Contig 001752:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007B23Sequence502001752 (6)ref|XP_009796960.1|4e-54PREDICTED: dnaJ homolog subfamily B member 6-B-like [Nicotiana sylvestris]777001752 (6)ref|XP_009796960.1|9e-84PREDICTED: dnaJ homolog subfamily B member 6-B-like [Nicotiana sylvestris]
JMFF040P20Sequence512001752 (6)ref|XP_009796960.1|2e-24PREDICTED: dnaJ homolog subfamily B member 6-B-like [Nicotiana sylvestris]702001752 (6)ref|XP_009796960.1|1e-54PREDICTED: dnaJ homolog subfamily B member 6-B-like [Nicotiana sylvestris]
JMSF021J04Sequence677001752 (6)ref|XP_009796960.1|2e-75PREDICTED: dnaJ homolog subfamily B member 6-B-like [Nicotiana sylvestris]653012222 (5)ref|XP_010920046.1|1e-100PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
JMSF041O07Sequence739001752 (6)ref|XP_009796960.1|1e-83PREDICTED: dnaJ homolog subfamily B member 6-B-like [Nicotiana sylvestris]765021556

Alignment

This contig is upended


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rJMFF040P20-                                                         AATCTCTAATGCA
rJMFF007B23-                                   AATTTTTTCCACAAAGTTTCCAAATCTCTAATGCA
                      ____________________________________________________________
consensus                                      AATTTTTTCCACAAAGTTTCCAAATCTCTAATGCA
 
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rJMFF040P20-          ACTGAATTACTTAGAATGTCTTTTTTTTTCCTTGGGAAAAATCTAATCTGCCTCCATCTA
rJMFF007B23-          ACTGAATTACTTAGAATGTCTTTTTTTTTCCTTGGGAAAAATCTAATCTGCCTCCATCTA
                      ____________________________________________________________
consensus             ACTGAATTACTTAGAATGTCTTTTTTTTTCCTTGGGAAAAATCTAATCTGCCTCCATCTA
 
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rJMFF040P20-          AATCAAGTAAATCCACCCTCCATACCAATTAAGTACAACACATGAGGAAAGAATATACAA
rJMFF007B23-          AATCAAGTAAATCCACCCTCCATACCAATTAAGTACAACACATGAGGAAAGATAATACAA
                      ____________________________________________________________
consensus             AATCAAGTAAATCCACCCTCCATACCAATTAAGTACAACACATGAGGAAAGATTATACAA
 
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JMSF041O07+                                           AGTGATAAGAGGTGCCATTGCCATTGAC
rJMFF040P20-          GTGGTGGTGGATAGGCAGAATTTATTACTAACAGTGATAAGAGGTGCCATTGCCATTGAC
rJMFF007B23-          GTGGTGGTGGATAGGCAGAATTTATTACTAACAGTGATAAGAGGTGCCATTGCCATTGAC
                      ____________________________________________________________
consensus             GTGGTGGTGGATAGGCAGAATTTATTACTAACAGTGATAAGAGGTGCCATTGCCATTGAC
 
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JMSF041O07+           ATTAGAAGTACGGTTTTGAGCTGTCCTCAAGCTAGGTCCTGAATCCCGTGGTCTCTTCTT
JMFF007B23+                                                                    CTT
rJMFF040P20-          ATTANAAGTACGGTTTTGAGCTGTCCTCAAGCTAGGTCCTGAATCCCGTGGTCTCTTCTT
rJMFF007B23-          ATTANAAGTACGGTTTTGAGCTGTCCTCAAGCTAGGTCCTGAATCCCGTGGTCTCTTCTT
JMSF021J04+                                     TCAAGCTAGGTCCTGAATCCCGTGGTCTCTTCTT
                      ____________________________________________________________
consensus             ATTAGAAGTACGGTTTTGAGCTGTCCTCAAGCTAGGTCCTGAATCCCGTGGTCTCTTCTT
 
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JMSF041O07+           CACCATTGGATCTTCATTGTCCATCATGTTCGCTAAATCTCGGCCAAACATCTCCAC-AA
JMFF007B23+           CACCATTGGATCTTCATTGTCCATCATGTTCGCTAAATCTCGGCCAAACATCTCCACAAA
rJMFF040P20-          CACCATTGGATCTTCATTGTCCATCATGTTCGCTAAATCTCGGCCAAACATCTCCAC-AA
rJMFF007B23-          CACCATTGGATCTTCATTGTCCATCATGTTCGCTAAATCTCGGCCAAACATCTCCAC-AA
JMSF021J04+           CACCATTGGATCTTCATTGTCCATCATGTTCGCTAAATCTCGGCCAAACATCTCCAC-AA
                      ____________________________________________________________
consensus             CACCATTGGATCTTCATTGTCCATCATGTTCGCTAAATCTCGGCCAAACATCTCCAC-AA
 
