Contig 001752:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007B23Sequence502001752 (6)ref|XP_009796960.1|4e-54PREDICTED: dnaJ homolog subfamily B member 6-B-like [Nicotiana sylvestris]777001752 (6)ref|XP_009796960.1|9e-84PREDICTED: dnaJ homolog subfamily B member 6-B-like [Nicotiana sylvestris]
JMFF040P20Sequence512001752 (6)ref|XP_009796960.1|2e-24PREDICTED: dnaJ homolog subfamily B member 6-B-like [Nicotiana sylvestris]702001752 (6)ref|XP_009796960.1|1e-54PREDICTED: dnaJ homolog subfamily B member 6-B-like [Nicotiana sylvestris]
JMSF021J04Sequence677001752 (6)ref|XP_009796960.1|2e-75PREDICTED: dnaJ homolog subfamily B member 6-B-like [Nicotiana sylvestris]653012222 (5)ref|XP_010920046.1|1e-100PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
JMSF041O07Sequence739001752 (6)ref|XP_009796960.1|1e-83PREDICTED: dnaJ homolog subfamily B member 6-B-like [Nicotiana sylvestris]765021556

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF040P20- AATCTCTAATGCA
rJMFF007B23- AATTTTTTCCACAAAGTTTCCAAATCTCTAATGCA
                      ____________________________________________________________
consensus AATTTTTTCCACAAAGTTTCCAAATCTCTAATGCA
 
. : . : . : . : . : . :
rJMFF040P20- ACTGAATTACTTAGAATGTCTTTTTTTTTCCTTGGGAAAAATCTAATCTGCCTCCATCTA
rJMFF007B23- ACTGAATTACTTAGAATGTCTTTTTTTTTCCTTGGGAAAAATCTAATCTGCCTCCATCTA
                      ____________________________________________________________
consensus ACTGAATTACTTAGAATGTCTTTTTTTTTCCTTGGGAAAAATCTAATCTGCCTCCATCTA
 
. : . : . : . : . : . :
rJMFF040P20- AATCAAGTAAATCCACCCTCCATACCAATTAAGTACAACACATGAGGAAAGAATATACAA
rJMFF007B23- AATCAAGTAAATCCACCCTCCATACCAATTAAGTACAACACATGAGGAAAGATAATACAA
                      ____________________________________________________________
consensus AATCAAGTAAATCCACCCTCCATACCAATTAAGTACAACACATGAGGAAAGATTATACAA
 
. : . : . : . : . : . :
JMSF041O07+ AGTGATAAGAGGTGCCATTGCCATTGAC
rJMFF040P20- GTGGTGGTGGATAGGCAGAATTTATTACTAACAGTGATAAGAGGTGCCATTGCCATTGAC
rJMFF007B23- GTGGTGGTGGATAGGCAGAATTTATTACTAACAGTGATAAGAGGTGCCATTGCCATTGAC
                      ____________________________________________________________
consensus GTGGTGGTGGATAGGCAGAATTTATTACTAACAGTGATAAGAGGTGCCATTGCCATTGAC
 
. : . : . : . : . : . :
JMSF041O07+ ATTAGAAGTACGGTTTTGAGCTGTCCTCAAGCTAGGTCCTGAATCCCGTGGTCTCTTCTT
JMFF007B23+ CTT
rJMFF040P20- ATTANAAGTACGGTTTTGAGCTGTCCTCAAGCTAGGTCCTGAATCCCGTGGTCTCTTCTT
rJMFF007B23- ATTANAAGTACGGTTTTGAGCTGTCCTCAAGCTAGGTCCTGAATCCCGTGGTCTCTTCTT
JMSF021J04+ TCAAGCTAGGTCCTGAATCCCGTGGTCTCTTCTT
                      ____________________________________________________________
consensus ATTAGAAGTACGGTTTTGAGCTGTCCTCAAGCTAGGTCCTGAATCCCGTGGTCTCTTCTT
 
. : . : . : . : . : . :
JMSF041O07+ CACCATTGGATCTTCATTGTCCATCATGTTCGCTAAATCTCGGCCAAACATCTCCAC-AA
JMFF007B23+ CACCATTGGATCTTCATTGTCCATCATGTTCGCTAAATCTCGGCCAAACATCTCCACAAA
rJMFF040P20- CACCATTGGATCTTCATTGTCCATCATGTTCGCTAAATCTCGGCCAAACATCTCCAC-AA
rJMFF007B23- CACCATTGGATCTTCATTGTCCATCATGTTCGCTAAATCTCGGCCAAACATCTCCAC-AA
JMSF021J04+ CACCATTGGATCTTCATTGTCCATCATGTTCGCTAAATCTCGGCCAAACATCTCCAC-AA
                      ____________________________________________________________
consensus CACCATTGGATCTTCATTGTCCATCATGTTCGCTAAATCTCGGCCAAACATCTCCAC-AA
 
