Contig 001813:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF039E13Sequence165001813 (5)ref|XP_009800223.1|6e-25PREDICTED: lipoxygenase homology domain-containing protein 1-like [Nicotiana sy
JMFN006I16Sequence367001813 (5)ref|XP_009800223.1|1e-67PREDICTED: lipoxygenase homology domain-containing protein 1-like [Nicotiana sy
JMFN028G02Sequence205001813 (5)ref|XP_011090524.1|1e-30PREDICTED: lipoxygenase homology domain-containing protein 1-like [Sesamum indi
JMFN035A01Sequence335001813 (5)ref|XP_006367111.1|6e-24PREDICTED: lipoxygenase homology domain-containing protein 1-like [Solanum tube
JMFN035A07Sequence335001813 (5)ref|XP_006367111.1|4e-21PREDICTED: lipoxygenase homology domain-containing protein 1-like [Solanum tube

Alignment

This contig is upended


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JMFN035A01-                                                                     GA
JMFN035A07-                                                                     GA
                      ____________________________________________________________
consensus                                                                       GA
 
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JMFN035A01-           CACCAAAAAAACAAAATTCATTATTTCAAAAGTACGAAGAGGGCCGAATATGAGAACTCG
JMFN035A07-           CACCAAAAAAACAAAATTCATTATTTCAAAAGTACGAAGAGGGCCGAATATGAGAACTCG
                      ____________________________________________________________
consensus             CACCAAAAAAACAAAATTCATTATTTCAAAAGTACGAAGAGGGCCGAATATGAGAACTCG
 
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JMFN035A01-           GGCCCAAGTCCGGAACAGCCCATGTGACATTGATACAAAAGTCCAACACCACTCTCTCAC
JMFN035A07-           GGCCCAAGTCCGGAACAGCCCATGTGACATTGATACAAAAGTCCAACACCACTCTCTCAC
                      ____________________________________________________________
consensus             GGCCCAAGTCCGGAACAGCCCATGTGACATTGATACAAAAGTCCAACACCACTCTCTCAC
 
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JMFN035A01-           ATGACAGCTACAATTCCAGCAGTTTCAGAGGCGCCGACGGGAAGAGACTTAGCGGCATCA
JMFN035A07-           ATGACAGCTACAATTCCAGCAGTTTCAAAGGCGCCGACGGGAAGAGACTTAGCGGCATCA
                      ____________________________________________________________
consensus             ATGACAGCTACAATTCCAGCAGTTTCAGAGGCGCCGACGGGAAGAGACTTAGCGGCATCA
 
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JMFN035A01-           GATTCACAAATGTTTCTGATGGCGGTGAGCTCATACGGCGACGTATCGGTGGACAACCAC
JMFN035A07-           GATTCACAAATGTTTCTGATGGCGGTGAGCTCATACGGCGACGTATCGGTGGACAACCAC
JMFN006I16+                                                                CAACCAC
                      ____________________________________________________________
consensus             GATTCACAAATGTTTCTGATGGCGGTGAGCTCATACGGCGACGTATCGGTGGACAACCAC
 
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JMFN035A01-           TGCTCCACCGTGAATAGCTGTTGGTAGCACGCCTGGTGGACTCCGGTGACGGTGACCTCC
JMFN035A07-           TGCTCCACCGAGAATAACTGTTGGTAGCACGCCTGGAGGACTCCGGTGACGGTGACCTCC
JMFN006I16+           TGCTCCACCGTGAATAGCTGTTGGTAGCACGCCTGGTGGACTCCGGTGACGGTGACCTCC
                      ____________________________________________________________
consensus             TGCTCCACCGTGAATAGCTGTTGGTAGCACGCCTGGTGGACTCCGGTGACGGTGACCTCC
 
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JMFN035A01-           ACGTAGTTACAGTACCAGCCGTGGTGCGGGCCG                           
JMFN035A07-           ACGTAGTTACAGTACCAGCCGTGGTGCGGGCCG                           
JMFN006I16+           ACGTAGTTACAGTACCAGCCGTGGTGCGGGCCGGTGCCGTCGGAGGTGAGGTTCATGTAG
                      ____________________________________________________________
consensus             ACGTAGTTACAGTACCAGCCGTGGTGCGGGCCGGTGCCGTCGGAGGTGAGGTTCATGTAG
 
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JMFN028G02+                                  CCCGCGCCCGCTGAAGATGTCCAGGTTCCCCCTCTCG
JMFF039E13+                                                    GTCCAGGTTCCCCCTCTCG
JMFN006I16+           CAGACCCGCCGAGACAGGCACGGCCCGCGCCCGCTGAAGATGTCCAGGTTCCCCCTCTCG
                      ____________________________________________________________
consensus             CAGACCCGCCGAGACAGGCACGGCCCGCGCCCGCTGAAGATGTCCAGGTTCCCCCTCTCG
 
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JMFN028G02+           AAATAGTTGTATCCCGGGCCCATAAGCCCGCCCCAAGTCTCCAGGTTGTTGATCCTGATA
JMFF039E13+           AAATAGTTGTATCCCGGGCCCATAAGCCCGCCCCAAGTCTCCAGGTTGTTGATCCTGATA
JMFN006I16+           AAATAGTTGTATCCCGGGCCCATAAGCCCGCCCCAAGTCTCCAGGTTGTTGATCCTGATA
                      ____________________________________________________________
consensus             AAATAGTTGTATCCCGGGCCCATAAGCCCGCCCCAAGTCTCCAGGTTGTTGATCCTGATA
 
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JMFN028G02+           CCATACCCATCGGCGTCGAACAGAGTCAATGTAATGTTCGAATCTGTCCCCGCTTTCACG
JMFF039E13+           CCATACCCATCGGCGTCGAACAGAGTCAATGTAATGTTCGAATCTGTCCCCGCTTTCACG
JMFN006I16+           CCATACCCATCGGCGTCGAACAGAGTCAATGTAATGTTCGAATCTGTCCCCGCTTTCACG
                      ____________________________________________________________
consensus             CCATACCCATCGGCGTCGAACAGAGTCAATGTAATGTTCGAATCTGTCCCCGCTTTCACG
 
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JMFN028G02+           ATCGATCCAGTTCTCACAAAAACCGTG                                 
JMFF039E13+           ATCGATCCAGTTCTCACAA                                         
JMFN006I16+           ATCGATCCAGTTCTCACAAAAACCGTGTACACACAATCCGGTGGAGATCCAAGAATGGAA
                      ____________________________________________________________
consensus             ATCGATCCAGTTCTCACAAAAACCGTGTACACACAATCCGGTGGAGATCCAAGAATGGAA