Contig 001800:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF050M23Sequence606001800 (2)dbj|BAE92960.1|1e-359-cis-epoxycarotenoid-dioxygenase [Citrus unshiu]338022411
JMFS015C01Sequence592001800 (2)dbj|BAE92960.1|1e-379-cis-epoxycarotenoid-dioxygenase [Citrus unshiu]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS015C01+ GTGGTGACCGGC
JMFF050M23+ ACCGGC
                      ____________________________________________________________
consensus GTGGTGACCGGC
 
. : . : . : . : . : . :
JMFS015C01+ AACCGGCTCGAAGAGCGGGTTAGCGCCGTTTCTTACGTAAATGCCGTTAATGCATTCCGG
JMFF050M23+ AACCGGCTCGAAGAGCGGGTTAGCGCCGTTTCTTACGTAAATGCCGTTAATGCATTCCGG
                      ____________________________________________________________
consensus AACCGGCTCGAAGAGCGGGTTAGCGCCGTTTCTTACGTAAATGCCGTTAATGCATTCCGG
 
. : . : . : . : . : . :
JMFS015C01+ CACGGCGCCGACCACCGGGAGGTTATGCCGCACCGCCTGCTCCGGCACGGGGGCGAAGTT
JMFF050M23+ CACGGCGCCGACCACCGGGAGGTTATGCCGCACCGCCTGCTCCGGCACGGGGGCGAAGTT
                      ____________________________________________________________
consensus CACGGCGCCGACCACCGGGAGGTTATGCCGCACCGCCTGCTCCGGCACGGGGGCGAAGTT
 
. : . : . : . : . : . :
JMFS015C01+ CCCAGATATTTGGACGCCCGGATCAGCCGTCTTGGGGAGCGGGTGTTTCCTCTCCACCGC
JMFF050M23+ CCCAGATATTTGGACGCCCGGATCAGCCGTCTTGGGGAGCGGGTGTTTCCTCTCCACCGC
                      ____________________________________________________________
consensus CCCAGATATTTGGACGCCCGGATCAGCCGTCTTGGGGAGCGGGTGTTTCCTCTCCACCGC
 
. : . : . : . : . : . :
JMFS015C01+ CACCAACGCGCTCTCCACCGCGTTCAGCGCCGCCGAGGCCGCCCTCTGAAACACGTTCCA
JMFF050M23+ CACCAACGCGCTCTCCACCGCGTTCAGCGCCGCCGAGGCCGCCCTCTGAAACACGTTCCA
                      ____________________________________________________________
consensus CACCAACGCGCTCTCCACCGCGTTCAGCGCCGCCGAGGCCGCCCTCTGAAACACGTTCCA
 
. : . : . : . : . : . :
JMFS015C01+ GTGCGGCGGCGGCGCCGCCGCCTGAGAAGTATCCGGCGGCGCCGGTGCCGGCGCCGGAGA
JMFF050M23+ GTGCGGCGGCGGCGCCGCCGCCTGAGAAGTATCCGGCGGCGCCGGTGCCGGCGCCGGAGA
                      ____________________________________________________________
consensus GTGCGGCGGCGGCGCCGCCGCCTGAGAAGTATCCGGCGGCGCCGGTGCCGGCGCCGGAGA
 
. : . : . : . : . : . :
JMFS015C01+ TTCCTTCTGGAAAGGATTCTTAGGGAAAGTGAGGACTGATGGGGAGTGGATTACTGCGCC
JMFF050M23+ TTCCTTCTGGAAAGGATTCTTAGGGAAAGTGAGGACTGATGGGGAGTGGATTACTGCGCC
                      ____________________________________________________________
consensus TTCCTTCTGGAAAGGATTCTTAGGGAAAGTGAGGACTGATGGGGAGTGGATTACTGCGCC
 
. : . : . : . : . : . :
JMFS015C01+ ACACCGAATTTGAGCTCTCCTATTAGCCATGGAAACGGACTTTGAAGTGAAACCCAAATC
JMFF050M23+ ACACCGAATTTGAGCTCTCCTATTAGCCATGGAAACGGACTTTGAAGTGAAACCCAAATC
                      ____________________________________________________________
consensus ACACCGAATTTGAGCTCTCCTATTAGCCATGGAAACGGACTTTGAAGTGAAACCCAAATC
 
. : . : . : . : . : . :
JMFS015C01+ CACTTTTAAAGAAGGAGAAGAAGAAGAAAATGGCGAAGAGATTTGGATTCTACTAGCAGC
JMFF050M23+ CACTTTTAAAGAAGGAGAAGAAGAAGAAAATGGCGAAGAGATTTGGATTCTACTAGCAGC
                      ____________________________________________________________
consensus CACTTTTAAAGAAGGAGAAGAAGAAGAAAATGGCGAAGAGATTTGGATTCTACTAGCAGC
 
. : . : . : . : . : . :
JMFS015C01+ CATTATATTCTTTGTTGTTTTAAGGAGAAAAAGTTGGCAATTTTATTGTGAATTTGAGTA
JMFF050M23+ CATTATATTCTTTGTTGTTTTAAGGAGAAAAAGTTGGCAATTTTATTGTGAATTTGAGTA
                      ____________________________________________________________
consensus CATTATATTCTTTGTTGTTTTAAGGAGAAAAAGTTGGCAATTTTATTGTGAATTTGAGTA
 
. : . : . : . : . : . :
JMFS015C01+ AACCTCGTAGTGAAGGGAGAGAAGAGAAGAGAAGAGAAGA
JMFF050M23+ AACCTCGTAGTGAAGGGAGAGAAGAGAAGAGAAGAGAAGAGGAAGGGAAGGGTTGTTTTC
                      ____________________________________________________________
consensus AACCTCGTAGTGAAGGGAGAGAAGAGAAGAGAAGAGAAGAGGAAGGGAAGGGTTGTTTTC