Contig 001764:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF044B20Sequence637001764 (4)ref|XP_006354013.1|4e-49PREDICTED: random slug protein 5-like [Solanum tuberosum]
JMFS038F10Sequence601001764 (4)ref|XP_009605251.1|3e-78PREDICTED: random slug protein 5 isoform X2 [Nicotiana tomentosiformis]
JMFS101A10Sequence617001764 (4)ref|XP_009762505.1|5e-83PREDICTED: random slug protein 5 isoform X2 [Nicotiana sylvestris]
JMFS112E11Sequence620001764 (4)ref|XP_009762505.1|3e-105PREDICTED: random slug protein 5 isoform X2 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS112E11+                                                                     CT
                      ____________________________________________________________
consensus                                                                       CT
 
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JMFS112E11+           TGCAAAACATGAGCTGTTTCTTTAGTCACTTTCAATGAGATGTGTGAAACATTAAAGCCA
                      ____________________________________________________________
consensus             TGCAAAACATGAGCTGTTTCTTTAGTCACTTTCAATGAGATGTGTGAAACATTAAAGCCA
 
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JMFS101A10+                               CATCTGTTCTTGATCTTCAGGAAGGTTTACGATAGCATTC
JMFS038F10+                                               TCAGGAAGGTTTACGATAGCATTC
JMFS112E11+           TGGAAATCGATCAACCACACCATCTGTTCTTGATCTTCAGGAAGGTTTACGATAGCATTC
                      ____________________________________________________________
consensus             TGGAAATCGATCAACCACACCATCTGTTCTTGATCTTCAGGAAGGTTTACGATAGCATTC
 
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JMFS101A10+           TCCATGCAGTACACTAAGTACCTGATTTGGCCTTTAGTTGATTTGGTGTTCTGGCATCTG
JMFS038F10+           TCCATGCAGTACACTAAGTACCTGATTTGGCCTTTAGTTGATTTGGTGTTCTGGCATCTG
JMFS112E11+           TCCATGCAGTACACTAAGTACCTGATTTGGCCTTTAGTTGATTTGGTGTTCTGGCATCTG
                      ____________________________________________________________
consensus             TCCATGCAGTACACTAAGTACCTGATTTGGCCTTTAGTTGATTTGGTGTTCTGGCATCTG
 
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JMFS101A10+           GGTCTCATGACTAGAACTGTTCTTCCATGTTTATCTTTATAATCGGACCTGTAAATCTTT
JMFS038F10+           GGTCTCATGACTAGAACTGTTCTTCCATGTTTATCTTTATAATCGGACCTGTAAATCTTT
JMFS112E11+           GGTCTCATGACTAGAACTGTTCTTCCATGTTTATCTTTATAATCGGACCTGTAAATCTTT
JMFF044B20+                                  TCCATGTTTATCTTANTAATCGGACCTGTAAATCTTT
                      ____________________________________________________________
consensus             GGTCTCATGACTAGAACTGTTCTTCCATGTTTATCTTTATAATCGGACCTGTAAATCTTT
 
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JMFS101A10+           CCAGTTTCAGCCTCAGAGGCAATATCATCCCAGCGGATATTTTCTGGTTTGTATTCCAGT
JMFS038F10+           CCAGTTTCAGCCTCAGAGGCAATATCATCCCAGCGGATATTTTCTGGTTTGTATTCCAGT
JMFS112E11+           CCAGTTTCAGCCTCAGAGGCAATATCATCCCAGCGGATATTTTCTGGTTTGTATTCCAGT
JMFF044B20+           CCAGTTTCAGCCTCAGAGGCAATATCATCCCAGCGGATATTTTCTGGTTTGTATTCCAGT
                      ____________________________________________________________
consensus             CCAGTTTCAGCCTCAGAGGCAATATCATCCCAGCGGATATTTTCTGGTTTGTATTCCAGT
 