. : . : . : . : . : . :
JMSF041O07+ ATGTCCTCTGCAAATCCTCAAGACTTTCCTCCT-CCTGGGTCCCAACATTTTGGTCCATC
JMFF007B23+ ATGTCCTATGCAAATCCTCAAGACTTTCCTCCTCCCTGGGTCCCAACATTTTGGTCCATC
rJMFF040P20- ATGTCCTCTGCAAATCCTCAAGACTTTCCTCCT-CCTGGGTCCCAACATTTTGGTCCATC
rJMFF007B23- ATGTCCTATGCAAATCCTCAAGACTTTCCTCCT-CCTGGGTCCCAACATTTTGGTCCATC
JMSF021J04+ ATGTCCTCTGCAAATCCTCAAGACTTTCCTCCT-CCTGGGTCCCAACATTTTGGTCCATC
                      ____________________________________________________________
consensus ATGTCCTCTGCAAATCCTCAAGACTTTCCTCCT-CCTGGGTCCCAACATTTTGGTCCATC
 
. : . : . : . : . : . :
JMSF041O07+ ATGTTTATCAAATCATGCAGGAAATCACCCATTCCTTCGTCTTCTTCAAGCAGATCAAGG
JMFF007B23+ ATGTTTATCAAATCATGCAGGAAATCACCCATTCCTTCGTCTTCTTCAAGCAGATCAAGG
rJMFF040P20- ATGTTTATCAAATCATGCAGGAAATCACCCATTCCTTCGTCTTCTTCAAGCAGATCAAGG
rJMFF007B23- ATGTTTATCAAATCATGCAGGAAATCACCCATTCCTTCGTCTTCTTCAAGCAGATCAAGG
JMSF021J04+ ATGTTTATCAAATCATGCAGGAAATCACCCATTCCTTCGTCTTCTTCAAGCAGATCAAGG
                      ____________________________________________________________
consensus ATGTTTATCAAATCATGCAGGAAATCACCCATTCCTTCGTCTTCTTCAAGCAGATCAAGG
 
. : . : . : . : . : . :
JMSF041O07+ AATCCAGCGTCGTACATTGACCGCTTCCCTTGATCGGAGAGCACTGAATAAGCCTCCTGG
JMFF007B23+ AATCCAGCGTCGTACATTGACCGCTTCCCTTGATCGGAGAGCACTGAATAAGCCTCCTGG
rJMFF040P20- AATCCAGCGTCGTACATTGACCGCTTCCCTTGATCGGAGAGCACTG
rJMFF007B23- AATCCAGCGTCGTACATTGACCGCTTCCCTTGATCGGAGAGCACTGAATAAGCCTCCTGG
JMSF021J04+ AATCCAGCGTCGTACATTGACCGCTTCCCTTGATCGGAGAGCACTGAATAAGCCTCCTGG
JMFF040P20+ CTGAATAAGCCTCCTGG
                      ____________________________________________________________
consensus AATCCAGCGTCGTACATTGACCGCTTCCCTTGATCGGAGAGCACTGAATAAGCCTCCTGG
 
. : . : . : . : . : . :
JMSF041O07+ ATTTTCTGAAACCGCCGCTTCGCTTCTCCGGCCACCGTCGGGTTCTTGGCCCACCTATCC
JMFF007B23+ ATTTTCTGAAACCGCCGCTTCGCTTCTCCGGCCACCGTCGGGTTCTTGGCCCACCTATCC
rJMFF007B23- ATTTTCTGAAACCGCCGCTTCGCTTCTCCGGCCACCGTCGGGTTCTTGGCCCACCTATCC
JMSF021J04+ ATTTTCTGAAACCGCCGCTTCGCTTCTCCGGCCACCGTCGGGTTCTTGGCCCACCTATCC
JMFF040P20+ ATTTTCTGAAACCGCCGCTTCGCTTCTCCGGCCACCGTCGGGTTCTTGGCCCACCTATCC
                      ____________________________________________________________
consensus ATTTTCTGAAACCGCCGCTTCGCTTCTCCGGCCACCGTCGGGTTCTTGGCCCACCTATCC
 
