Contig 001719:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF033D17Sequence577001719 (2)ref|XP_004237386.1|3e-84PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Solanum lycopersicum]755011110 (2)ref|XP_006355336.1|4e-127PREDICTED: ubiquitin carboxyl-terminal hydrolase 3-like [Solanum tuberosum]
JMSF046C14Sequence704001719 (2)ref|XP_009792778.1|5e-116PREDICTED: ubiquitin carboxyl-terminal hydrolase 3 [Nicotiana sylvestris]768011110 (2)ref|XP_006355336.1|1e-135PREDICTED: ubiquitin carboxyl-terminal hydrolase 3-like [Solanum tuberosum]

Alignment

This contig is upended


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JMSF046C14+                                                                   CCTT
                      ____________________________________________________________
consensus                                                                     CCTT
 
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JMSF046C14+           GTTTCATTCGTCAATATACCCTGGAAGTTTTTGTGAACCCAGGTGACAAGTGGCTTCTTT
                      ____________________________________________________________
consensus             GTTTCATTCGTCAATATACCCTGGAAGTTTTTGTGAACCCAGGTGACAAGTGGCTTCTTT
 
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JMSF046C14+           TGAGCACCATTGACAAGGACTGTCTTTGGTCCATTTGCAATCTTTTCGGTTGGCGATGAA
                      ____________________________________________________________
consensus             TGAGCACCATTGACAAGGACTGTCTTTGGTCCATTTGCAATCTTTTCGGTTGGCGATGAA
 
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JMSF046C14+           CTTTCTTGATCACCTTTCACAGCATTTGACTCTTTCTCCAGTATGTCAACAAGTTCATTC
JMFF033D17+                                  ATTTGACTCTTTCTCCAGTATGTCAACAAGTTCATTC
                      ____________________________________________________________
consensus             CTTTCTTGATCACCTTTCACAGCATTTGACTCTTTCTCCAGTATGTCAACAAGTTCATTC
 
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JMSF046C14+           AGCAAATAGTTCAGGAATTCATGAGCATCCTGGTGCATATAACTGCGGAAAATTTCATTC
JMFF033D17+           AGCAAATAGTTCAGGAATTCATGAGCATCCTGGTGCATATAACTGCGGAAAATTTCATTC
                      ____________________________________________________________
consensus             AGCAAATAGTTCAGGAATTCATGAGCATCCTGGTGCATATAACTGCGGAAAATTTCATTC
 
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JMSF046C14+           TGCTTCTTCAGCTTCTGTACAAAGCGTTTTGGACCAACAACACCTGTTTTTTTCTTTTGC
JMFF033D17+           TGCTTCTTCAGCTTCTGTACAAAGCGTTTTGGACCAACAACACCTGTTTTTTTCTTTTGC
                      ____________________________________________________________
consensus             TGCTTCTTCAGCTTCTGTACAAAGCGTTTTGGACCAACAACACCTGTTTTTTTCTTTTGC
 
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JMSF046C14+           GAGCTAATCTGCATAAATAGGTCCGCCAAGCATGTCAAAAGATTTTCGTCAGCATCAGCA
JMFF033D17+           GAGCTAATCTGCATAAATAGGTCCGCCAAGCATGTCAAAAGATTTTCGTCAGCATCAGCA
                      ____________________________________________________________
consensus             GAGCTAATCTGCATAAATAGGTCCGCCAAGCATGTCAAAAGATTTTCGTCAGCATCAGCA
 
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JMSF046C14+           GGGGTTTTGTTATTAGAATAGTATTCCAAAAGCTGCTCCCTAAATGGAACACAGAAATAG
JMFF033D17+           GGGGTTTTGTTATTAGAATAGTATTCCAAAAGCTGCTCCCTAAATGGAACACAGAAATAG
                      ____________________________________________________________
consensus             GGGGTTTTGTTATTAGAATAGTATTCCAAAAGCTGCTCCCTAAATGGAACACAGAAATAG
 
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JMSF046C14+           AGAGCCTGTAGCACGCTGTTGCAGTAGCAAGTATTCCCGAAATTCTCCAGACCGAAATAT
JMFF033D17+           AGAGCCTGTAGCACGCTGTTGCAGTAGCAAGTATTCCCGAAATTCTCCAGACCGAAATAT
                      ____________________________________________________________
consensus             AGAGCCTGTAGCACGCTGTTGCAGTAGCAAGTATTCCCGAAATTCTCCAGACCGAAATAT
 
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JMSF046C14+           CTCTCGCCTTCTGGGAACTGGTCTCCAAGCGCCTTTTCGAGTTTCGAGCCGGCCGCCACC
JMFF033D17+           CTCTCGCCTTCTGGGAACTGGTCTCCAAGCGCCTTTTCGAGTTTCGAGCCGGCCGCCCCC
                      ____________________________________________________________
consensus             CTCTCGCCTTCTGGGAACTGGTCTCCAAGCGCCTTTTCGAGTTTCGAGCCGGCCGCCCCC
 
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JMSF046C14+           ATCTCAATTCATCCACGCCTCAATATCGCTATATATATGTTCGCGCGCGCGTATAGTATG
JMFF033D17+           ATCTCAATTCATCCACGCCTCAATATCGCTATATATATGTTCGCGCGCGCGTATAGTATG
                      ____________________________________________________________
consensus             ATCTCAATTCATCCACGCCTCAATATCGCTATATATATGTTCGCGCGCGCGTATAGTATG
 
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JMSF046C14+           TATCGGCTAGCGATTTTGCAGTGCTTAGAGGATTCCTATACCAGGAAGTTCATAGATACT
JMFF033D17+           TATCGGCTAGCGATTTTGCAGTGCTTAGAGGATTCCTATACCAGGAAGTTCATAGATACT
                      ____________________________________________________________
consensus             TATCGGCTAGCGATTTTGCAGTGCTTAGAGGATTCCTATACCAGGAAGTTCATAGATACT
 
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JMSF046C14+           GAGAAGTGAATCGAAAAGGTGAAACGAGGCTTCATCGAC                     
JMFF033D17+           GAGAAGTGAATCGAAAAGGTGAAACGAGGCTTCATCGACGGAGAAGAAGACTGAGAATAC
                      ____________________________________________________________
consensus             GAGAAGTGAATCGAAAAGGTGAAACGAGGCTTCATCGACGGAGAAGAAGACTGAGAATAC