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JMSF041O07+           ATGTCCTCTGCAAATCCTCAAGACTTTCCTCCT-CCTGGGTCCCAACATTTTGGTCCATC
JMFF007B23+           ATGTCCTATGCAAATCCTCAAGACTTTCCTCCTCCCTGGGTCCCAACATTTTGGTCCATC
rJMFF040P20-          ATGTCCTCTGCAAATCCTCAAGACTTTCCTCCT-CCTGGGTCCCAACATTTTGGTCCATC
rJMFF007B23-          ATGTCCTATGCAAATCCTCAAGACTTTCCTCCT-CCTGGGTCCCAACATTTTGGTCCATC
JMSF021J04+           ATGTCCTCTGCAAATCCTCAAGACTTTCCTCCT-CCTGGGTCCCAACATTTTGGTCCATC
                      ____________________________________________________________
consensus             ATGTCCTCTGCAAATCCTCAAGACTTTCCTCCT-CCTGGGTCCCAACATTTTGGTCCATC
 
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JMSF041O07+           ATGTTTATCAAATCATGCAGGAAATCACCCATTCCTTCGTCTTCTTCAAGCAGATCAAGG
JMFF007B23+           ATGTTTATCAAATCATGCAGGAAATCACCCATTCCTTCGTCTTCTTCAAGCAGATCAAGG
rJMFF040P20-          ATGTTTATCAAATCATGCAGGAAATCACCCATTCCTTCGTCTTCTTCAAGCAGATCAAGG
rJMFF007B23-          ATGTTTATCAAATCATGCAGGAAATCACCCATTCCTTCGTCTTCTTCAAGCAGATCAAGG
JMSF021J04+           ATGTTTATCAAATCATGCAGGAAATCACCCATTCCTTCGTCTTCTTCAAGCAGATCAAGG
                      ____________________________________________________________
consensus             ATGTTTATCAAATCATGCAGGAAATCACCCATTCCTTCGTCTTCTTCAAGCAGATCAAGG
 
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JMSF041O07+           AATCCAGCGTCGTACATTGACCGCTTCCCTTGATCGGAGAGCACTGAATAAGCCTCCTGG
JMFF007B23+           AATCCAGCGTCGTACATTGACCGCTTCCCTTGATCGGAGAGCACTGAATAAGCCTCCTGG
rJMFF040P20-          AATCCAGCGTCGTACATTGACCGCTTCCCTTGATCGGAGAGCACTG              
rJMFF007B23-          AATCCAGCGTCGTACATTGACCGCTTCCCTTGATCGGAGAGCACTGAATAAGCCTCCTGG
JMSF021J04+           AATCCAGCGTCGTACATTGACCGCTTCCCTTGATCGGAGAGCACTGAATAAGCCTCCTGG
JMFF040P20+                                                      CTGAATAAGCCTCCTGG
                      ____________________________________________________________
consensus             AATCCAGCGTCGTACATTGACCGCTTCCCTTGATCGGAGAGCACTGAATAAGCCTCCTGG
 
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JMSF041O07+           ATTTTCTGAAACCGCCGCTTCGCTTCTCCGGCCACCGTCGGGTTCTTGGCCCACCTATCC
JMFF007B23+           ATTTTCTGAAACCGCCGCTTCGCTTCTCCGGCCACCGTCGGGTTCTTGGCCCACCTATCC
rJMFF007B23-          ATTTTCTGAAACCGCCGCTTCGCTTCTCCGGCCACCGTCGGGTTCTTGGCCCACCTATCC
JMSF021J04+           ATTTTCTGAAACCGCCGCTTCGCTTCTCCGGCCACCGTCGGGTTCTTGGCCCACCTATCC
JMFF040P20+           ATTTTCTGAAACCGCCGCTTCGCTTCTCCGGCCACCGTCGGGTTCTTGGCCCACCTATCC
                      ____________________________________________________________
consensus             ATTTTCTGAAACCGCCGCTTCGCTTCTCCGGCCACCGTCGGGTTCTTGGCCCACCTATCC
 
