Contig 001743:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019A17Sequence466001743 (4)gb|ADU56817.1|1e-77MADS-box protein AGL2 subfamily [Coffea arabica] emb|CDP13360.1| unnamed protein118001171 (4)
JMFF022B10Sequence511001743 (4)gb|ADU56817.1|6e-89MADS-box protein AGL2 subfamily [Coffea arabica] emb|CDP13360.1| unnamed protein131001171 (4)
JMFF039J03Sequence484001743 (4)gb|ADU56817.1|4e-65MADS-box protein AGL2 subfamily [Coffea arabica] emb|CDP13360.1| unnamed protein146001171 (4)
JMFF039K15Sequence562001743 (4)gb|ADU56817.1|3e-84MADS-box protein AGL2 subfamily [Coffea arabica] emb|CDP13360.1| unnamed protein148001171 (4)

Alignment

This contig is upended


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JMFF022B10+                                ATTGAGTCCTTGTTGATCTGATCTGCTTCAATGACATAT
JMFF039K15+                                                 CTGATCTGCTTCAATGACATAT
                      ____________________________________________________________
consensus                                  ATTGAGTCCTTGTTGATCTGATCTGCTTCAATGACATAT
 
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JMFF022B10+           CAAGCTGCCTCTCAAGAGATTCAAGTTCCTTGCTGTTTAATGGGCCAAGATCTTCACCTA
JMFF019A17+                 GCCTCTCAAGAGATTCAAGTTCCTTGCTGTTTAATGGGCCAAGATCTTCACCTA
JMFF039K15+           CAAGCTGCCTCTCAAGAGATTCAAGTTCCTTGCTGTTTAATGGGCCAAGATCTTCACCTA
JMFF039J03+                                                                   CCTA
                      ____________________________________________________________
consensus             CAAGCTGCCTCTCAAGAGATTCAAGTTCCTTGCTGTTTAATGGGCCAAGATCTTCACCTA
 
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JMFF022B10+           AAAGATTCCTTTGTGATCTCTGTAGTGCTTCATATCTAGCTTTCAGTTTCAGATACTCCT
JMFF019A17+           AAAGATTCCTTTGTGATCTCTGTAGTGCTTCATATCTAGCTTTCAGTTTCAGATACTCCT
JMFF039K15+           AAAGATTCCTTTGTGATCTCTGTAGTGCTTCATATCTAGCTTTCAGTTTCAGATACTCCT
JMFF039J03+           AAAGATTCCTTTGTGATCTCTGTAGTGCTTCATATCTAGCTTTCAGTTTCAGATACTCCT
                      ____________________________________________________________
consensus             AAAGATTCCTTTGTGATCTCTGTAGTGCTTCATATCTAGCTTTCAGTTTCAGATACTCCT
 
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JMFF022B10+           GCTGACTACTTATCTCCTGCAGTGCCTCCCTTGTGGATATATTGGGCTCTGGTGCTCCAT
JMFF019A17+           GCTGACTACTTATCTCCTGCAGTGCCTCCCTTGTGGATATATTGGGCTCTGGTGCTCCAT
JMFF039K15+           GCTGACTACTTATCTCCTGCAGTGCCTCCCTTGTGGATATATTGGGCTCTGGTGCTCCAT
JMFF039J03+           GCTGACTACTTATCTCCTGCAGTGCCTCCCTTGTGGATATATTGGGCTCTGGTGCTCCAT
                      ____________________________________________________________
consensus             GCTGACTACTTATCTCCTGCAGTGCCTCCCTTGTGGATATATTGGGCTCTGGTGCTCCAT
 
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JMFF022B10+           AGTTGCATTTCTGATACCTCTCCAGTGTCTTGAGCATGCTAGAGCTACTGCAGAACTCAT
JMFF019A17+           AGTTGCATTTCTGATACCTCTCCAGTGTCTTGAGCATGCTAGAGCTACTGCAGAACTCAT
JMFF039K15+           AGTTGCATTTCTGATACCTCTCCAGTGTCTTGAGCATGCTAGAGCTACTGCAGAACTCAT
JMFF039J03+           AGTTGCATTTCTGATACCTCTCCAGTGTCTTGAGCATGCTAGAGCTACTGCAGAACTCAT
                      ____________________________________________________________
consensus             AGTTGCATTTCTGATACCTCTCCAGTGTCTTGAGCATGCTAGAGCTACTGCAGAACTCAT
 
