| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001J22 | Sequence | 487 | 001815 (6) | ref|XP_009783395.1| | 3e-85 | PREDICTED: SKP1-like protein 1A [Nicotiana sylvestris] | 683 | 001815 (6) | ref|XP_009783395.1| | 3e-88 | PREDICTED: SKP1-like protein 1A [Nicotiana sylvestris] |
| JMFF029L05 | Sequence | 497 | 001815 (6) | ref|XP_009783395.1| | 1e-84 | PREDICTED: SKP1-like protein 1A [Nicotiana sylvestris] | 688 | 001815 (6) | ref|XP_009783395.1| | 7e-88 | PREDICTED: SKP1-like protein 1A [Nicotiana sylvestris] |
| JMFN008J01 | Sequence | 627 | 001815 (6) | ref|XP_009783395.1| | 2e-88 | PREDICTED: SKP1-like protein 1A [Nicotiana sylvestris] | |||||
| JMFN009A14 | Sequence | 682 | 001815 (6) | ref|XP_009783395.1| | 4e-88 | PREDICTED: SKP1-like protein 1A [Nicotiana sylvestris] | |||||
This contig is upended
. : . : . : . : . : . :
JMFN009A14+ AAAATTAAGCANCA
____________________________________________________________
consensus AAAATTAAGCANCA
. : . : . : . : . : . :
JMFN009A14+ AGNAGGTTCTAATCATATTACTGACCATAAACTGAGAAACATAAATAAGATTGATTGGGT
JMFN008J01+ GAGAAACATAAATAAGATTGATTGGGT
____________________________________________________________
consensus AGNAGGTTCTAATCATATTACTGACCATAAACTGAGAAACATAAATAAGATTGATTGGGT
. : . : . : . : . : . :
JMFN009A14+ CACATAGCATGTATGCCCTACGGCGAGTATAGACAATTAATTAGCAGAGAGCATATTTCA
rJMFF001J22- TTCA
rJMFF029L05- TTCA
JMFN008J01+ CACATAGCATGTATGCCCTACGGCGAGTATAGACAATTAATTAGCAGAGAGCATATTTCA
____________________________________________________________
consensus CACATAGCATGTATGCCCTACGGCGAGTATAGACAATTAATTAGCAGAGAGCATATTTCA
. : . : . : . : . : . :
JMFN009A14+ CTCAAATGCCCAGGCATTCTCCCTCCTGACCTCCTCTTCCTCCTCAGGTGTGAAGTCATT
rJMFF001J22- CTCAAATGCCCAGGCATTCTCCCTCCTGACCTCCTCTTCCTCCTCAGGTGTGAAGTCATT
rJMFF029L05- CTCAAATGCCCAGGCATTCTCCCTCCTGACCTCCTCTTCCTCCTCAGGTGTGAAGTCATT
JMFF029L05+ CTCTTCCTCCTCAGGTGTGAAGTCATT
JMFF001J22+ TCCTCAGGTGTGAAGTCATT
JMFN008J01+ CTCAAATGCCCAGGCATTCTCCCTCCTGACCTCCTCTTCCTCCTCAGGTGTGAAGTCATT
____________________________________________________________
consensus CTCAAATGCCCAGGCATTCTCCCTCCTGACCTCCTCTTCCTCCTCAGGTGTGAAGTCATT
. : . : . : . : . : . :
JMFN009A14+ TTTTATGTTGAAAGTTTTCCTGATTTCCTCTGGGGTCTTGCCCTTGATCATGTCAGCCAC
rJMFF001J22- TTTTATGTTGAAAGTTTTCCTGATTTCCTCTGGGGTCTTGCCCTTGATCATGTCAGCCAC
