Contig 001792:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015E16Sequence617001792 (2)ref|XP_006343941.1|1e-36PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM717001230 (2)ref|XP_010259181.1|1e-70PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM
JMFF049A14Sequence641001792 (2)ref|XP_006343941.1|6e-43PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM156001230 (2)

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF015E16+                                                      GGATATTATATGTGGGA
JMFF049A14+                              CTGTAAATGTCACAGGCTTCTCCGGGATATTATATGTGGGA
                      ____________________________________________________________
consensus                                CTGTAAATGTCACAGGCTTCTCCGGGATATTATATGTGGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF015E16+           GCATCAAAGGGATCATCAACGGTAGATACCTCTTTTCGGCCCTCTGATCGCTTTTGTCCA
JMFF049A14+           GCATCAAAGGGATCATCAACGGTAGATACCTCTTTTCGGCCCTCTGATCGCTTTTGTCCA
                      ____________________________________________________________
consensus             GCATCAAAGGGATCATCAACGGTAGATACCTCTTTTCGGCCCTCTGATCGCTTTTGTCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF015E16+           GTTGATTCAGAAGCCTTTGATGCAAATGTTCTAGCAAAGCAAGGCATCTTGAATTTTATA
JMFF049A14+           GTTGATTCAGAAGCCTTTGATGCAAATGTTCTAGCAAAGCAAGGCATCTTGAATTTTATA
                      ____________________________________________________________
consensus             GTTGATTCAGAAGCCTTTGATGCAAATGTTCTAGCAAAGCAAGGCATCTTGAATTTTATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF015E16+           CCATTGATATTGGCAACCTGAAATGGTGCCTGAAAAGTCGTTACGTGTTTCATATTTGGA
JMFF049A14+           CCATTGATATTGGCAACCTGAAATGGTGCCTGAAAAGTCGTTACGTGTTTCATATTTGGA
                      ____________________________________________________________
consensus             CCATTGATATTGGCAACCTGAAATGGTGCCTGAAAAGTCGTTACGTGTTTCATATTTGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF015E16+           CGGTCTCTGAATAGTAAAGGAAGTCCATCACCTTTGTTCATAACCCTAGCTATGGGATTA
JMFF049A14+           CGGTCTCTGAATAGTAAAGGAAGTCCATCACCTTTGTTCATAACCCTAGCTATGGGATTA
                      ____________________________________________________________
consensus             CGGTCTCTGAATAGTAAAGGAAGTCCATCACCTTTGTTCATAACCCTAGCTATGGGATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF015E16+           GCAAGGATAGAAGATTTGCTTGCATAAGCTGATTCTGCTAATTCCCTCCTTACAAAAGGA
JMFF049A14+           GCAAGGATAGAAGATTTGCTTGCATAAGCTGATTCTGCTAATTCCCTCCTTACAAAAGGA
                      ____________________________________________________________
consensus             GCAAGGATAGAAGATTTGCTTGCATAAGCTGATTCTGCTAATTCCCTCCTTACAAAAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF015E16+           TTCGCGGCAGCATTTTCCGATACCAGAGAAGAAAACCCACAAATACCCACATCAGAAACA
JMFF049A14+           TTCGCGGCAGCATTTTCCGATACCAGAGAAGAAAACCCACAAATACCCACATCAGAAACA
                      ____________________________________________________________
consensus             TTCGCGGCAGCATTTTCCGATACCAGAGAAGAAAACCCACAAATACCCACATCAGAAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF015E16+           CTCTTGGTAGGCGCGTTCTCGAAGAAAGCATTCGAGTTATTGTGTGATTTTAAGGCACAT
JMFF049A14+           CTCTTGGTAGGCGCGTTCTCGAAGAAAGCATTCGAGTTATTGTGTGATTTTAAGGCACAT
                      ____________________________________________________________
consensus             CTCTTGGTAGGCGCGTTCTCGAAGAAAGCATTCGAGTTATTGTGTGATTTTAAGGCACAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF015E16+           ATGAATCTGTTAATAGATAACCTGCTTCTCCGTACACTTTGCAGCATCTTCCCACCCGCA
JMFF049A14+           ATGAATCTGTTAATAGATAACCTGCTTCTCCGTACACTTTGCAGCATCTTCCCACCCGCA
                      ____________________________________________________________
consensus             ATGAATCTGTTAATAGATAACCTGCTTCTCCGTACACTTTGCAGCATCTTCCCACCCGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF015E16+           CTGTGCACTTTGCTGAGATTTTTGATCTTGATCGAGCCAGTCAAAATCACAAGAGCTGAT
JMFF049A14+           CTGTGCACTTTGCTGAGATTTTTGATCTTGATCGAGCCAGTCAAAATCACAAGAGCTGAT
                      ____________________________________________________________
consensus             CTGTGCACTTTGCTGAGATTTTTGATCTTGATCGAGCCAGTCAAAATCACAAGAGCTGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF015E16+           TAAGAGCAAAAAAGATCGAATCCTTGAAGACGCTATTAAGCTAATTTTTCTCAGAAGAAC
JMFF049A14+           TAAGAGCAAAAAAGATCGAATCCTTGAAGACGCTATTAAGCTAATTTTTCTCAGAAGAAC
                      ____________________________________________________________
consensus             TAAGAGCAAAAAAGATCGAATCCTTGAAGACGCTATTAAGCTAATTTTTCTCAGAAGAAC