clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF031A05 | Sequence | 545 | 001715 (4) | ref|XP_009626180.1| | 2e-08 | PREDICTED: uncharacterized protein At1g04910-like [Nicotiana tomentosiformis] | 728 | 014872 | ref|XP_010327510.1| | 9e-62 | PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Solanum lycopersi |
JMFF032B14 | Sequence | 519 | 001715 (4) | ref|XP_009626180.1| | 3e-08 | PREDICTED: uncharacterized protein At1g04910-like [Nicotiana tomentosiformis] | 691 | 005791 (2) | ref|XP_010327510.1| | 9e-78 | PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Solanum lycopersi |
JMFF041B24 | Sequence | 651 | 001715 (4) | ref|XP_009626180.1| | 1e-25 | PREDICTED: uncharacterized protein At1g04910-like [Nicotiana tomentosiformis] | |||||
JMSF042F17 | Sequence | 734 | 001715 (4) | ref|XP_009626180.1| | 9e-51 | PREDICTED: uncharacterized protein At1g04910-like [Nicotiana tomentosiformis] | 742 | 005791 (2) | ref|XP_010327510.1| | 1e-71 | PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Solanum lycopersi |
This contig is upended
. : . : . : . : . : . :
JMSF042F17+ GAACAACCAGAGTAGCACCAAGAATCCTTGCAATCACCACAGCATCCACAATCTGATTCC
____________________________________________________________
consensus GAACAACCAGAGTAGCACCAAGAATCCTTGCAATCACCACAGCATCCACAATCTGATTCC
. : . : . : . : . : . :
JMSF042F17+ TCTGTTGATTCATTCCACCAGAAACCACCACCATCAGATACTTGCTCCTCTCTTTCACAA
____________________________________________________________
consensus TCTGTTGATTCATTCCACCAGAAACCACCACCATCAGATACTTGCTCCTCTCTTTCACAA
. : . : . : . : . : . :
JMSF042F17+ TATTCCCACTATCTTTCCTATACTGCTCACTGAAATCCAAACACGCCCTATACCCCAGCC
JMFF041B24+ TATCTTTCCTATACTGCTCACTGAAATCCAAACACGCCCTATACCCCAGCC
____________________________________________________________
consensus TATTCCCACTATCTTTCCTATACTGCTCACTGAAATCCAAACACGCCCTATACCCCAGCC
. : . : . : . : . : . :
JMSF042F17+ CATCTGGCTGCTTCCAAAACTCGCTCTTCTCGTTCACCTCTTCCCCATCCCCACCACTCC
JMFF041B24+ CATCTGGCTGCTTCCAAAACTCGCTCTTCTCGTTCACCTCTTCCCCATCCCCACCACTCC
JMFF031A05+ CACTCC
____________________________________________________________
consensus CATCTGGCTGCTTCCAAAACTCGCTCTTCTCGTTCACCTCTTCCCCATCCCCACCACTCC
. : . : . : . : . : . :
JMSF042F17+ CCAGCGCAGAACCCATATACCCATTGGAAAAATCGGCCTTTTCTTGGAGACCCAAACACG
JMFF041B24+ CCAGCGCAGAACCCATATACCCATTGGAAAAATCGGCCTTTTCTTGGAGACCCAAACACG
JMFF031A05+ CCAGCGCAGAACCCATATACCCATTGGAAAAATCGGCCTTTTCTTGGAGACCCAAACACG
JMFF032B14+ CCATTGGAAAAATCGGCCTTTTCTTGGAGACCCAAACACG
____________________________________________________________
consensus CCAGCGCAGAACCCATATACCCATTGGAAAAATCGGCCTTTTCTTGGAGACCCAAACACG
. : . : . : . : . : . :
JMSF042F17+ GGTATGGGGAGAAAGGCAACAAGGTGTCGAAATTGAACCACAGCTTTAGAGTTCCAAAGA
JMFF041B24+ GGTATGGGGAGAAAGGCAACAAGGTGTCGAAATTGAACCACAGCTTTAGAGTTCCAAAGA
JMFF031A05+ GGTATGGGGAGAAAGGCAACAAGGTGTCGAAATTGAACCACAGCTTTAGAGTTCCAAAGA