. : . : . : . : . : . :
JMSF041O07+ GGGTGCCACTTCAGAGCGAGCTTGCGATAAGCTGAGCGAATATCCGAGGAGGAGGCATCG
JMFF007B23+ GGGTGCCACTTCAGAGCGAGCTTGCGATAAGCTGAGCGAATATCCGAGGAGGAGGCATCG
rJMFF007B23- GGGTGCCACTTCAGAGCGAGCTTGCGATAAGCTGAGCGAATATCCGAGGAGGAGGCATCG
JMSF021J04+ GGGTGCCACTTCAGAGCGAGCTTGCGATAAGCTGAGCGAATATCCGAGGAGGAGGCATCG
JMFF040P20+ GGGTGCCACTTCAGAGCGAGCTTGCGATAAGCTGAGCGAATATCCGAGGAGGAGGCATCG
                      ____________________________________________________________
consensus GGGTGCCACTTCAGAGCGAGCTTGCGATAAGCTGAGCGAATATCCGAGGAGGAGGCATCG
 
. : . : . : . : . : . :
JMSF041O07+ CTGCGAATCCCAAGAACGGAGTAGTAGCAAGATCCGCTGGATCCTGCCTCCCGATCCATG
JMFF007B23+ CTGCGAATCCCAAGAACGGAGTAGTAGCAAGATCCGCTGGATCCTGCCTCCCGATCCATG
rJMFF007B23- CTGCGAATCCCAAGAACGGAGTAGTAGCAAGATCCGCTGGATCCTGCCTCCCGATCCATG
JMSF021J04+ CTGCGAATCCCAAGAACGGAGTAGTAGCAAGATCCGCTGGATCCTGCCTCCCGATCCATG
JMFF040P20+ CTGCGAATCCCAAGAACGGAGTAGTAGCAAGATCCGCTGGATCCTGCCTCCCGATCCATG
                      ____________________________________________________________
consensus CTGCGAATCCCAAGAACGGAGTAGTAGCAAGATCCGCTGGATCCTGCCTCCCGATCCATG
 
. : . : . : . : . : . :
JMSF041O07+ CAAGCTTGAATTCTCAACAATGGAGTCTAGTAAAACTCCTGTACCTCTACAGATTTTTGT
JMFF007B23+ CAAGCTTGAATTCTCAACAATGGAGTCTAGTAAAACTCCTGTACCTCTACAGATTTTTGT
rJMFF007B23- CAAGCTTGAATTCTCAACAATGGAGTCTAGTAAAACTCCTGTACCTCTACAGATTTTTGT
JMSF021J04+ CAAGCTTGAATTCTCAACAATGGAGTCTAGTAAAACTCCTGTACCTCTACAGATTTTTGT
JMFF040P20+ CAAGCTTGAATTCTCAACAATGGAGTCTAGTAAAACTCCTGTACCTCTACAGATTTTTGT
                      ____________________________________________________________
consensus CAAGCTTGAATTCTCAACAATGGAGTCTAGTAAAACTCCTGTACCTCTACAGATTTTTGT
 
. : . : . : . : . : . :
JMSF041O07+ ATGCAGGTACAGAGTCTAC
JMFF007B23+ ATGCAGGTACAGAGTCTAC
rJMFF007B23- ATGCAGGTACAGAGTCTAC
JMSF021J04+ ATGCAGGTACAGAGTCTACAAAGGAGAAATGAATTCGATTAAACCATAGATATATATAGA
JMFF040P20+ ATGCAGGTACAGAGTCTACAAAGGAGAAATGAATTCGATTAAACCATAGATATATATAGA
                      ____________________________________________________________
consensus ATGCAGGTACAGAGTCTACAAAGGAGAAATGAATTCGATTAAACCATAGATATATATAGA
 
. : . : . : . : . : . :
JMSF021J04+ GAGAGAGAAATCTATCATCTATCAAATCAAAAAAGTGTTAAAACTGGTGGAAATGTTTAG
JMFF040P20+ GAGAGAGAAATCTATCATCTATCAAATC-AAAAAGTGTTAAAACTGGTGGAAATGTTTAG
                      ____________________________________________________________
consensus GAGAGAGAAATCTATCATCTATCAAATCAAAAAAGTGTTAAAACTGGTGGAAATGTTTAG
 
. : . : . : . : . : . :
JMSF021J04+ AGAGAGAAACGTATGGAGATGATTTTTGGTTCAAATATCTTTGC
JMFF040P20+ AGAGAGAAACGTATGGAGATGATTTTTGGTTCAAATATCTTTGCAAGAAATAGAGAGAAG
                      ____________________________________________________________
consensus AGAGAGAAACGTATGGAGATGATTTTTGGTTCAAATATCTTTGCAAGAAATAGAGAGAAG