Contig 001769:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF038K22Sequence559001769 (2)ref|XP_009627490.1|4e-50PREDICTED: ultraviolet-B receptor UVR8 isoform X9 [Nicotiana tomentosiformis]730006958 (2)ref|XP_010272766.1|2e-68PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform X1 [Nelumbo nucif
JMFF045E22Sequence613001769 (2)ref|XP_009627490.1|3e-62PREDICTED: ultraviolet-B receptor UVR8 isoform X9 [Nicotiana tomentosiformis]660006958 (2)ref|XP_002273073.1|2e-38PREDICTED: ultraviolet-B receptor UVR8 [Vitis vinifera] emb|CBI21635.3| unnamed

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF045E22+ CAAGCTGCCCATN
                      ____________________________________________________________
consensus CAAGCTGCCCATN
 
. : . : . : . : . : . :
JMFF038K22+ TAGCACAAGAATGATGATA
JMFF045E22+ TGAGTTCTTTCCCCACACATAGAGTTCACCATCAACTGTGATAGCACAAGAATGATGATA
                      ____________________________________________________________
consensus TGAGTTCTTTCCCCACACATAGAGTTCACCATCAACTGTGATAGCACAAGAATGATGATA
 
. : . : . : . : . : . :
JMFF038K22+ ACCCGCAGAAATTTTTATAATGTCTTTGGGAAGTGCGGCAACACGAACTGGTTCGGTAGT
JMFF045E22+ ACCCGCAGAAATTTTTATAATGTCTTTGGGAAGTGCGGCAACACGAACTGGTTCGGTAGT
                      ____________________________________________________________
consensus ACCCGCAGAAATTTTTATAATGTCTTTGGGAAGTGCGGCAACACGAACTGGTTCGGTAGT
 
. : . : . : . : . : . :
JMFF038K22+ ATAACTTTTATCATCTGAAATGCCTAGCTGTCCAAAATCATTGAGACCACAAGCATAAAC
JMFF045E22+ ATAACTTTTATCATCTGAAATGCCTAGCTGTCCAAAATCATTGAGACCACAAGCATAAAC
                      ____________________________________________________________
consensus ATAACTTTTATCATCTGAAATGCCTAGCTGTCCAAAATCATTGAGACCACAAGCATAAAC
 
. : . : . : . : . : . :
JMFF038K22+ ACTGCCATTTTCCGTGAGGAAAAGAGTGTGAGCACCGCCACAAGCGATGTCGCGGAGGCT
JMFF045E22+ ACTGCCATTTTCCGTGAGGAAAAGAGTGTGAGCACCGCCACAAGCGATGTCGCGGAGGCT
                      ____________________________________________________________
consensus ACTGCCATTTTCCGTGAGGAAAAGAGTGTGAGCACCGCCACAAGCGATGTCGCGGAGGCT
 
. : . : . : . : . : . :
JMFF038K22+ CTGATTATGAAAAGCGGAAGGTTGCAGAGTGTCAGGAGTCCACCGCGATTCAATGCTGCC
JMFF045E22+ CTGATTATGAAAAGCGGAAGGTTGCAGAGTGTCAGGAGTCCACCGCGATTCAATGCTGCC
                      ____________________________________________________________
consensus CTGATTATGAAAAGCGGAAGGTTGCAGAGTGTCAGGAGTCCACCGCGATTCAATGCTGCC
 
. : . : . : . : . : . :
JMFF038K22+ GTGTCCCAGCCTCCCGAAATCGCCGTTTCCCCACAAAGCGGCGAACCTCTTGCCGTTGCC
JMFF045E22+ GTGTCCCAGCCTCCCGAAATCGCCGTTTCCCCACAAAGCGGCGAACCTCTTGCCGTTGCC
                      ____________________________________________________________
consensus GTGTCCCAGCCTCCCGAAATCGCCGTTTCCCCACAAAGCGGCGAACCTCTTGCCGTTGCC
 
. : . : . : . : . : . :
JMFF038K22+ GTCGGCAGCGGCGGAAGAAATCCAGAGCCGAAGCCTTGATCCTACAATGCCATGACTTTT
JMFF045E22+ GTCGGCAGCGGCGGAAGAAATCCAGAGCCGAAGCCTTGATCCTACAATGCCATGACTTTT
                      ____________________________________________________________
consensus GTCGGCAGCGGCGGAAGAAATCCAGAGCCGAAGCCTTGATCCTACAATGCCATGACTTTT
 
. : . : . : . : . : . :
JMFF038K22+ CAGAATTCCGATTGTGGTATTATTCCTCGTATTCCCGACCGCTCTCGCTAGCATCAGAAC
JMFF045E22+ CAGAATTCCGATTGTGGTATTATTCCTCGTATTCCCGACCGCTCTCGCTAGCATCAGAAC
                      ____________________________________________________________
consensus CAGAATTCCGATTGTGGTATTATTCCTCGTATTCCCGACCGCTCTCGCTAGCATCAGAAC
 
. : . : . : . : . : . :
JMFF038K22+ GTTCTTCTTCATTATCATCGGCATTACTTTCTACGATAACCAGTTCATCTTCGTGATCGA
JMFF045E22+ GTTCTTCTTCATTATCATCGGCATTACTTTCTACGATAACCAGTTCATCTTCGTGATCGA
                      ____________________________________________________________
consensus GTTCTTCTTCATTATCATCGGCATTACTTTCTACGATAACCAGTTCATCTTCGTGATCGA
 
. : . : . : . : . : . :
JMFF038K22+ AGAAGAAGAAGAAAGATTAACAGAAGAAAATACGAGAAAGGAACTAAACTGATGGCCCCC
JMFF045E22+ AGAAGAAGAAGAAAGATTAACAGAAGAAAATACGAGAAAGGAACTAAACTGATGGCCCCC
                      ____________________________________________________________
consensus AGAAGAAGAAGAAAGATTAACAGAAGAAAATACGAGAAAGGAACTAAACTGATGGCCCCC