Contig 001795:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005I16Sequence467019490ref|XP_006349773.1|3e-31PREDICTED: SNF1-related protein kinase regulatory subunit beta-1-like [Solanum 615001795 (3)ref|XP_009789055.1|2e-36PREDICTED: SNF1-related protein kinase regulatory subunit beta-1 [Nicotiana syl
JMFF049H01Sequence634001795 (3)ref|XP_009782644.1|1e-68PREDICTED: calmodulin-7-like isoform X1 [Nicotiana sylvestris]640001795 (3)ref|XP_009782644.1|2e-53PREDICTED: calmodulin-7-like isoform X1 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMFF005I16+                                                          ATTGCCAAGCAT
                      ____________________________________________________________
consensus                                                             ATTGCCAAGCAT
 
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rJMFF005I16+          TTCCAGGAGATGAAGATTTTGCAAAGGATCCACCAGCAGTTCCACCTCAACTCCATCTAA
                      ____________________________________________________________
consensus             TTCCAGGAGATGAAGATTTTGCAAAGGATCCACCAGCAGTTCCACCTCAACTCCATCTAA
 
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rJMFF005I16+          CTGTTCTTGATTCAGAAAAATCAGACGAAGAAGATGCTTCTTGTAAGCCCCAGCATGTGG
                      ____________________________________________________________
consensus             CTGTTCTTGATTCAGAAAAATCAGACGAAGAAGATGCTTCTTGTAAGCCCCAGCATGTGG
 
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rJMFF005I16+          TGCTTAACCACGTTTTCATAGAGAAAGAATGGGCATCGCAATCCGTTGTTGCTCTTGGCC
                      ____________________________________________________________
consensus             TGCTTAACCACGTTTTCATAGAGAAAGAATGGGCATCGCAATCCGTTGTTGCTCTTGGCC
 
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rJMFF005I16+          TGACCCAAAGGTTCCAGTCCAAATATGTTACTGTCGTCCTCTATAAGCCACTAAAGAGGT
                      ____________________________________________________________
consensus             TGACCCAAAGGTTCCAGTCCAAATATGTTACTGTCGTCCTCTATAAGCCACTAAAGAGGT
 
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rJMFF005I16+          GACACCACTTGTTAAACATCCCGAGCATTGTGGAGATTCCCCCATGTGTTCATTTCGGAC
                      ____________________________________________________________
consensus             GACACCACTTGTTAAACATCCCGAGCATTGTGGAGATTCCCCCATGTGTTCATTTCGGAC
 
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rJMFF005I16+          AACTCTTTCAGGTTTTTAACTTCCAACTAATGCCTTCTCTGTACATCTNTGATCTCATGC
                      ____________________________________________________________
consensus             AACTCTTTCAGGTTTTTAACTTCCAACTAATGCCTTCTCTGTACATCTNTGATCTCATGC
 
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rJMFF005I16+          ATTTAGTTTTCACCCCTCTTGAACGAACTGCCGAATGAATTTTAAACTGTACAAATGAAA
                      ____________________________________________________________
consensus             ATTTAGTTTTCACCCCTCTTGAACGAACTGCCGAATGAATTTTAAACTGTACAAATGAAA
 
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rJMFF005I16+          ATCTTTAGGATTCTCTGTTGCACTATTACTATCCTATCCCTTGTCATCTGTTGCATGATT
                      ____________________________________________________________
consensus             ATCTTTAGGATTCTCTGTTGCACTATTACTATCCTATCCCTTGTCATCTGTTGCATGATT
 
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rJMFF005I16+          TTGTGGTCTGTTTCAATTCTCATGGCTTTTGCGGTGTGCATTCAATGGAGTATGAAATCC
rJMFF049H01-                                                 ATTCAATGGAGTATGAAATCC
                      ____________________________________________________________
consensus             TTGTGGTCTGTTTCAATTCTCATGGCTTTTGCGGTGTGCATTCAATGGAGTATGAAATCC
 
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rJMFF005I16+          ATTTATATTATAATGTATGTATACATCATAACATTATTTGAGACGTAGCACATGTTACAG
rJMFF049H01-          ATTTATATTATAATGTATGTATACATCATAACATTATTTGAGACGTAGCACATGTTACAG
                      ____________________________________________________________
consensus             ATTTATATTATAATGTATGTATACATCATAACATTATTTGAGACGTAGCACATGTTACAG
 
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rJMFF005I16+          ACT                                                         
rJMFF049H01-          ACTTTTCAAGCCTTGAACATAAAGTGAAAATATGCAATGAAAATTACAGAATTGTACACT
JMFF049H01+                                     AAAATATGCAATGAAAATTACAGAATNGTACACT
                      ____________________________________________________________
consensus             ACTTTTCAAGCCTTGAACATAAAGTGAAAATATGCAATGAAAATTACAGAATTGTACACT
 
