Contig 001777:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002F09Sequence579001777 (4)ref|XP_009603108.1|1e-65PREDICTED: signal recognition particle 54 kDa protein 2-like [Nicotiana tomento758006971 (3)ref|NP_001234428.1|3e-87signal recognition particle 54 kDa protein 2 [Solanum lycopersicum] sp|P49972.1|
JMFF046H09Sequence594001777 (4)ref|XP_009603108.1|2e-42PREDICTED: signal recognition particle 54 kDa protein 2-like [Nicotiana tomento442006971 (3)
JMFS002F09Sequence485001777 (4)ref|XP_009603108.1|3e-29PREDICTED: signal recognition particle 54 kDa protein 2-like [Nicotiana tomento
JMSF008E23Sequence390001777 (4)ref|XP_009603108.1|2e-30PREDICTED: signal recognition particle 54 kDa protein 2-like [Nicotiana tomento786006971 (3)ref|NP_001234428.1|2e-91signal recognition particle 54 kDa protein 2 [Solanum lycopersicum] sp|P49972.1|

Alignment

This contig is upended


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JMFF002F09+                                    CCTACAAACATGACAACACTAGGCTTCCCTTTCTT
                      ____________________________________________________________
consensus                                      CCTACAAACATGACAACACTAGGCTTCCCTTTCTT
 
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JMFF002F09+           TGGTGTGAATGATGGTTTTCCAGGATCCAAAATCTTGCAAAGCTCGTTAAATACAGCCTG
JMFF046H09+                                                         TTAAATACAGCCTG
                      ____________________________________________________________
consensus             TGGTGTGAATGATGGTTTTCCAGGATCCAAAATCTTGCAAAGCTCGTTAAATACAGCCTG
 
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JMFF002F09+           TTGGATGATCTTACGCTTGTTGTGTCCAGCAGCTAGGTCATCAAGGTTGACAATCCGCTT
JMFS002F09+                                                              AATCCGCTT
JMSF008E23+                                                              AATCCGCTT
JMFF046H09+           TNGGATGATCTTACGCTGNTTGTGTCCAGCAGCTAGGTCATCAAGGTTGACAATCCGCTT
                      ____________________________________________________________
consensus             TTGGATGATCTTACGCTTGTTGTGTCCAGCAGCTAGGTCATCAAGGTTGACAATCCGCTT
 
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JMFF002F09+           GATATTGGTCTGCATATCACGGACTAGCTTGAACTGAACATCAGACTGGAGAAGAGCGCG
JMFS002F09+           GATATTGGTCTGCATATCACGGACTAGCTTGAACTGAACATCAGACTGGAGAAGAGCGCG
JMSF008E23+           GATATTGGTCTGCATATCACGGACTAGCTTGAACTGAACATCAGACTGGAGAAGAGCGCG
JMFF046H09+           GATATTGGTCTGCATATCACGGACTAGCTTGAACTGAACATCAGACTGGAGAAGAGCGCG
                      ____________________________________________________________
consensus             GATATTGGTCTGCATATCACGGACTAGCTTGAACTGAACATCAGACTGGAGAAGAGCGCG
 
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JMFF002F09+           AGTGATCTCGTTGAGGCATTCATTGAGAACCTTCTCGTCAATGATTGTCGCATTGCTCAT
JMFS002F09+           AGTGATCTCGTTGAGGCATTCATTGAGAACCTTCTCGTCAATGATTGTCGCATTGCTCAT
JMSF008E23+           AGTGATCTCGTTGAGGCATTCATTGAGAACCTTCTCGTCAATGATTGTCGCATTGCTCAT
JMFF046H09+           AGTGATCTCGTTGAGGCATTCATTGAGAACCTTCTCGTCAATGATTGTCGCATTGCTCAT
                      ____________________________________________________________
consensus             AGTGATCTCGTTGAGGCATTCATTGAGAACCTTCTCGTCAATGATTGTCGCATTGCTCAT
 
