Contig 001778:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF046O19Sequence623001778 (4)ref|XP_009624361.1|3e-49PREDICTED: SKP1-like protein 1A isoform X1 [Nicotiana tomentosiformis]578001778 (4)ref|XP_009620406.1|4e-54PREDICTED: SKP1-like protein 1A [Nicotiana tomentosiformis]
JMFN015I19Sequence627001778 (4)gb|ABB77426.1|1e-50Skp1-like protein 1 [Petunia integrifolia subsp. inflata] gb|ACA61786.1| SKP1-li
JMFN025A13Sequence544001778 (4)ref|XP_009624361.1|3e-57PREDICTED: SKP1-like protein 1A isoform X1 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMFF046O19-                                                              AAGAAAAG
                      ____________________________________________________________
consensus                                                                 AAGAAAAG
 
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rJMFF046O19-          GGTATCACATACATTATATTATTATGATAACAAAGAGGATTTATTAGTAGGATACATGCA
                      ____________________________________________________________
consensus             GGTATCACATACATTATATTATTATGATAACAAAGAGGATTTATTAGTAGGATACATGCA
 
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JMFN025A13+                                                             TTCACTCATA
rJMFF046O19-          TAGCAAACCACCATTAAAGCAAGCAAACAGGCAATTAACAGAATTGAAATTTTACTCAAA
JMFN015I19+                                                             TTCACTCAAA
                      ____________________________________________________________
consensus             TAGCAAACCACCATTAAAGCAAGCAAACAGGCAATTAACAGAATTGAAATTTCACTCAAA
 
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JMFN025A13+           TGCCCAAGCATTCTCCCTACGGAT---CTCTTCTTCTTCCTCTGGTGTGAAGGCAGTTTG
rJMFF046O19-          TGCCCAAGCATTCTCCCTAGGGATCTCCTCTTCTTCTTCCTCTGGTGTGAAGGCAGTTTG
JMFN015I19+           TCCCTAAGCATTTTCCCTACGGA---CCTCTTCTTCTTCCTCTGGTATGAAGGCATTTTG
JMFF046O19+                                     CCTCTTCTTCTTCCTCTGGTGTGAAGGCAGTTTG
                      ____________________________________________________________
consensus             TGCCCAAGCATTCTCCCTACGGAT--CCTCTTCTTCTTCCTCTGGTGTGAAGGCAGTTTG
 
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JMFN025A13+           GATATTGAAAATTTTGCTGATCTCCTCTGGTGTCTTCCCCTTGATCATATCAGCAACAGT
rJMFF046O19-          GATATTGAGAACTTTGCTCATCTCCTCTGGTGTCTTCCCCGTGATCATATCAGCAATAGT
JMFN015I19+           GAGTTTGAAAAATTTGCGGATCTCCTCTGGTGTCTTCCCCTTGATCATATCAGCAACAAT
JMFF046O19+           GATATTGAGAACTTTGCTCATCTCCTCTGGTGTCTTCCCCGTGATCATATCAGCAATAGT
                      ____________________________________________________________
consensus             GATATTGAGAACTTTGCTCATCTCCTCTGGTGTCTTCCCCGTGATCATATCAGCAATAGT
 
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JMFN025A13+           TTGACAGGTAAGATCAAGCAAACTATTGATGTTGAGGAAATTAGCAGCTAGAACAAGATC
rJMFF046O19-          TTGACAGATAAGATCAAGCAAGCTATTGATGTTGAGGAAATTAGCAGCCTCGACGAGATC
JMFN015I19+           TAGACAGGTAAGATCGAGCAAGCTCTTGATGTTGAGGAAATTAGCAGCCAGGATGAGATC
JMFF046O19+           TTGACAGATAAGATCAAGCAAGCTATTGATGTTGAGGAAATTAGCAGCCTCGACGAGATC
                      ____________________________________________________________
consensus             TTGACAGATAAGATCAAGCAAGCTATTGATGTTGAGGAAATTAGCAGCCTCGACGAGATC
 
