Contig 001765:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF044G15Sequence652001765 (4)emb|CDP10439.1|1e-57unnamed protein product [Coffea canephora]390015970
JMFS085D07Sequence606001765 (4)emb|CDP10439.1|1e-56unnamed protein product [Coffea canephora]
JMFS092C01Sequence617001765 (4)emb|CDP10439.1|3e-57unnamed protein product [Coffea canephora]
JMSF052A17Sequence668001765 (4)emb|CDP10439.1|7e-115unnamed protein product [Coffea canephora]930021617ref|XP_009595072.1|1e-93PREDICTED: topless-related protein 4-like isoform X1 [Nicotiana tomentosiformis

Alignment

This contig is upended


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JMSF052A17+                                                                     TG
                      ____________________________________________________________
consensus                                                                       TG
 
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JMSF052A17+           GTGCTGCCAATTCAAACTCTGATTAATCAATGTCCGGAGCCTTGAGTTCTTCAAGGTNGG
                      ____________________________________________________________
consensus             GTGCTGCCAATTCAAACTCTGATTAATCAATGTCCGGAGCCTTGAGTTCTTCAAGGTNGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF052A17+           AAAGTTAAGTTTATCACGAAACAGGGGGTTTGCTTCAATCAATTTTTTCAGCTCACCAAG
                      ____________________________________________________________
consensus             AAAGTTAAGTTTATCACGAAACAGGGGGTTTGCTTCAATCAATTTTTTCAGCTCACCAAG
 
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JMSF052A17+           CATAATGTTCCTAGCAGAGTTGGTGTCTCCATATTTAGATAATTGCTCATTGTCTCTGAA
                      ____________________________________________________________
consensus             CATAATGTTCCTAGCAGAGTTGGTGTCTCCATATTTAGATAATTGCTCATTGTCTCTGAA
 
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JMSF052A17+           ATTCTCAAGAGTCAGAAGCTGTGTTATTTCTTTGAAAAGATCTTCATTAAAAGCAGAAAA
JMFS092C01+                                       TCTTTAAAAAGGTCTTCATTAAATGCTGAAAA
                      ____________________________________________________________
consensus             ATTCTCAAGAGTCAGAAGCTGTGTTATTTCTTTGAAAAGGTCTTCATTAAATGCTGAAAA
 
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JMSF052A17+           AACCTTCAAGTCCTTTACTAGTATTTCAACACCTTTAGAGCGATCCTTCCTGTCAAGAGC
JMFS092C01+           CACTTTCAAGTCCTTTACTAGAATGTCAACAGCTTTAGCACGATCCTTCCTGTCAAGGGC
                      ____________________________________________________________
consensus             CACTTTCAAGTCCTTTACTAGTATTTCAACAGCTTTAGCGCGATCCTTCCTGTCAAGGGC
 
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JMSF052A17+           TTCGAGATATTTTTGCTTTCTGATCTCAAAGAAGATTTTCATTGAATATCTGTTATCATC
JMFS085D07+            TCAAGATACTTTTGTTTTCGGATTTCAAAGAAAATTTTCATTGAATATCTGTTGTCATC
JMFS092C01+           TTCAAGATACTTTTGTTTTCGGATTTCAAAGAAAATTTTCATTGAATATCTGTTGTCATC
JMFF044G15+            TCAAGATACTTTTGTTTTCGGATTTCAAAGAAAATTTTCATTGAATATCTGTTGTCATC
                      ____________________________________________________________
consensus             TTCAAGATACTTTTGTTTTCGGATTTCAAAGAAAATTTTCATTGAATATCTGTTGTCATC
 
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JMSF052A17+           AACCTTTGTGAAGCCTGAAAGATACTTTTCTACCTCATCCCATTCTCCATTTGTTACCAA
JMFS085D07+           AACCTTCGTGAAGCCTGATAGATACTTTTCCACCTCATCCCAGTCTCCATTTGTCACCAA
JMFS092C01+           AACCTTCGTGAAGCCTGATAGATACTTTTCCACCTCATCCCAGTCTCCATTTGTCACCAA
JMFF044G15+           AACCTTCGTGAAGCCTGATAGATACTTTTCCACCTCATCCCAGTCTCCATTTGTCACCAA
                      ____________________________________________________________
consensus             AACCTTCGTGAAGCCTGATAGATACTTTTCCACCTCATCCCAGTCTCCATTTGTCACCAA
 
