| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005C05 | Sequence | 475 | 001737 (10) | ref|XP_006352721.1| | 3e-48 | PREDICTED: photosystem I reaction center subunit IV A, chloroplastic-like [Sola | 598 | 001737 (10) | ref|XP_006352721.1| | 1e-47 | PREDICTED: photosystem I reaction center subunit IV A, chloroplastic-like [Sola |
| JMFF032A08 | Sequence | 506 | 001737 (10) | ref|XP_006352721.1| | 4e-48 | PREDICTED: photosystem I reaction center subunit IV A, chloroplastic-like [Sola | 609 | 016988 | ref|XP_006352721.1| | 1e-47 | PREDICTED: photosystem I reaction center subunit IV A, chloroplastic-like [Sola |
| JMFF037D13 | Sequence | 592 | 001737 (10) | ref|XP_006352721.1| | 1e-47 | PREDICTED: photosystem I reaction center subunit IV A, chloroplastic-like [Sola | |||||
| JMFF049N22 | Sequence | 613 | 001737 (10) | ref|XP_006352721.1| | 1e-47 | PREDICTED: photosystem I reaction center subunit IV A, chloroplastic-like [Sola | 462 | 001737 (10) | ref|WP_039311817.1| | 2e-34 | Photosystem I reaction center subunit IV [Paenibacillus sp. IHB B 3415] gb|KHL9 |
| JMFN003M02 | Sequence | 627 | 001737 (10) | ref|XP_006352721.1| | 2e-47 | PREDICTED: photosystem I reaction center subunit IV A, chloroplastic-like [Sola | |||||
| JMSF003D05 | Sequence | 526 | 001737 (10) | ref|XP_006352721.1| | 8e-44 | PREDICTED: photosystem I reaction center subunit IV A, chloroplastic-like [Sola | |||||
| JMSF040O21 | Sequence | 624 | 001737 (10) | ref|XP_006352721.1| | 2e-47 | PREDICTED: photosystem I reaction center subunit IV A, chloroplastic-like [Sola | 572 | 001737 (10) | ref|XP_006352721.1| | 1e-47 | PREDICTED: photosystem I reaction center subunit IV A, chloroplastic-like [Sola |
This contig is upended
. : . : . : . : . : . :
rJMFF005C05- T
JMFF049N22+ TTCCCACCAATAAGAT
____________________________________________________________
consensus TTCCCACCAATAAGAT
. : . : . : . : . : . :
rJMFF005C05- TATTCTTGATGGAATGATTCAAGTTACTGCAAGAAGAGTATATTATCATACAACCATTGT
JMFF049N22+ TATTCTTGATGGAATGATTCAAGTTACTGCAAGAAGAGTATATTATCATACAACCATTGT
rJMSF040O21- ATGATTCAAGTTACTGCAAGAAGAGTATATTATCATACAACCATTGT
rJMSF003D05- T
JMFF037D13+ ATGGAATGATTCAAGTTACTGCAAGAAGAGTATATTATCATACAACCATTGT
____________________________________________________________
consensus TATTCTTGATGGAATGATTCAAGTTACTGCAAGAAGAGTATATTATCATACAACCATTGT
. : . : . : . : . : . :
rJMFF005C05- CATTTCTGTTCAAGATCTGACAGGTAAACAACAACAGAAAGAAGATGGTCTAATTTTAAG