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rJMFF049H01-          CACGAACACGTTCCCATTTGCGAGTTTTCTTGCCATTGCCATTGCCATTTCCTTTGTAGC
JMFF049H01+           CACGAACACGTTCCCATTTGCGAGTTTTCTTGCCATTGCCATTGCCATTTCCTTNGTAGC
                      ____________________________________________________________
consensus             CACGAACACGTTCCCATTTGCGAGTTTTCTTGCCATTGCCATTGCCATTTCCTTTGTAGC
 
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rJMFF049H01-          TGTGGTCTTTACTTTCCACACCCCCCAGTCGCCTTTTGGACATCATGACCTTGACAAACT
JMFF049H01+           TGTGGTCTTTACTTTCCACACCCCCCAGTCGCCTTTTGGACATCATGACCTTGACAAACT
                      ____________________________________________________________
consensus             TGTGGTCTTTACTTTCCACACCCCCCAGTCGCCTTTTGGACATCATGACCTTGACAAACT
 
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rJMFF049H01-          CGTGGTAATCGATCTGGCCATCGTTGTCAACATCGGCCTCCTTAATCATCTCCTCCACCT
JMFF049H01+           CGTGGTAATCGATCTGGCCATCGTTGTCAACATCGGCCTCCTTAATCATCTCCTCCACCT
                      ____________________________________________________________
consensus             CGTGGTAATCGATCTGGCCATCGTTGTCAACATCGGCCTCCTTAATCATCTCCTCCACCT
 
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rJMFF049H01-          CTTTATCACTCAATCTCTGCCCGAGATTCTTCATCACCTGCCGGAGTTCGTCGGGGGAGA
JMFF049H01+           CTTTATCACTCAATCTCTGCCCGAGATTCTTCATCACCTGCCGGAGTTCGTCGGGGGAGA
                      ____________________________________________________________
consensus             CTTTATCACTCAATCTCTGCCCGAGATTCTTCATCACCTGCCGGAGTTCGTCGGGGGAGA
 
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rJMFF049H01-          TGACGCCGTTGTGGTCCTTATCGAAGATCCGGAACGCCGCCTTGAATTCCTCCTCCGCCT
JMFF049H01+           TGACGCCGTTGTGGTCCTTATCGAAGATCCGGAACGCCGCCTTGAATTCCTCCTCCGCCT
                      ____________________________________________________________
consensus             TGACGCCGTTGTGGTCCTTATCGAAGATCCGGAACGCCGCCTTGAATTCCTCCTCCGCCT
 
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rJMFF049H01-          CGTTATCCTTCAGCTTCTTCGACATTAGCCCAAGAAACTCATTGAAGTCTACTGTCCCAC
JMFF049H01+           CGTTATCCTTCAGCTTCTTCGACATTAGCCCAAGAAACTCATTGAAGTCTACTGTCCCAC
                      ____________________________________________________________
consensus             CGTTATCCTTCAGCTTCTTCGACATTAGCCCAAGAAACTCATTGAAGTCTACTGTCCCAC
 
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rJMFF049H01-          TCCCATCATCGTCCACTCCTCTGATCATTTCTTTCAGCTCTGCTTCCGTCACTACTTGCC
JMFF049H01+           TCCCATCATCGTCCACTCCTCTGATCATTTCTTTCAGCTCTGCTTCCGTCACTACTTGCC
                      ____________________________________________________________
consensus             TCCCATCATCGTCCACTCCTCTGATCATTTCTTTCAGCTCTGCTTCCGTCACTACTTGCC
 
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rJMFF049H01-          CCAATGATCTTAGCACTATTCCAAGCTCTTGGCAAGTCACTTGCCCATCT          
JMFF049H01+           CCAATGATCTTAGCACTATTCCAAGCTCTTGGCAAGTCACTTGCCCATCTCCATCTTTGT
                      ____________________________________________________________
consensus             CCAATGATCTTAGCACTATTCCAAGCTCTTGGCAAGTCACTTGCCCATCTCCATCTTTGT
 
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JMFF049H01+           CAAAGAGGCTGAAGGCTTCTCTGTACTCAGCTATCTGATCTGCAGTGAGGTGGCTCGCCG
                      ____________________________________________________________
consensus             CAAAGAGGCTGAAGGCTTCTCTGTACTCAGCTATCTGATCTGCAGTGAGGTGGCTCGCCG
 
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JMFF049H01+           CCATTGTGGAGAGAAGAGAGAGAGAGAGGGGGTTTAATTTGTGGTAATTACAAACCTTTT
                      ____________________________________________________________
consensus             CCATTGTGGAGAGAAGAGAGAGAGAGAGGGGGTTTAATTTGTGGTAATTACAAACCTTTT