Contig 001732:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF036E02Sequence567001732 (2)ref|XP_002321279.1|1e-43membrane family protein [Populus trichocarpa] gb|EEE99594.1| membrane family pro641002638 (2)ref|XP_009605725.1|4e-40PREDICTED: thiamine-repressible mitochondrial transport protein THI74 isoform X
JMSF002N03Sequence353001732 (2)ref|XP_006356765.1|2e-11PREDICTED: thiamine-repressible mitochondrial transport protein THI74-like isof719002638 (2)ref|XP_009785282.1|1e-81PREDICTED: thiamine-repressible mitochondrial transport protein THI74 [Nicotian

Alignment

This contig is upended


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JMFF036E02+                                            TGGACTTGAAGCATCAGCTTGGAAATG
                      ____________________________________________________________
consensus                                              TGGACTTGAAGCATCAGCTTGGAAATG
 
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JMFF036E02+           GAAACCCGAGTTATCATCCCCTAGAAGAATAACCTCCTCAGATTCTCTCAATTCTTGCAA
                      ____________________________________________________________
consensus             GAAACCCGAGTTATCATCCCCTAGAAGAATAACCTCCTCAGATTCTCTCAATTCTTGCAA
 
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JMFF036E02+           ACTACAACTCTCTCTCTTTCGCCAAAACAAAACACTCCCATACTTATCCTCTAAATACCG
                      ____________________________________________________________
consensus             ACTACAACTCTCTCTCTTTCGCCAAAACAAAACACTCCCATACTTATCCTCTAAATACCG
 
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JMFF036E02+           TCCAATTTCAACTAGGGGAATATATACCACGAATAATGAATTACAAATGTATGTTATGAG
                      ____________________________________________________________
consensus             TCCAATTTCAACTAGGGGAATATATACCACGAATAATGAATTACAAATGTATGTTATGAG
 
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JMSF002N03+                GGGAAACGCCCGCATCTACAACTGACTGAACAACAAAACTAGCGGCAATCCATAT
JMFF036E02+           AAATGGGGAAACGCCCGCATCTACAACTGACTGAACAACAAAACTAGCGGCAATCCATAT
                      ____________________________________________________________
consensus             AAATGGGGAAACGCCCGCATCTACAACTGACTGAACAACAAAACTAGCGGCAATCCATAT
 
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JMSF002N03+           GGATGCAACTAAAAATATGTATACCAAACCTAAAACCCATCTCCAATTTTGTTCTTTCAT
JMFF036E02+           GGATGCAACTAAAAATATGTATACCAAACCTAAAACCCATCTCCAATTTTGTTCTTTCAT
                      ____________________________________________________________
consensus             GGATGCAACTAAAAATATGTATACCAAACCTAAAACCCATCTCCAATTTTGTTCTTTCAT
 
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JMSF002N03+           TCCTCTATGGTCAAATTTTTCAACTCAATGCATTTTTAAACAACCAGTTAAGAAGGAAAG
JMFF036E02+           TCCTCTATGGTCAAATTTTTCAACTCAATGCATTTTTAAACAACCAGTTAAGAAGGAAAG
                      ____________________________________________________________
consensus             TCCTCTATGGTCAAATTTTTCAACTCAATGCATTTTTAAACAACCAGTTAAGAAGGAAAG
 
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JMSF002N03+           TTTGAATGACAGTAGCAAATATTGTGGAAACAACGTACAAGAAGATTACGAGAAAGAGCG
JMFF036E02+           TTTGAATGACAGTAGCAAATATTGTGGAAACAACGTACAAGAAGATTACGAGAAAGAGCG
                      ____________________________________________________________
consensus             TTTGAATGACAGTAGCAAATATTGTGGAAACAACGTACAAGAAGATTACGAGAAAGAGCG
 
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JMSF002N03+           AACCGAAGCGGAGAATCTAATCCACGCGGTAGCGCTGAGGGGAATCTGGAGATTTGGAGG
JMFF036E02+           AACCGAAGCGGAGAATCTAATCCACGCGGTAGCGCTGAGGGGAATCTGGAGATTTGGAGG
                      ____________________________________________________________
consensus             AACCGAAGCGGAGAATCTAATCCACGCGGTAGCGCTGAGGGGAATCTGGAGATTTGGAGG
 
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JMSF002N03+           TCCGAAACGGGTTTCTCGCAGAGAAGAAGGAGACGGGGATCCTGGAAGACTGGATCT   
JMFF036E02+           TCCGAAACGGGTTTCTCGCAGAGAAGAAGGAGACGGGGATCCTGGAAGACTGGATCTGTC
                      ____________________________________________________________
consensus             TCCGAAACGGGTTTCTCGCAGAGAAGAAGGAGACGGGGATCCTGGAAGACTGGATCTGTC