rJMFF029L05- TTTTATGTTGAAAGTTTTCCTGATTTCCTCTGGGGTCTTGCCCTTGATCATGTCAGCCAC
JMFF029L05+ TTTTATGTTGAAAGTTTTCCTGATTTCCTCTGGGGTCTTGCCCTTGATCATGTCAGCCAC
JMFF001J22+ TTTTATGTTGAAAGTTTTCCTGATTTCCTCTGGGGTCTTGCCCTTGATCATGTCAGCCAC
JMFN008J01+ TTTTATGTTGAAAGTTTTCCTGATTTCCTCTGGGGTCTTGCCCTTGATCATGTCAGCCAC
____________________________________________________________
consensus TTTTATGTTGAAAGTTTTCCTGATTTCCTCTGGGGTCTTGCCCTTGATCATGTCAGCCAC
. : . : . : . : . : . :
JMFN009A14+ TGTTTGACATGTGAGATCAAGCAAGCTCTTGATGTTCAGGTAATTAGCAGCCAATATAAG
rJMFF001J22- TGTTTGACATGTGAGATCAAGCAAGCTCTTGATGTTCAGGTAATTAGCAGCCAATATAAG
rJMFF029L05- TGTTTGACATGTGAGATCAAGCAAGCTCTTGATGTTCAGGTAATTAGCAGCCAATATAAG
JMFF029L05+ TGTTTGACATGTGAGATCAAGCAAGCTCTTGATGTTCAGGTAATTAGCAGCCAATATAAG
JMFF001J22+ TGTTTGACATGTGAGATCAAGCAAGCTCTTGATGTTCAGGTAATTAGCAGCCAATATAAG
JMFN008J01+ TGTTTGACATGTGAGATCAAGCAAGCTCTTGATGTTCAGGTAATTAGCAGCCAATATAAG
____________________________________________________________
consensus TGTTTGACATGTGAGATCAAGCAAGCTCTTGATGTTCAGGTAATTAGCAGCCAATATAAG
. : . : . : . : . : . :
JMFN009A14+ ATCAAAGAGAGTGCTCTGATCAACTTTGACAAATTCAGCATCAAAGGCTTTGAGATCGTC
rJMFF001J22- ATCAAAGAGAGTGCTCTGATCAACTTTGACAAATTCAGCATCAAAGGCTTTGAGATCGTC
rJMFF029L05- ATCAAAGAGAGTGCTCTGATCAACTTTGACAAATTCAGCATCAAAGGCTTTGAGATCGTC
JMFF029L05+ ATCAAAGAGAGTGCTCTGATCAACTTTGACAAATTCAGCATCAAAGGCTTTGAGATCGTC
JMFF001J22+ ATCAAAGAGAGTGCTCTGATCAACTTTGACAAATTCAGCATCAAAGGCTTTGAGATCGTC
JMFN008J01+ ATCAAAGAGAGTGCTCTGATCAACTTTGACAAATTCAGCATCAAAGGCTTTGAGATCGTC
____________________________________________________________
consensus ATCAAAGAGAGTGCTCTGATCAACTTTGACAAATTCAGCATCAAAGGCTTTGAGATCGTC
. : . : . : . : . : . :
JMFN009A14+ CTCGTTCGCCTTGTCATCGCTCTTCGCAGGATCGACATGGCGCCTACAGTATTCTATAAC
rJMFF001J22- CTCGTTCGCCTTGTCATCGCTCTTCGCAGGATCGACATGGCGCCTACAGTATTCTATAAC
rJMFF029L05- CTCGTTCGCCTTGTCATCGCTCTTCGCAGGATCGACATGGCGCCTACAGTATTCTATAAC
JMFF029L05+ CTCGTTCGCCTTGTCATCGCTCTTCGCAGGATCGACATGGCGCCTACAGTATTCTATAAC
JMFF001J22+ CTCGTTCGCCTTGTCATCGCTCTTCGCAGGATCGACATGGCGCCTACAGTATTCTATAAC
JMFN008J01+ CTCGTTCGCCTTGTCATCGCTCTTCGCAGGATCGACATGGCGCCTACAGTATTCTATAAC
____________________________________________________________
consensus CTCGTTCGCCTTGTCATCGCTCTTCGCAGGATCGACATGGCGCCTACAGTATTCTATAAC