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JMSF052A17+           TTC                                                         
JMFS085D07+           TTCCTCAAAATATCGCATATTAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGT
JMFS092C01+           TTCCTCAAAATATCGCATATTAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGT
JMFF044G15+           TTCCTCAAAATATCGCATATTAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGT
                      ____________________________________________________________
consensus             TTCCTCAAAATATCGCATATTAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGT
 
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JMFS085D07+           CTCTTTGAATTTCTCCTCATCAAGAAACTGAAGAATTAAAAACACGAGCTCTCTGCTCAG
JMFS092C01+           CTCTTTGAATTTCTCCTCATCAAGAAACTGAAGAATTAAAAACACGAGCTCTCTGCTCAG
JMFF044G15+           CTCTTTGAATTTCTCCTCATCAAGAAACTGAAGAATTAAAAACACGAGCTCTCTGCTCAG
                      ____________________________________________________________
consensus             CTCTTTGAATTTCTCCTCATCAAGAAACTGAAGAATTAAAAACACGAGCTCTCTGCTCAG
 
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JMFS085D07+           AGACGACATACTCGTTTTCTTCCCCTCAGTCTCCTCACCCTCGCAGATCAACACAAACGC
JMFS092C01+           AGACGACATACTCGTTTTCTTCCCCTCAGTCTCCTCACCCTCGCAGATCAACACAAACGC
JMFF044G15+           AGACGACATACTCGTTTTCTTCCCCTCAGTCTCCTCACCCTCGCAGATCAACACAAACGC
                      ____________________________________________________________
consensus             AGACGACATACTCGTTTTCTTCCCCTCAGTCTCCTCACCCTCGCAGATCAACACAAACGC
 
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JMFS085D07+           CGCAATTACGCAGCCTCCATCACCAATTCACCAAATTCAAACTCTCAAGAGCCTAAAATA
JMFS092C01+           CGCAATTACGCAGCCTCCATCACCAATTCACCAAATTCAAACTCTCAAGAGCCTAAAATA
JMFF044G15+           CGCAATTACGCAGCCTCCATCACCAATTCACCAAATTCAAACTCTCAAGAGCCTAAAATA
                      ____________________________________________________________
consensus             CGCAATTACGCAGCCTCCATCACCAATTCACCAAATTCAAACTCTCAAGAGCCTAAAATA
 
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JMFS085D07+           CATGCATACATCT                                               
JMFS092C01+           CATGCATACATCTGCATATATACTCAAATACGAATGTGAATACAGAGTATACATAGCGTT
JMFF044G15+           CATGCATACATCTGCATATATACTCAAATACGAATGTGAATACAGAGTATACATAGCGTT
                      ____________________________________________________________
consensus             CATGCATACATCTGCATATATACTCAAATACGAATGTGAATACAGAGTATACATAGCGTT
 
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JMFS092C01+           CATGTAAATGCATAGTTCTGTGTATATGTAGGGGTTGGGGGAAGCACTGGTACCTTGGAA
JMFF044G15+           CATGTAAATGCATAGTTCTGTGTATATGTAGGGGTTGGGGGAAGCACTGGTACCTTGGAA
                      ____________________________________________________________
consensus             CATGTAAATGCATAGTTCTGTGTATATGTAGGGGTTGGGGGAAGCACTGGTACCTTGGAA
 
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JMFS092C01+           TGAATGAGAGAGGAAACAGATCAGGGTTTTTCTGTAAAGAGAA                 
JMFF044G15+           TGAATGAGAGAGGAAACAGATCAGGGTTTTTCTGTAAAGAGAATGGTACTTTTCGTTACT
                      ____________________________________________________________
consensus             TGAATGAGAGAGGAAACAGATCAGGGTTTTTCTGTAAAGAGAATGGTACTTTTCGTTACT