Contig 001743:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019A17Sequence466001743 (4)gb|ADU56817.1|1e-77MADS-box protein AGL2 subfamily [Coffea arabica] emb|CDP13360.1| unnamed protein118001171 (4)
JMFF022B10Sequence511001743 (4)gb|ADU56817.1|6e-89MADS-box protein AGL2 subfamily [Coffea arabica] emb|CDP13360.1| unnamed protein131001171 (4)
JMFF039J03Sequence484001743 (4)gb|ADU56817.1|4e-65MADS-box protein AGL2 subfamily [Coffea arabica] emb|CDP13360.1| unnamed protein146001171 (4)
JMFF039K15Sequence562001743 (4)gb|ADU56817.1|3e-84MADS-box protein AGL2 subfamily [Coffea arabica] emb|CDP13360.1| unnamed protein148001171 (4)

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF022B10+ ATTGAGTCCTTGTTGATCTGATCTGCTTCAATGACATAT
JMFF039K15+ CTGATCTGCTTCAATGACATAT
                      ____________________________________________________________
consensus ATTGAGTCCTTGTTGATCTGATCTGCTTCAATGACATAT
 
. : . : . : . : . : . :
JMFF022B10+ CAAGCTGCCTCTCAAGAGATTCAAGTTCCTTGCTGTTTAATGGGCCAAGATCTTCACCTA
JMFF019A17+ GCCTCTCAAGAGATTCAAGTTCCTTGCTGTTTAATGGGCCAAGATCTTCACCTA
JMFF039K15+ CAAGCTGCCTCTCAAGAGATTCAAGTTCCTTGCTGTTTAATGGGCCAAGATCTTCACCTA
JMFF039J03+ CCTA
                      ____________________________________________________________
consensus CAAGCTGCCTCTCAAGAGATTCAAGTTCCTTGCTGTTTAATGGGCCAAGATCTTCACCTA
 
. : . : . : . : . : . :
JMFF022B10+ AAAGATTCCTTTGTGATCTCTGTAGTGCTTCATATCTAGCTTTCAGTTTCAGATACTCCT
JMFF019A17+ AAAGATTCCTTTGTGATCTCTGTAGTGCTTCATATCTAGCTTTCAGTTTCAGATACTCCT
JMFF039K15+ AAAGATTCCTTTGTGATCTCTGTAGTGCTTCATATCTAGCTTTCAGTTTCAGATACTCCT
JMFF039J03+ AAAGATTCCTTTGTGATCTCTGTAGTGCTTCATATCTAGCTTTCAGTTTCAGATACTCCT
                      ____________________________________________________________
consensus AAAGATTCCTTTGTGATCTCTGTAGTGCTTCATATCTAGCTTTCAGTTTCAGATACTCCT
 
. : . : . : . : . : . :
JMFF022B10+ GCTGACTACTTATCTCCTGCAGTGCCTCCCTTGTGGATATATTGGGCTCTGGTGCTCCAT
JMFF019A17+ GCTGACTACTTATCTCCTGCAGTGCCTCCCTTGTGGATATATTGGGCTCTGGTGCTCCAT
JMFF039K15+ GCTGACTACTTATCTCCTGCAGTGCCTCCCTTGTGGATATATTGGGCTCTGGTGCTCCAT
JMFF039J03+ GCTGACTACTTATCTCCTGCAGTGCCTCCCTTGTGGATATATTGGGCTCTGGTGCTCCAT
                      ____________________________________________________________
consensus GCTGACTACTTATCTCCTGCAGTGCCTCCCTTGTGGATATATTGGGCTCTGGTGCTCCAT
 
. : . : . : . : . : . :
JMFF022B10+ AGTTGCATTTCTGATACCTCTCCAGTGTCTTGAGCATGCTAGAGCTACTGCAGAACTCAT
JMFF019A17+ AGTTGCATTTCTGATACCTCTCCAGTGTCTTGAGCATGCTAGAGCTACTGCAGAACTCAT
JMFF039K15+ AGTTGCATTTCTGATACCTCTCCAGTGTCTTGAGCATGCTAGAGCTACTGCAGAACTCAT
JMFF039J03+ AGTTGCATTTCTGATACCTCTCCAGTGTCTTGAGCATGCTAGAGCTACTGCAGAACTCAT
                      ____________________________________________________________
consensus AGTTGCATTTCTGATACCTCTCCAGTGTCTTGAGCATGCTAGAGCTACTGCAGAACTCAT
 