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JMSF041O07+           GGGTGCCACTTCAGAGCGAGCTTGCGATAAGCTGAGCGAATATCCGAGGAGGAGGCATCG
JMFF007B23+           GGGTGCCACTTCAGAGCGAGCTTGCGATAAGCTGAGCGAATATCCGAGGAGGAGGCATCG
rJMFF007B23-          GGGTGCCACTTCAGAGCGAGCTTGCGATAAGCTGAGCGAATATCCGAGGAGGAGGCATCG
JMSF021J04+           GGGTGCCACTTCAGAGCGAGCTTGCGATAAGCTGAGCGAATATCCGAGGAGGAGGCATCG
JMFF040P20+           GGGTGCCACTTCAGAGCGAGCTTGCGATAAGCTGAGCGAATATCCGAGGAGGAGGCATCG
                      ____________________________________________________________
consensus             GGGTGCCACTTCAGAGCGAGCTTGCGATAAGCTGAGCGAATATCCGAGGAGGAGGCATCG
 
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JMSF041O07+           CTGCGAATCCCAAGAACGGAGTAGTAGCAAGATCCGCTGGATCCTGCCTCCCGATCCATG
JMFF007B23+           CTGCGAATCCCAAGAACGGAGTAGTAGCAAGATCCGCTGGATCCTGCCTCCCGATCCATG
rJMFF007B23-          CTGCGAATCCCAAGAACGGAGTAGTAGCAAGATCCGCTGGATCCTGCCTCCCGATCCATG
JMSF021J04+           CTGCGAATCCCAAGAACGGAGTAGTAGCAAGATCCGCTGGATCCTGCCTCCCGATCCATG
JMFF040P20+           CTGCGAATCCCAAGAACGGAGTAGTAGCAAGATCCGCTGGATCCTGCCTCCCGATCCATG
                      ____________________________________________________________
consensus             CTGCGAATCCCAAGAACGGAGTAGTAGCAAGATCCGCTGGATCCTGCCTCCCGATCCATG
 
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JMSF041O07+           CAAGCTTGAATTCTCAACAATGGAGTCTAGTAAAACTCCTGTACCTCTACAGATTTTTGT
JMFF007B23+           CAAGCTTGAATTCTCAACAATGGAGTCTAGTAAAACTCCTGTACCTCTACAGATTTTTGT
rJMFF007B23-          CAAGCTTGAATTCTCAACAATGGAGTCTAGTAAAACTCCTGTACCTCTACAGATTTTTGT
JMSF021J04+           CAAGCTTGAATTCTCAACAATGGAGTCTAGTAAAACTCCTGTACCTCTACAGATTTTTGT
JMFF040P20+           CAAGCTTGAATTCTCAACAATGGAGTCTAGTAAAACTCCTGTACCTCTACAGATTTTTGT
                      ____________________________________________________________
consensus             CAAGCTTGAATTCTCAACAATGGAGTCTAGTAAAACTCCTGTACCTCTACAGATTTTTGT
 
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JMSF041O07+           ATGCAGGTACAGAGTCTAC                                         
JMFF007B23+           ATGCAGGTACAGAGTCTAC                                         
rJMFF007B23-          ATGCAGGTACAGAGTCTAC                                         
JMSF021J04+           ATGCAGGTACAGAGTCTACAAAGGAGAAATGAATTCGATTAAACCATAGATATATATAGA
JMFF040P20+           ATGCAGGTACAGAGTCTACAAAGGAGAAATGAATTCGATTAAACCATAGATATATATAGA
                      ____________________________________________________________
consensus             ATGCAGGTACAGAGTCTACAAAGGAGAAATGAATTCGATTAAACCATAGATATATATAGA
 
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JMSF021J04+           GAGAGAGAAATCTATCATCTATCAAATCAAAAAAGTGTTAAAACTGGTGGAAATGTTTAG
JMFF040P20+           GAGAGAGAAATCTATCATCTATCAAATC-AAAAAGTGTTAAAACTGGTGGAAATGTTTAG
                      ____________________________________________________________
consensus             GAGAGAGAAATCTATCATCTATCAAATCAAAAAAGTGTTAAAACTGGTGGAAATGTTTAG
 
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JMSF021J04+           AGAGAGAAACGTATGGAGATGATTTTTGGTTCAAATATCTTTGC                
JMFF040P20+           AGAGAGAAACGTATGGAGATGATTTTTGGTTCAAATATCTTTGCAAGAAATAGAGAGAAG
                      ____________________________________________________________
consensus             AGAGAGAAACGTATGGAGATGATTTTTGGTTCAAATATCTTTGCAAGAAATAGAGAGAAG