTAATTCGAGATCCAGTTAAGTAGAGGGGATTAAGCAGAGTCTTTATATA
JMFN043K16+           ATGAGATGATGTAATTCGAGATCCAGTTAAGTAGAGGGGATTAAGCAGAGTCTTTATATA
JMFN033G12+           ATGAGATGATGTAATTGGAGATCCGGGTAAGTAGAGGGGATTAAGCAGAGTCTTTATATA
JMFN011F06+           ATGAGATGATGTAATTCGAGATCCAGGTAAGTAGAGGGGATTAAGCAGAGTCTTTATATA
                      ____________________________________________________________
consensus             ATGAGATGATGTAATTCGAGATCCAGTTAAGTAGAGGGGATTAAGCAGAGTCTTTATATA
 
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JMSF032H13+           AAGCTCATGAACTTCTTGGAAGAAGCTTTTGATCCCATCATCATTGC-GAGAATCGTGAA
JMFN043K16+           AAGCTCATGAACTTCTTGGAAGAAGCTTTTGATCCCATCATCATTGC-GAGAATCGTGAA
JMFN033G12+           AAGCTCATGAACTTCTTGGAAGAAGCTTTTGATCCCATCATCATTGCGGAGGATCGTGAA
JMFN011F06+           AAGCTCATGAACTTCTTGGAAGAAGCTTTTGATCCCATCATCATTGC-GAGAATCGTGAA
                      ____________________________________________________________
consensus             AAGCTCATGAACTTCTTGGAAGAAGCTTTTGATCCCATCATCATTGC-GAGAATCGTGAA
 
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JMSF032H13+           GCAGCATCAGTCGTGTATGACCTGCAGTGACATATACTGAAACTGCCAAATCATTGAACC
JMFN043K16+           GCAGCATCAGTCGTGTATGACCTGCAGTGACATATACTGAAACTGCCAAATCATTGAACC
JMFN033G12+           ACAGCATCAGTCGTGTATGGCCTGCAGTGGCATATACGGAATCTGCCAAATCATGGAACC
JMFN011F06+           GCAGCATCAGTCGTGTATGACCTGCAGTGACATATACTGAAACTGCCAAATCATTGAACC
                      ____________________________________________________________
consensus             GCAGCATCAGTCGTGTATGACCTGCAGTGACATATACTGAAACTGCCAAATCATTGAACC
 
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JMSF032H13+           GGTCAATTGCCTTCAGGAACATTGCACTGGTAGTCCACGCCAGATCCTGCACAATGTCTA
JMFN043K16+           GGTCAATTGCCTTCAGGAACATTGCACTGGTAGTCCACGCCAGATCCTGCACAATGTCTA
JMFN033G12+           GGTCAATTGCCTTCAGGAACATTGCGCTGGTAGTCCATGCCAGATCCTGCACAATGTCTA
JMFN011F06+           GGTCAATTGCCTTCAGGAACATTGCACTGGTAGTCCATGCCAGATCCTGCACAATGTCTA
                      ____________________________________________________________
consensus             GGTCAATTGCCTTCAGGAACATTGCACTGGTAGTCCATGCCAGATCCTGCACAATGTCTA
 
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JMSF032H13+           ATGCGGCANGTAATATGAACTGGTGCTGATGAGAAGCATCCTCTTTNTTAGGTGCAGTTC
JMFN043K16+           ATGCGGCATGTAATATGAACTGGTGCTGATGAGAAGCATCCTCTTTTTTAGGTGCAGTTC
JMFN033G12+           ATGCTGCATGTAATATGAGCTGGTGGTGATGAGCAGCATCCTCTTTTTTAGGTGCAGTTC
JMFN011F06+           ATGCTGCATGTAATATGAACTGGTGCTGATGAGCAGCATCCTCTTTTTTAGGTGCAGTTC
                      ____________________________________________________________
consensus             ATGCTGCATGTAATATGAACTGGTGCTGATGAGCAGCATCCTCTTTTTTAGGTGCAGTTC
 
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JMSF032H13+           CAACTTNGGCTTCGTAGATGGGAANGTCGTTCCTGCTTACAATCATAAAACACGC     
JMFN043K16+           CAACTTCGGCTTCGTAGATGGGAATGTCGTTCCTGCTTACAATCATAAAACACGCCGTAG
JMFN033G12+           CAAGTTCGGCTT-GTAGATGGGAATGTCGTTCCTGCTTACGATCATAAAACACGC     
JMFN011F06+           CAACTTCGGCTTCGTAGATGGGAATGTCGTTCCTGCTTACGATCATAAAACACGCCGTAC
                      ____________________________________________________________
consensus             CAACTTCGGCTTCGTAGATGGGAATGTCGTTCCTGCTTACGATCATAAAACACGCCGTAG
 
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JMFN043K16+           TCGCCATTCCTTTCGTCCCCTCGAATCCCC                              
JMFN011F06+           TCGCCATCCCTTTCGTCTCCTCGAATCCCCAAACCTGCAACTCAACAACTGCCCGTTTAC
                      ____________________________________________________________
consensus             TCGCCATTCCTTTCGTCTCCTCGAATCCCCAAACCTGCAACTCAACAACTGCCCGTTTAC