JMFF049N22+ CATTTCTGTTCAAGATCTGACAGGTAAACAACAACAGAAAGAAGATGGTCTAATTTTAAG
rJMSF040O21- CATTTCTGTTCAAGATCTGACAGGTAAACAACAACAGAAAGAAGATGGTCTAATTTTAAG
JMFF032A08+ CAGAAAGAAGATGGTCTAATTTTAAG
rJMSF003D05- CATTTCTGTTCAAGATCTGACAGGTAAACAACAACAGAAAGAAGATGGTCTAATTTTAAG
JMFF037D13+ CATTTCTGTTCAAGATCTGACAGGTAAACAACAACAGAAAGAAGATGGTCTAATTTTAAG
____________________________________________________________
consensus CATTTCTGTTCAAGATCTGACAGGTAAACAACAACAGAAAGAAGATGGTCTAATTTTAAG
. : . : . : . : . : . :
rJMFF005C05- CCTCATTTCACCTCCTCAACCTCATCCAATGCATAGTTGTTGGTTGATACATTTGCATAG
JMFF049N22+ CCTCATTTCACCTCCTCAACCTCATCCAATGCATAGTTGTTGGTTGATACATTTGCATAG
rJMSF040O21- CCTCATTTCACCTCCTCAACCTCATCCAATGCATAGTTGTTGGTTGATACATTTGCATAG
JMFF032A08+ CCTCATTTCACCTCCTCAACCTCATCCAATGCATAGTTGTTGGTTGATACATTTGCATAG
JMFF005C05+ TCATTTCACCTCCTCAACCTCATCCAATGCATAGTTGTTGGTTGATACATTTGCATAG
rJMSF003D05- CCTCATTTCACCTCCTCAACCTCATCCAATGNATAGTTGTTGGTTGATACATTTGCATAG
JMFN003M02+ TCATCCAATGCATAGTTGTTGGTTGATACATTTGCATAG
JMSF040O21+ TCATCCAATGCATAGTTGTTGGTTGATACATTTGCATAG
rJMFF049N22- TCATCCAATGCATAGTTGTTGGTTGATACATTTGCATAG
JMFF037D13+ CCTCATTTCACCTCCTCAACCTCATCCAATGCATAGTTGTTGGTTGATACATTTGCATAG
____________________________________________________________
consensus CCTCATTTCACCTCCTCAACCTCATCCAATGCATAGTTGTTGGTTGATACATTTGCATAG
. : . : . : . : . : . :
rJMFF005C05- TTCACCTTGTTGAACCTCACCACTACTGGATACCTAGTCTTGGGGTCCTGATCAACTGCC
JMFF049N22+ TTCACCTTGTTGAACCTCACCACTACTGGATACCTAGTCTTGGGGTCCTGATCAACTGCC
rJMSF040O21- TTCACCTTGTTGAACCTCACCACTACTGGATACCTAGTCTTGGGGTCCTGATCAACTGCC
JMFF032A08+ TTCACCTTGTTGAACCTCACCACTACTGGATACCTAGTCTTGGGGTCCTGATCAACTGCC
JMFF005C05+ TTCACCTTGTTGAACCTCACCACTACTGGATACCTAGTCTTGGGGTCCTGATCAACTGCC
rJMSF003D05- TTCACCTTGTTGAACCTCACCACTACTGGATACCTAGTCTTGGGGTCCTGATCAACTGCC
JMFN003M02+ TTCACCTTGTTGAACCTCACCACTACTGGATACCTAGTCTTGGGGTCCTGATCAACTGCC
JMSF040O21+ TTCACCTTGTTGAACCTCACCACTACTGGATACCTAGTCTTGGGGTCCTGATCAACTGCC
rJMFF049N22- TTCACCTTGTTGAACCTCACCACTACTGGATACCTAGTCTTGGGGTCCTGATCAACTGCC
JMFF037D13+ TTCACCTTGTTGAACCTCACCACTACTGGATACCTAGTCTTGGGGTCCTGATCAACTGCC
____________________________________________________________
consensus TTCACCTTGTTGAACCTCACCACTACTGGATACCTAGTCTTGGGGTCCTGATCAACTGCC
. : . : . : . : . : . :
rJMFF005C05- ACAACTGATCCAACTCCCTTGAACCAGTATGACTCCTTCCTTAGAATCCTCACCTTGGCT
JMFF049N22+ ACAACTGATCCAACTCCCTTGAACCAGTATGACTCCTTCCTTAGAATCCTCACCTTGGCT
rJMSF040O21- ACAACTGATCCAACTCCCTTGAACCAGTATGACTCCTTCCTTAGAATCCTCACCTTGGCT
