Contig 001776:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF046D22Sequence472001776 (2)360024413
JMFS121D11Sequence577001776 (2)ref|XP_009792528.1|3e-28PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X1 [Nicotiana

Alignment

This contig is upended


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JMFS121D11+                TGCTGCTTGATATGAGTCCCCAAATCCTCAGCCAAAACCGAGAAGAAAACCGAAG
                      ____________________________________________________________
consensus                  TGCTGCTTGATATGAGTCCCCAAATCCTCAGCCAAAACCGAGAAGAAAACCGAAG
 
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JMFS121D11+           ATTGCGAGGATTGAGGAGAAAGCGAGTGGTGGTTGTGTTGCCGGTGGTCGGTGAAGGCCA
                      ____________________________________________________________
consensus             ATTGCGAGGATTGAGGAGAAAGCGAGTGGTGGTTGTGTTGCCGGTGGTCGGTGAAGGCCA
 
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JMFS121D11+           ATCGGAGGCCGGTGGACACAACATTCGGGTGCAGCTGCGTGAGATCGATAAGCTGAGACG
                      ____________________________________________________________
consensus             ATCGGAGGCCGGTGGACACAACATTCGGGTGCAGCTGCGTGAGATCGATAAGCTGAGACG
 
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JMFS121D11+           GCTGAGATTGCAACGAAATCAATGGCGGATTCGGATTCGGATTCGGATTAGGGTTACTCA
                      ____________________________________________________________
consensus             GCTGAGATTGCAACGAAATCAATGGCGGATTCGGATTCGGATTCGGATTAGGGTTACTCA
 
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JMFS121D11+           TCGCCGCCGCAGTAGTACTACTGGTATGCTCTCTCCCCCTCTTTCTCGAATTCGCATCAA
                      ____________________________________________________________
consensus             TCGCCGCCGCAGTAGTACTACTGGTATGCTCTCTCCCCCTCTTTCTCGAATTCGCATCAA
 
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JMFS121D11+           CTCCGTGATTGAACAGCATTTCCGTTTCATCAATAAACGTTCCCCCACCAGCACCGCCGC
                      ____________________________________________________________
consensus             CTCCGTGATTGAACAGCATTTCCGTTTCATCAATAAACGTTCCCCCACCAGCACCGCCGC
 
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JMFS121D11+           CGCCGCCGCCGGAATAAGGGTGCAGCAAGGAGTAATCGTTCCCCAGCGGAGGAGCCGCCG
                      ____________________________________________________________
consensus             CGCCGCCGCCGGAATAAGGGTGCAGCAAGGAGTAATCGTTCCCCAGCGGAGGAGCCGCCG
 
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JMFS121D11+           CCTTACCGTCCTGACCCCCACTTCTGTTTAAGAAGAGAACATTAGAAGGGTGGTGTTGAG
JMFF046D22+                                   TGTTTAAGAAGAGAACATTAGAAGGGTGGTGTTGAG
                      ____________________________________________________________
consensus             CCTTACCGTCCTGACCCCCACTTCTGTTTAAGAAGAGAACATTAGAAGGGTGGTGTTGAG
 
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JMFS121D11+           CTTGAACCGCCATTGCCAAATGCTAAGAAAGGATATATATGGGATTGGGAATAGAATTGA
JMFF046D22+           CTTGAACCGCCATTGCCAAATGCTAAGAAAGGATATATATGGGATTGGGAATAGAATTGA
                      ____________________________________________________________
consensus             CTTGAACCGCCATTGCCAAATGCTAAGAAAGGATATATATGGGATTGGGAATAGAATTGA
 
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JMFS121D11+           AGGAATGG                                                    
JMFF046D22+           AGGAATGGGAGGTGAATAGAGGTGTGAATAGTTAAGGGATACACATAAACAGCATGAATC
                      ____________________________________________________________
consensus             AGGAATGGGAGGTGAATAGAGGTGTGAATAGTTAAGGGATACACATAAACAGCATGAATC
 
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JMFF046D22+           ACACACAAATCTTTATTGGTTTCCAGAGAGAGAAACTATAGTTGCAGAAGAAGAAAGGAA
                      ____________________________________________________________
consensus             ACACACAAATCTTTATTGGTTTCCAGAGAGAGAAACTATAGTTGCAGAAGAAGAAAGGAA
 
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JMFF046D22+           TGGGTATATATATATATAGATATAGATATATATGTAGTGAGTGAGTGAATGAATGAATGA
                      ____________________________________________________________
consensus             TGGGTATATATATATATAGATATAGATATATATGTAGTGAGTGAGTGAATGAATGAATGA
 
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JMFF046D22+           ATCTTTTGAGTCAAATGGGAAAACCAGAAAGTGTCACCACCACCATTAACAACACCATTC
                      ____________________________________________________________
consensus             ATCTTTTGAGTCAAATGGGAAAACCAGAAAGTGTCACCACCACCATTAACAACACCATTC
 
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JMFF046D22+           CAGCTGCTTCTCACCTAAACACACCCAAAATCTTCCCTTATTTTCGCCTTTTCTTTCTCT
                      ____________________________________________________________
consensus             CAGCTGCTTCTCACCTAAACACACCCAAAATCTTCCCTTATTTTCGCCTTTTCTTTCTCT
 
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JMFF046D22+           TTGCTTCCTTCCAGAGAGAGAGAGAGAGAGAGAGAGATGAAATGAGTCCAAGAAAAGAAC
                      ____________________________________________________________
consensus             TTGCTTCCTTCCAGAGAGAGAGAGAGAGAGAGAGAGATGAAATGAGTCCAAGAAAAGAAC