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JMFS101A10+           CTCCACTTCAGTGTTGCTTTAAGCATCTTAACAGCCTTTTTGACATTCCAGTTTCGTGCC
JMFS038F10+           CTCCACTTCAGTGTTGCTTTAAGCATCTTAACAGCCTTTTTGACATTCCAGTTTCGTGCC
JMFS112E11+           CTCCACTTCAGTGTTGCTTTAAGCATCTTAACAGCCTTTTTGACATTCCAGTTTCGTGCC
JMFF044B20+           CTCCACTTCAGTGTTGCTTTAAGCATCTTAACAGCCTTTTTGACATTCCAGTTTCGTGCC
                      ____________________________________________________________
consensus             CTCCACTTCAGTGTTGCTTTAAGCATCTTAACAGCCTTTTTGACATTCCAGTTTCGTGCC
 
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JMFS101A10+           CTTAAATATCTTGATATGGATGCATCTGAACAATACAGAGCCAATTTACCAGACAGTGGG
JMFS038F10+           CTTAAATATCTTGATATGGATGCATCTGAACAATACAGAGCCAATTTACCAGACAGTGGG
JMFS112E11+           CTTAAATATCTTGATATGGATGCATCTGAACAATACAGAGCCAATTTACCAGACAGTGGG
JMFF044B20+           CTTAAATATCTTGATATGGATGCATCTGAACAATACAGAGCCAATTTACCAGACAGTGGG
                      ____________________________________________________________
consensus             CTTAAATATCTTGATATGGATGCATCTGAACAATACAGAGCCAATTTACCAGACAGTGGG
 
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JMFS101A10+           CCAATCAACTTCCTCACTTCATCAATCT                                
JMFS038F10+           CCAATCAACTTCCTCACTTCATCAATCT                                
JMFS112E11+           CCAATCAACTTCCTCACTTCATCAATCTTTTGCTTCTGTGCTTCTGGGCCCAAAGAATTC
JMFF044B20+           CCAATCAACTTCCTCACTTCATCAATCTTTTGCTTCTGTGCTTCTGGGCCCAAAGAATTC
                      ____________________________________________________________
consensus             CCAATCAACTTCCTCACTTCATCAATCTTTTGCTTCTGTGCTTCTGGGCCCAAAGAATTC
 
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JMFS112E11+           TCATAACCATTAGTCGAGGGCTTCTTAGACCCAATATTCATAGTCGTGCAGTGCAGGAAA
JMFF044B20+           TCATAACCATTAGTCGAGGGCTTCTTAGACCCAATATTCATAGTCGTGCAGTGCAGGAAA
                      ____________________________________________________________
consensus             TCATAACCATTAGTCGAGGGCTTCTTAGACCCAATATTCATAGTCGTGCAGTGCAGGAAA
 
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JMFS112E11+           TGTGTTTACTTTAAGGTAAAAGTATTTTGTCTGATCCTGTCTCTTGACTGTTTTTCT   
JMFF044B20+           TGTGTTTACTTTAAGGTAAAAGTATTTTGTCTGATCCTGTCTCTTGACTGTTTTTCTGTA
                      ____________________________________________________________
consensus             TGTGTTTACTTTAAGGTAAAAGTATTTTGTCTGATCCTGTCTCTTGACTGTTTTTCTGTA
 
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JMFF044B20+           TGGGGGTATCGAGATTTCAGGAGATTGAAATGGTGGAGATTTTGAACGGGCAAAAGCCCA
                      ____________________________________________________________
consensus             TGGGGGTATCGAGATTTCAGGAGATTGAAATGGTGGAGATTTTGAACGGGCAAAAGCCCA
 
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JMFF044B20+           TGGAATGGATATAGAGAGTCAACCGAGAAAAATGGTTGCCTACATCAGCGAGAAGGAAAT
                      ____________________________________________________________
consensus             TGGAATGGATATAGAGAGTCAACCGAGAAAAATGGTTGCCTACATCAGCGAGAAGGAAAT
 
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JMFF044B20+           ATGGGCGGCATTGCTGCTAAAATAGTAATAATAATATATTAGGCAAGTAAATAATCTCGT
                      ____________________________________________________________
consensus             ATGGGCGGCATTGCTGCTAAAATAGTAATAATAATATATTAGGCAAGTAAATAATCTCGT
 
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JMFF044B20+           ATATATTTATTAATTATATATAGAAAAAGCAATGTGATCTACAGTTGGAGAATGGCGCAC
                      ____________________________________________________________
consensus             ATATATTTATTAATTATATATAGAAAAAGCAATGTGATCTACAGTTGGAGAATGGCGCAC