Contig 001817:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF028I14Sequence508004570 (2)ref|XP_009618300.1|2e-10PREDICTED: probable xyloglucan glycosyltransferase 12 [Nicotiana tomentosiformi666001817 (3)ref|XP_010061616.1|1e-38PREDICTED: probable xyloglucan glycosyltransferase 12 [Eucalyptus grandis] gb|K
JMFN011E05Sequence608001817 (3)ref|XP_010061616.1|3e-48PREDICTED: probable xyloglucan glycosyltransferase 12 [Eucalyptus grandis] gb|K
JMFS050H09Sequence336001817 (3)

Alignment

This contig is upended


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JMFS050H09+                                         AACTGTGACAATATCTCGTGTTGTTTGATG
rJMFF028I14-                                                  ATATCTCGTGTTGTTTGATG
                      ____________________________________________________________
consensus                                           AACTGTGACAATATCTCGTGTTGTTTGATG
 
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JMFS050H09+           TTTCAACTGACAAATTCTTCTTACAAAAGAATGTAGCAAGGAAAAAACGAAAGAATCCGA
rJMFF028I14-          TTTCAACTGACAAATTCTTCTTACAAAAGAATGTAGCAAGGAAAAAACGAAAGAATCCGA
JMFN011E05+                                                               GAATCCGA
                      ____________________________________________________________
consensus             TTTCAACTGACAAATTCTTCTTACAAAAGAATGTAGCAAGGAAAAAACGAAAGAATCCGA
 
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JMFS050H09+           AAGAGATAACTTACAGGATGGAAAACGGGGCGTGGAATATAGTAATGAACAATACCATTC
rJMFF028I14-          AAGAGATAACTTACAGGATGGAAAACGGGGCGTGGAATATAGTAATGAACAATACCATTC
JMFN011E05+           AAGAGATAACTTACAGGATGGAAAACGGNGCGTGGAATATAGTAATGAACAATACCATTC
                      ____________________________________________________________
consensus             AAGAGATAACTTACAGGATGGAAAACGGGGCGTGGAATATAGTAATGAACAATACCATTC
 
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JMFS050H09+           AGTACTCTACCATCATTCTCTTTCAAGCTGAAACGCGGTTTAGACTTCAATGGGGCCACT
rJMFF028I14-          AGTACTCTACCATCATTCTCTTTCAAGCTGAAACGCGGTTTAGACTTCAATGGGGCCACT
JMFN011E05+           AGTACTCTACCATCATTCTCTTTCAAGCTGAAACGCGGTTTAGACTTCAATGGGGCCACT
                      ____________________________________________________________
consensus             AGTACTCTACCATCATTCTCTTTCAAGCTGAAACGCGGTTTAGACTTCAATGGGGCCACT
 
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JMFS050H09+           CCCCCGAAGCTCTTCTGTATGTACCTCTTCGGTTTCAGCAGATAGTCCCGGGCTTGTCTA
rJMFF028I14-          CCCCCGAAGCTCTTCTGTATGTACCTCTTCGGTTTCAGCAGATAGTCCCGGGCTTGTCTA
JMFN011E05+           CCCCCGAAGCTCTTCTGTATGTACCTCTTCGGTTTCAGCAGATAGTCCCGGGCTTGTCTA
                      ____________________________________________________________
consensus             CCCCCGAAGCTCTTCTGTATGTACCTCTTCGGTTTCAGCAGATAGTCCCGGGCTTGTCTA
 
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JMFS050H09+           TTATTACACGCAAACCATCTCTACCGCTATGAACCCTACCTACACATCTCGGTTTAGTTG
rJMFF028I14-          TTATTACACGCAAACCATCTCTACCGCTATGAACCCTACCTACACATCTCGGTTTAGTTG
JMFN011E05+           TTATTACACGCAAACCATCTCTACCGCTATGAACCCTACCTACACATCTCGGTTTAGTTG
                      ____________________________________________________________
consensus             TTATTACACGCAAACCATCTCTACCGCTATGAACCCTACCTACACATCTCGGTTTAGTTG
 
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JMFS050H09+           ACCTGT                                                      
rJMFF028I14-          ACCTGTTCACCTATCAAGTCCAGCCCGACGAGAAGGAAGGATATTCCTTGAAACAGCAAG
JMFN011E05+           ACCTGTTCACCTATCAAGTCCAGCCCGACGAGAAGGAAGGATATTCCTTGAAACAGCAAG
                      ____________________________________________________________
consensus             ACCTGTTCACCTATCAAGTCCAGCCCGACGAGAAGGAAGGATATTCCTTGAAACAGCAAG
 
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rJMFF028I14-          AAGTAGAAGTGGATGCCCTGAGCCGAGAGGAGGCTCCTCACTGAAGCTGTCAAAAGAAGG
JMFN011E05+           AAGTAGAAGTGGATGCCCTGAGCCGAGAGGAGGCTCCTCACTGAAGCTGTCAAAAGAAGG
                      ____________________________________________________________
consensus             AAGTAGAAGTGGATGCCCTGAGCCGAGAGGAGGCTCCTCACTGAAGCTGTCAAAAGAAGG
 
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rJMFF028I14-          AAGGCGAGGGCGAGTTCTTTTGTGTATATACGGTTATGCTTCTTCTTCGGGGCAGCTTTC
JMFN011E05+           AAGGCGAGGGCGAGTTCTTTTGTGTATATACGGTTATGCTTCTTCTTCGGGGCAGCTTTC
                      ____________________________________________________________
consensus             AAGGCGAGGGCGAGTTCTTTTGTGTATATACGGTTATGCTTCTTCTTCGGGGCAGCTTTC
 
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rJMFF028I14-          TTTTCCTTCTGTTTAATTTCCTCCCGCAATTCATCCAAATCTGGCACCGATGACGCACCT
JMFN011E05+           TTTTCCTTCTGTTTAATTTCCTCCCGCAATTCATCCAAATCTGGCACCGATGACGCACCT
                      ____________________________________________________________
consensus             TTTTCCTTCTGTTTAATTTCCTCCCGCAATTCATCCAAATCTGGCACCGATGACGCACCT
 
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rJMFF028I14-          CGTTGCTGTTTAGGTTTTTCGTCAACCAAGGAGGCGAGATCGCCCTCGGAAGAGCGGCCG
JMFN011E05+           CGTTGCTGTTTAGGTTTTTCGTCAACCAAGGAGGCGAGATCGCCCTCGGAAGAGCGGCCG
                      ____________________________________________________________
consensus             CGTTGCTGTTTAGGTTTTTCGTCAACCAAGGAGGCGAGATCGCCCTCGGAAGAGCGGCCG
 
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rJMFF028I14-          AGTTTTTTAGTTACAACCC                                         
JMFN011E05+           AGTTTTTTAGTTACAACCCACTCGTATGCACTTCCGAGTTGGAAGAGTCCCGAGATCATG
                      ____________________________________________________________
consensus             AGTTTTTTAGTTACAACCCACTCGTATGCACTTCCGAGTTGGAAGAGTCCCGAGATCATG