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JMFF022B10+           AGAGCTTTCCCCTGTTGGAGAAAATGATGAGAGCAACCTCAGCATCACAAAGAACAGAGA
JMFF019A17+           AGAGCTTTCCCCTGTTGGAGAAAATGATGAGAGCAACCTCAGCATCACAAAGAACAGAGA
JMFF039K15+           AGAGCTTTCCCCTGTTGGAGAAAATGATGAGAGCAACCTCAGCATCACAAAGAACAGAGA
JMFF039J03+           AGAGCTTTCCCCTGTTGGAGAAAATGATGAGAGCAACCTCAGCATCACAAAGAACAGAGA
                      ____________________________________________________________
consensus             AGAGCTTTCCCCTGTTGGAGAAAATGATGAGAGCAACCTCAGCATCACAAAGAACAGAGA
 
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JMFF022B10+           GCTCATATGCTTTTTTCAGAAGCCCATTTCTTCGCTTTGCAAAGGTTACTTGTCTGTTGA
JMFF019A17+           GCTCATATGCTTTTTTCAGAAGCCCATTTCTTCGCTTTGCAAAGGTTACTTGTCTGTTGA
JMFF039K15+           GCTCATATGCTTTTTTCAGAAGCCCATTTCTTCGCTTTGCAAAGGTTACTTGTCTGTTGA
JMFF039J03+           GCTCATATGCTTTTTTCAGAAGCCCATTTCTTCGCTTTGCAAAGGTTACTTGTCTGTTGA
                      ____________________________________________________________
consensus             GCTCATATGCTTTTTTCAGAAGCCCATTTCTTCGCTTTGCAAAGGTTACTTGTCTGTTGA
 
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JMFF022B10+           TTTTGTTCTCAATTCTCTTCAGTTCAACCCTACCTCTCCCCATCCTCTCTCTCTCTCTCT
JMFF019A17+           TTTTGTTCTCAATTCTCTTCAGTTCAACCCTACCTCTCCCCATCCTCTCTCTCTCTCTCT
JMFF039K15+           TTTTGTTCTCAATTCTCTTCAGTTCAACCCTACCTCTCCCCATCCTCTCTCTCTCTCTCT
JMFF039J03+           TTTTGTTCTCAATTCTCTTCAGTTCAACCCTACCTCTCCCCATCCTCTCTCTCTCTCTCT
                      ____________________________________________________________
consensus             TTTTGTTCTCAATTCTCTTCAGTTCAACCCTACCTCTCCCCATCCTCTCTCTCTCTCTCT
 
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JMFF022B10+           CTCTCTCTTTCTCTCTCTCTACTAGCAACCTCTGAAACTCACAAAAGCACAC        
JMFF019A17+           CTCTCTCTTTCTCTCTCTCTACTAGCAACCTCTGAAACTCACAAAAGCACAC        
JMFF039K15+           CTCTCTCTTTCTCTCTCTCTACTAGCAACCTCTGAAACTCACAAAAGCACACAATCCCTT
JMFF039J03+           CTCTCTCTTTCTCTCTCTCTACTAGCAACCTCTGAAACTCACAAAAGCACACAATCCCTT
                      ____________________________________________________________
consensus             CTCTCTCTTTCTCTCTCTCTACTAGCAACCTCTGAAACTCACAAAAGCACACAATCCCTT
 
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JMFF039K15+           TTTCCCTTTCAAAACTTTTCTTTGTATATCACTTCTCTTATATCTAGCTAAGATATACAC
JMFF039J03+           TTTCCCTTTCAAAACTTTTCTTTGTATATCACTTCTCTTATATCTAGCTAAGATATACAC
                      ____________________________________________________________
consensus             TTTCCCTTTCAAAACTTTTCTTTGTATATCACTTCTCTTATATCTAGCTAAGATATACAC