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JMFN025A13+           AAACAACGTTTTGTGGTCAACTTTGATGAAATTAGCATCGAAGGCCTTGAGATCGTCGGA
rJMFF046O19-          AAACAAAATTGTTTGGTCAACTTCGACGAAATTAGCATCGAAGGCCTTGAGATTGTCGGA
JMFN015I19+           AAACAGCGTTTCCTGGTCAACTTTGAAGAAATCAGCATCGAAGGCCTTGAGATCGTCGGA
JMFF046O19+           AAACAAAATTGTTTGGTCAACTTCGACGAAATTAGCATCGAAGGCCTTGAGATTGTCGGA
                      ____________________________________________________________
consensus             AAACAAAATTGTTTGGTCAACTTCGACGAAATTAGCATCGAAGGCCTTGAGATTGTCGGA
 
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JMFN025A13+           ATCAATGGTCCCCTT---CGCGGCCTCAACGTGGCATTTGCAGTAGTCTATAACCATGCC
rJMFF046O19-          ATCAATGGTCCCCTT---GGCGGCCTCGGCGTGGCATTTGCAGTAGTCTATAACCATGTC
JMFN015I19+           ATCAATGGTCCCCTTCGCGGCGGCCTCGACGTGGCGTTTGCAGTACTCTATAACCATGCC
JMFF046O19+           ATCAATGGTCCCCTT---GGCGGCCTCGGCGTGGCATTTGCAGTAGTCTATAACCATGTC
                      ____________________________________________________________
consensus             ATCAATGGTCCCCTT---GGCGGCCTCGGCGTGGCATTTGCAGTAGTCTATAACCATGTC
 
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JMFN025A13+           TAAGATCTTGCTAGTTACATTAGGGACGGGGATGGTGATGGTGGTGTCATCGTTGTCCAC
rJMFF046O19-          TAAGATCTTGCTAGTTACCATAGGGACGGGGATGGTAATAGTGATGTCATCGTTATCCAC
JMFN015I19+           CAAGATCTTGCTAGTTACCTCGGGGACGGGGATGGTGATGGTGGTGTCATCGTTGTCCAC
JMFF046O19+           TAAGATCTTGCTAGTTACCATAGGGACGGGGATGGTAATAGTGATGTCATCGTTATCCAC
                      ____________________________________________________________
consensus             TAAGATCTTGCTAGTTACCATAGGGACGGGGATGGTAATAGTGATGTCATCGTTATCCAC
 
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JMFN025A13+           AATCATGTACTTGAGCATTTGTGACTTGAGCGCCACCGCCTCCTCCACCTCGAAGATCTC
rJMFF046O19-          AATCATGTACTTGAGTACCTGCGACTNCAGCGCCACCTCCTCATCCACCTTGAAGATCTC
JMFN015I19+           AATCATGTACTTGAGCATCTGCGACTCGAGCGCCACCGCCTCCTCCACCTGGAAGATCTC
JMFF046O19+           AATCATGTACTTGAGTACCTGCGACTCAAGCGCCACCTCCTCATCCACCTTGAAGATCTC
                      ____________________________________________________________
consensus             AATCATGTACTTGAGTACCTGCGACTCGAGCGCCACCTCCTCATCCACCTTGAAGATCTC
 
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JMFN025A13+           TCCGTC                                                      
rJMFF046O19-          TCCGTCGGAACTCTTCAAAATGATCATCTTTGA                           
JMFN015I19+           CCCGTCGGAACTCTTCAAAATGATCGTCTTTGAGGAAGACATCGGAATTTCGTAAGATGA
JMFF046O19+           TCCGTCGGAACTCTTCAAAATGATCATCTTTGAGGAAGACATCGGAACTTAGTAGGATGA
                      ____________________________________________________________
consensus             TCCGTCGGAACTCTTCAAAATGATCATCTTTGAGGAAGACATCGGAATTTCGTAGGATGA
 
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JMFN015I19+           AATTTGGGGAAAACCCAA                                          
JMFF046O19+           AATTTGGGAAAAAACCAAAGGGAATTTAACAAAGCAAAAAGAGCAAAGAAACCTATTATT
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consensus             AATTTGGGGAAAACCCAAAGGGAATTTAACAAAGCAAAAAGAGCAAAGAAACCTATTATT