JMFF032A08+ ACAACTGATCCAACTCCCTTGAACCAGTATGACTCCTTCCTTAGAATCCTCACCTTGGCT
JMFF005C05+ ACAACTGATCCAACTCCCTTGAACCAGTATGACTCCTTCCTTAGAATCCTCACCTTGGCT
rJMSF003D05- ACAACTGATCCAACTCCCTTGAACCAGTATGACTCCTTCCTTANAATCCTCACCTTGGCT
JMFN003M02+ ACAACTGATCCAACTCCCTTGAACCAGTATGACTCCTTCCTTAGAATCCTCACCTTGGCT
JMSF040O21+ ACAACTGATCCAACTCCCTTGAACCAGTATGACTCCTTCCTTAGAATCCTCACCTTGGCT
rJMFF049N22- ACAACTGATCCAACTCCCTTGAACCAGTATGACTCCTTCCTTAGAATCCTCACCTTGGCT
JMFF037D13+ ACAACTGATCCAACTCCCTTGAACCAGTATGACTCCTTCCTTAGAATCCTCACCTTGGCT
____________________________________________________________
consensus ACAACTGATCCAACTCCCTTGAACCAGTATGACTCCTTCCTTAGAATCCTCACCTTGGCT
. : . : . : . : . : . :
rJMFF005C05- CCTCTCTTGGGTCCAATGGGGGGTGGCTTGGCAGCTTTAGCCGGAGGAGCTTCAGCATCT
JMFF049N22+ CCTCTCTTGGGTCCAATGGGGGGTGGCTTGGCAGCTTTAGCCGGAGGAGCTTCAGCATCT
rJMSF040O21- CCTCTCTTGGGTCCAATGGGGGGTGGCTTGGCAGCTTTAGCCGGAGGAGCTTCAGCATCT
JMFF032A08+ CCTCTCTTGGGTCCAATGGGGGGTGGCTTGGCAGCTTTAGCCGGAGGAGCTTCAGCATCT
JMFF005C05+ CCTCTCTTGGGTCCAATGGGGGGTGGCTTGGCAGCTTTAGCCGGAGGAGCTTCAGCATCT
rJMSF003D05- CCTCTCTTGGGTCCAATGGGGNGTGGCTTGACAGCTTTAGCCGGAGGAGCTTCAGCATCT
JMFN003M02+ CCTCTCTTGGGTCCAATGGGGGGTGGCTTGGCAGCTTTAGCCGGAGGAGCTTCAGCATCT
JMSF040O21+ CCTCTCTTGGGTCCAATGGGGGGTGGCTTGGCAGCTTTAGCCGGAGGAGCTTCAGCATCT
rJMFF049N22- CCTCTCTTGGGTCCAATGGGGGGTGGCTTGGCAGCTTTAGCCGGAGGAGCTTCAGCATCT
JMFF037D13+ CCTCTCTTGGGTCCAATGGGGGGTGGCTTGGCAGCTTTAGCCGGAGGAGCTTCAGCATCT
____________________________________________________________
consensus CCTCTCTTGGGTCCAATGGGGGGTGGCTTGGCAGCTTTAGCCGGAGGAGCTTCAGCATCT
. : . : . : . : . : . :
rJMFF005C05- GCGGCTGCCGGTGGTGGCGGCGCAGCCTCCTCGGCGGCTGCCCTTACGACAAGCCTGCAG
JMFF049N22+ GCGGCTGCCGGTGGTGGCGGCGCAGCCTCCTCGGCGGCTGCCCTTACGACAAGCCTGCAG
rJMSF040O21- GCGGCTGCCGGTGGTGGCGGCGCAGCCTCCTCGGCGGCTGCCCTTACGACAAGCCTGCAG
JMFF032A08+ GCGGCTGCCGGTGGTGGCGGCGCAGCCTCCTCGGCGGCTGCCCTTACGACAAGCCTGCAG
JMFF005C05+ GCGGCTGCCGGTGGTGGCGGCGCAGCCTCCTCGGCGGCTGCCCTTACGACAAGCCTGCAG
rJMSF003D05- GCGGCTGCCGGTGGTGGCGGCGCANCCTCCTCGGCGGCTGCCCTTACNACAAGCCTGCAG
JMFN003M02+ GCGGCTGCCGGTGGTGGCGGCGCAGCCTCCTCGGCGGCTGCCCTTACGACAAGCCTGCAG
JMSF040O21+ GCGGCTGCCGGTGGTGGCGGCGCAGCCTCCTCGGCGGCTGCCCTTACGACAAGCCTGCAG
rJMFF049N22- GCGGCTGCCGGTGGTGGCGGCGCANCCTCCTCGGCGGCTGCCCTTACGACAAGCCTGCAG
JMFF037D13+ GCGGCTGCCGGTGGTGGCGGCGCAGCCTCCTCGGCGGCTGCCCTTACGACAAGCCTGCAG
____________________________________________________________
consensus GCGGCTGCCGGTGGTGGCGGCGCAGCCTCCTCGGCGGCTGCCCTTACGACAAGCCTGCAG