. : . : . : . : . : . :
JMFF022B10+ AGAGCTTTCCCCTGTTGGAGAAAATGATGAGAGCAACCTCAGCATCACAAAGAACAGAGA
JMFF019A17+ AGAGCTTTCCCCTGTTGGAGAAAATGATGAGAGCAACCTCAGCATCACAAAGAACAGAGA
JMFF039K15+ AGAGCTTTCCCCTGTTGGAGAAAATGATGAGAGCAACCTCAGCATCACAAAGAACAGAGA
JMFF039J03+ AGAGCTTTCCCCTGTTGGAGAAAATGATGAGAGCAACCTCAGCATCACAAAGAACAGAGA
                      ____________________________________________________________
consensus AGAGCTTTCCCCTGTTGGAGAAAATGATGAGAGCAACCTCAGCATCACAAAGAACAGAGA
 
. : . : . : . : . : . :
JMFF022B10+ GCTCATATGCTTTTTTCAGAAGCCCATTTCTTCGCTTTGCAAAGGTTACTTGTCTGTTGA
JMFF019A17+ GCTCATATGCTTTTTTCAGAAGCCCATTTCTTCGCTTTGCAAAGGTTACTTGTCTGTTGA
JMFF039K15+ GCTCATATGCTTTTTTCAGAAGCCCATTTCTTCGCTTTGCAAAGGTTACTTGTCTGTTGA
JMFF039J03+ GCTCATATGCTTTTTTCAGAAGCCCATTTCTTCGCTTTGCAAAGGTTACTTGTCTGTTGA
                      ____________________________________________________________
consensus GCTCATATGCTTTTTTCAGAAGCCCATTTCTTCGCTTTGCAAAGGTTACTTGTCTGTTGA
 
. : . : . : . : . : . :
JMFF022B10+ TTTTGTTCTCAATTCTCTTCAGTTCAACCCTACCTCTCCCCATCCTCTCTCTCTCTCTCT
JMFF019A17+ TTTTGTTCTCAATTCTCTTCAGTTCAACCCTACCTCTCCCCATCCTCTCTCTCTCTCTCT
JMFF039K15+ TTTTGTTCTCAATTCTCTTCAGTTCAACCCTACCTCTCCCCATCCTCTCTCTCTCTCTCT
JMFF039J03+ TTTTGTTCTCAATTCTCTTCAGTTCAACCCTACCTCTCCCCATCCTCTCTCTCTCTCTCT
                      ____________________________________________________________
consensus TTTTGTTCTCAATTCTCTTCAGTTCAACCCTACCTCTCCCCATCCTCTCTCTCTCTCTCT
 
. : . : . : . : . : . :
JMFF022B10+ CTCTCTCTTTCTCTCTCTCTACTAGCAACCTCTGAAACTCACAAAAGCACAC
JMFF019A17+ CTCTCTCTTTCTCTCTCTCTACTAGCAACCTCTGAAACTCACAAAAGCACAC
JMFF039K15+ CTCTCTCTTTCTCTCTCTCTACTAGCAACCTCTGAAACTCACAAAAGCACACAATCCCTT
JMFF039J03+ CTCTCTCTTTCTCTCTCTCTACTAGCAACCTCTGAAACTCACAAAAGCACACAATCCCTT
                      ____________________________________________________________
consensus CTCTCTCTTTCTCTCTCTCTACTAGCAACCTCTGAAACTCACAAAAGCACACAATCCCTT
 
. : . : . : . : . : . :
JMFF039K15+ TTTCCCTTTCAAAACTTTTCTTTGTATATCACTTCTCTTATATCTAGCTAAGATATACAC
JMFF039J03+ TTTCCCTTTCAAAACTTTTCTTTGTATATCACTTCTCTTATATCTAGCTAAGATATACAC
                      ____________________________________________________________
consensus TTTCCCTTTCAAAACTTTTCTTTGTATATCACTTCTCTTATATCTAGCTAAGATATACAC