. : . : . : . : . : . :
JMFN009A14+ CTTAGCCAATATCTTGCTAGTGACGTTGGGAAGCGGTATAACAGTATCTGCGCAATCGTC
rJMFF001J22- CTTAGCCAATATCTTGCTAGTGACGTTGGGAAGCGGTATAACAGTATCTGCGCAATCGTC
rJMFF029L05- CTTAGCCAATATCTTGCTAGTGACGTTGGGAAGCGGTATAACAGTATCTGCGCAATCGTC
JMFF029L05+ CTTAGCCAATATCTTGCTAGTGACGTTGGGAAGCGGTATAACAGTATCTGCGCAATCGTC
JMFF001J22+ CTTAGCCAATATCTTGCTAGTGACGTTGGGAAGCGGTATAACAGTATCTGCGCAATCGTC
JMFN008J01+ CTTAGCCAATATCTTGCTAGTGACGTTGGGAAGCGGTATAACAGTATCTGCGCAATCGTC
____________________________________________________________
consensus CTTAGCCAATATCTTGCTAGTGACGTTGGGAAGCGGTATAACAGTATCTGCGCAATCGTC
. : . : . : . : . : . :
JMFN009A14+ TTCAATCATGTGCTTAATCGTCTGGGACTCGAGAGCAACCGCCTCCATGACCTCGAAGGT
rJMFF001J22- TTCAATCATGTGCTTAATCGTCTGGGACTCGAGAGCAACCGCCTCCATGACCTCGAAGGT
rJMFF029L05- TTCAATCATGTGCTTAATCGTCTGGGACTCGAGAGCAACCGCCTCCATGACCTCGAAGGT
JMFF029L05+ TTCAATCATGTGCTTAATCGTCTGGGACTCGAGAGCAACCGCCTCCATGACCTCGAAGGT
JMFF001J22+ TTCAATCATGTGCTTAATCGTCTGGGACTCGAGAGCAACCGCCTCCATGACCTCGAAGGT
JMFN008J01+ TTCAATCATGTGCTTAATCGTCTGGGACTCGAGAGCAACCGCCTCCATGACCTCGAAGGT
____________________________________________________________
consensus TTCAATCATGTGCTTAATCGTCTGGGACTCGAGAGCAACCGCCTCCATGACCTCGAAGGT
. : . : . : . : . : . :
JMFN009A14+ CTCGCCGTCAGCACTTTTCAACAATATCATCTTTGGGGAAGACATC
rJMFF001J22- CTCGCCGTCAGCACTTTTCAACAATATCATCTTTGGGGAAGACATCGTCGCCGCTGAGAA
rJMFF029L05- CTCGCCGTCAGCACCTTTCAACAATATCATCTTTGGGGAAGACATCGTCGCCGCTGAGAA
JMFF029L05+ CTCGCCGTCAGCACCTTTCAACAATATCATCTTTGGGGAAGACATCGTCGCCGCTGAGAA
JMFF001J22+ CTCGCCGTCAGCACTTTTCAACAATATCATCTTTGGGGAAGACATCGTCGCCGCTGAGAA
JMFN008J01+ CTCGCCGTCAGCACTTTTCAACAATATCATCTTTGGGGAAGACATCGTCGCCGCTGAGAA
____________________________________________________________
consensus CTCGCCGTCAGCACTTTTCAACAATATCATCTTTGGGGAAGACATCGTCGCCGCTGAGAA
. : . : . : . : . : . :
rJMFF001J22- TCTGTAAACGAACCCTAAGGGAGAGATATTGTAGAGAGAGAAACGGC
rJMFF029L05- TCTGT-AACGAACCCTAAGGGAGAGATATTGTAGAGAGAGAAACGGCAAT
JMFF029L05+ TCTGT-AACGAACCCTAAGGGAGAGATATTGTAGAGAGAGAAACGGCAAT
JMFF001J22+ TCTGTAAACGAACCCTAAGGGAGAGATATTGTAGAGAGAGAAACGGC
JMFN008J01+ TCTGTAAACGAACCCTAAGGGAGAGATATTGTAGAGAGAGAAACGGCAATGTAGAGAGAG
____________________________________________________________
consensus TCTGTAAACGAACCCTAAGGGAGAGATATTGTAGAGAGAGAAACGGCAATGTAGAGAGAG