. : . : . : . : . : . :
rJMFF005C05- CGGGCGGGGGTGGTGGCATTCTTGGAAGGGAACATTACGATGTTGATCCGAGGTGTGGTG
JMFF049N22+ CGGGCGGGGGTGGTGGCATTCTTGGAAGGGAACATTACGATGTTGATCCGAGGTGTGGTG
rJMSF040O21- CGGGCGGGGGTGGTGGCATTCTTGGAAGGGAACATTACGATGTTGATCCGAGGTGTGGTG
JMFF032A08+ CGGGCGGGGGTGGTGGCATTCTTGGAAGGGAACATTACGATGTTGATCCGAGGTGTGGTG
JMFF005C05+ CGGGCGGGGGTGGTGGCATTCTTGGAAGGGAACATTACGATGTTGATCCGAGGTGTGGTG
rJMSF003D05- CGGGCGGGGGTGGTGNCATTCTTGGAAGGGAACATTACGATGTTGATCCGAGGTGTGGTG
JMFN003M02+ CGGGCGGGGGTGGTGGCATTCTTGGAAGGGAACATTACGATGTTGATCCGAGGTGTGGTG
JMSF040O21+ CGGGCGGGGGTGGTGGCATTCTTGGAAGGGAACATTACGATGTTGATCCGAGGTGTGGTG
rJMFF049N22- CGGGCGGGGGTGG
JMFF037D13+ CGGGCGGGGGTGGTGGCATTCTTGGAAGGGAACATTACGATGTTGATCCGAGGTGTGGTG
____________________________________________________________
consensus CGGGCGGGGGTGGTGGCATTCTTGGAAGGGAACATTACGATGTTGATCCGAGGTGTGGTG
. : . : . : . : . : . :
rJMFF005C05- GTGTTTGAGGCCACCATTTTAGCAGTCAGCAGAAACTCAGACGCGGCTGATGCCATGCCG
JMFF049N22+ GTGTTTGAGGCCACCATTTTAGCAGTCAGCAGAAACTCAGACGCGGCTGATGCCATGCCG
rJMSF040O21- GTGTTTGAGGCCACCATTTTAGCAGTCAGCAGAAACTCAGACGCGGCTGATGCCATGCCG
JMFF032A08+ GTGTTTGAGGCCACCATTTTAGCAGTCAGCAGAAACTCAGACGCGGCTGATGCCATGCCG
JMFF005C05+ GTGTTTGAGGCCACCATTTTAGCAGTCAGCAGAAACTCAGACGCGGCTGATGCCATGCCG
rJMSF003D05- GTGTTTGAGGCCACCATTTTANCANTCANCAGAAACTCAGACNCGGCTGATGCCATGCCG
JMFN003M02+ GTGTTTGAGGCCACCATTTTAGCAGTCAGCAGAAACTCAGACGCGGCTGATGCCATGCCG
JMSF040O21+ GTGTTTGAGGCCACCATTTTAGCAGTCAGCAGAAACTCAGACGCGGCTGATGCCATGCCG
JMFF037D13+ GTGTTTGAGGCCACCATTTTAGCAGTCAGCAGAAACTCAGACGCGGCTGATGCCATGCCG
____________________________________________________________
consensus GTGTTTGAGGCCACCATTTTAGCAGTCAGCAGAAACTCAGACGCGGCTGATGCCATGCCG
. : . : . : . : . : . :
rJMFF005C05- CAGCTTGCCATGGTTTGTCTCAACTGCTGCAAAGATGCGAATCCGAGTGCGGAAAAT
JMFF049N22+ CAGCTTGCCATGGTTTGTCTCAACTGCTGCAAAGATGCGAATCCGAGTGCGGAAAAT
rJMSF040O21- CAGCTTGCCATGGTTTGTCTCAACTGCTGCAAAGATGCGAATCC
JMFF032A08+ CAGCTTGCCATGGTTTGTCTCAACTGCTGCAAAGATGCGAATCCGAGTGCGGAAAAT
JMFF005C05+ CAGCTTGCCATGGTTTGTCTCAACTGCTGCAAAGATGCGAATCCGAGTGCGGAAAAT
rJMSF003D05- CANCTTGCCATGGTTT
JMFN003M02+ CAGCTTGCCATGGTTTGTCTCAACTGCTGCAAAGATGCGAATCCGA
JMSF040O21+ CAGCTTGCCATGGTTTGTCTCAACTGCTGCAAAGATGCGAATCC
JMFF037D13+ CAGCTTGCCATGGTTTGTCTCAACTGCTGCAAAGATGCGAATCCGAGTGCGGAAAATACT
____________________________________________________________
consensus CAGCTTGCCATGGTTTGTCTCAACTGCTGCAAAGATGCGAATCCGAGTGCGGAAAATACT