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JMFF002F09+           CTGCTGGAGAGCACGCGAAATGCTCCCTCCTAACTGTGCCAACACCATCTTGAAGAATGT
JMFS002F09+           CTGCTGGAGAGCACGCGAAATGCTCCCTCCTAACTGTGCCAACACCATCTTGAAGAATGT
JMSF008E23+           CTGCTGGAGAGCACGCGAAATGCTCCCTCCTAACTGTGCCAACACCATCTTGAAGAATGT
JMFF046H09+           CTGCTGGAGAGCACGCGAAATGCTCCCTCCTAACTGTGCCAACACCATCTTGAAGAATGT
                      ____________________________________________________________
consensus             CTGCTGGAGAGCACGCGAAATGCTCCCTCCTAACTGTGCCAACACCATCTTGAAGAATGT
 
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JMFF002F09+           TGAAATTCAGAGTCTGATGATAAGAGAATTTGATTGAAGAATTTCCAGCGAGTGTTAGGG
JMFS002F09+           TGAAATTCAGAGTCTGATGATAAGAGAATTTGATTGAAGAATTTCCAGCGAGTGTTAGGG
JMSF008E23+           TGAAATTCAGAGTCTGATGATAAGAGAATTTGATTGAAGAATTTCCAGCGAGTGTTAGGG
JMFF046H09+           TGAAATTCAGAGTCTGATGATAAGAGAATTTGATTGAAGAATTTCCAGCGAGTGTTAGGG
                      ____________________________________________________________
consensus             TGAAATTCAGAGTCTGATGATAAGAGAATTTGATTGAAGAATTTCCAGCGAGTGTTAGGG
 
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JMFF002F09+           CTAGGGGTTGAAGAATTCTGTCTTGGGTGTCAGGTAAGCATTTCAATTGTTATGAAACCA
JMFS002F09+           CTAGGGGTTGAAGAATTCTGTCTTGGGTGTCAGGTAAGCATTTCAATTGTTATGAAACCA
JMSF008E23+           CTAGGGGTTGAAGAATTCTGTCTTGGGTGTCAGGTAAGCATTTCAATTGTTATGAAACCA
JMFF046H09+           CTAGGGGTTGAAGAATTCTGTCTTGGGTGTCAGGTAAGCATTTCAATTGTTATGAAACCA
                      ____________________________________________________________
consensus             CTAGGGGTTGAAGAATTCTGTCTTGGGTGTCAGGTAAGCATTTCAATTGTTATGAAACCA
 
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JMFF002F09+           ACCACCCACCAAGGATATCAGAACCGCACTGGGATAATAGAGAAAAATGATATGAAGTAT
JMFS002F09+           ACCACCCACCAAGGATATCAGAACCGCACTGGGATAATAGAGAAAAATGATATGAAGTAT
JMSF008E23+           ACCACCCACCAAGGATATCAGAACCGCACTGGGATAATAGAGAAAAATGATATGAAGTAT
JMFF046H09+           ACCACCCACCAAGGATATCAGAACCGCACTGGGATAATAGAGAAAAATGATATGAAGTAT
                      ____________________________________________________________
consensus             ACCACCCACCAAGGATATCAGAACCGCACTGGGATAATAGAGAAAAATGATATGAAGTAT
 
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JMFF002F09+           TTCAGGTTCGTGTCAATATTTCTGGTTAGGGTTTGTTGATTTCCCCTTTCTTTCTGAGGT
JMFS002F09+           TTCAGGTTCGTGTCAATATTTCTGGTTAGGGTTTGTTGATTTCCCCTTTCTTTCTGAGGT
JMSF008E23+           TTCAGGTTCGTGTCAAT                                           
JMFF046H09+           TTCAGGTTCGTGTCAATATTTCTGGTTAGGGTTTGTTGATTTCCCCTTTCTTTCTGAGGT
                      ____________________________________________________________
consensus             TTCAGGTTCGTGTCAATATTTCTGGTTAGGGTTTGTTGATTTCCCCTTTCTTTCTGAGGT
 
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JMFF002F09+           TTCT                                                        
JMFS002F09+           TTCTGGGAAGACGACGGAATTAGCTGTATTTACTACTCCGTAATTCTGAAGTCTTA    
JMFF046H09+           TTCTGGGAAGACGACGGAATTAGCTGTATTTACTACTCCGTAATTCTGATGTCTTATCTT
                      ____________________________________________________________
consensus             TTCTGGGAAGACGACGGAATTAGCTGTATTTACTACTCCGTAATTCTGATGTCTTATCTT