JMFF032B14+ GGTATGGGGAGAAAGGCAACAAGGTGTCGAAATTGAACCACAGCTTTAGAGTTCCAAAGA
____________________________________________________________
consensus GGTATGGGGAGAAAGGCAACAAGGTGTCGAAATTGAACCACAGCTTTAGAGTTCCAAAGA
. : . : . : . : . : . :
JMSF042F17+ GACCAAATAGGAGCAGAAACAAAACCCAAAACCTGGGATTTCTCAGCAAAAATCTCAGCT
JMFF041B24+ GACCAAATAGGAGCAGAAACAAAACCCAAAACCTGGGATTTCTCAGCAAAAATCTCAGCT
JMFF031A05+ GACCAAATAGGAGCAGAAACAAAACCCAAAACCTGGGATTTCTCAGCAAAAATCTCAGCT
JMFF032B14+ GACCAAATAGGAGCAGAAACAAAACCCAAAACCTGGGATTTCTCAGCAAAAATCTCAGCT
____________________________________________________________
consensus GACCAAATAGGAGCAGAAACAAAACCCAAAACCTGGGATTTCTCAGCAAAAATCTCAGCT
. : . : . : . : . : . :
JMSF042F17+ TTGTAGCAAATGAGGAGGAGGGGCTCTGCCTCTTCTTGGGGGAGAGAAGCACCAGGGCTT
JMFF041B24+ TTGTAGCAAATGAGGAGGAGGGGCTCTGCCTCTTCTTGGGGGAGAGAAGCACCAGGGCTT
JMFF031A05+ TTGTAGCAAATGAGGAGGAGGGGCTCTGCCTCTTCTTGGGGGAGAGAAGCACCAGGGCTT
JMFF032B14+ TTGTAGCAAATGAGGAGGAGGGGCTCTGCCTCTTCTTGGGGGAGAGAAGCACCAGGGCTT
____________________________________________________________
consensus TTGTAGCAAATGAGGAGGAGGGGCTCTGCCTCTTCTTGGGGGAGAGAAGCACCAGGGCTT
. : . : . : . : . : . :
JMSF042F17+ GGAGTGGAGCGTTGACCATATCCGACGCCACTGAAATGTAGGATTGTTGCTTCTTCTTTG
JMFF041B24+ GGAGTGGAGCGTTGACCATATCCGACGCCACTGAAATGTAGGATTGTTGCTTCTTCTTTG
JMFF031A05+ GGAGTGGAGCGTTGACCATATCCGACGCCACTGAAATGTAGGATTGTTGCTTCTTCTTTG
JMFF032B14+ GGAGTGGAGCGTTGACCATATCCGACGCCACTGAAATGTAGGATTGTTGCTTCTTCTTTG
____________________________________________________________
consensus GGAGTGGAGCGTTGACCATATCCGACGCCACTGAAATGTAGGATTGTTGCTTCTTCTTTG
. : . : . : . : . : . :
JMSF042F17+ ACACGGCCATCTTTATGAAGAAGATGAACAAAACAGGGATTCTTGATTTTAAAGACTGGA
JMFF041B24+ ACACGGCCATCTTTATGAAGAAGATGAACAAAACAGGGATTCTTGATTTTAAAGACTGGA
JMFF031A05+ ACACGGCCATCTTTATGAAGAAGATGAACAAAACAGGGATTCTTGATTTTAAAGACTGGA
JMFF032B14+ ACACGGCCATCTTTATGAAGAAGATGAACAAAACAGGGATTCTTGATTTTAAAGACTGGA
____________________________________________________________
consensus ACACGGCCATCTTTATGAAGAAGATGAACAAAACAGGGATTCTTGATTTTAAAGACTGGA
. : . : . : . : . : . :
JMSF042F17+ GCTTTCTGCTGTAAATCGAGATTTTTCTTGCTTTTGAGGCTTGTGGGATTGCTTGAAGTG
JMFF041B24+ GCTTTCTGCTGTAAATCGAGATTTTTCTTGCTTTTGAGGCTTGTGGGATTGCTTGAAGTG
JMFF031A05+ GCTTTCTGCTGTAAATCGAGATTTTTCTTGCTTTTGAGGCTTGTGGGATTGCTTGAAGTG
JMFF032B14+ GCTTTCTGCTGTAAATCGAGATTTTTCTTGCTTTTGAGGCTTGTGGGATTGCTTGAAGTG
____________________________________________________________
consensus GCTTTCTGCTGTAAATCGAGATTTTTCTTGCTTTTGAGGCTTGTGGGATTGCTTGAAGTG
. : . : . : . : . : . :
JMSF042F17+ GGAGAAAATGGTGGAGAGATAGAAGGGAGGAGACGCGAAATACGATGATGAATCCGCGTT
JMFF041B24+ GGAGAAAATGGTGGAGAGATAGAAGGGAGGAGACGCGAAATACGATGATGAATCCGCGTT
JMFF031A05+ GGAGAAAATGGTGGAGAGATAGAAGGGAGGAGACGCGAAATACGATGATGAATCCGCGTT
JMFF032B14+ GGAGAAAATGGTGGAGAGATAGAAGGGAGGAGACGCGAAATACGATGATGAATCCGCGTT
____________________________________________________________
consensus GGAGAAAATGGTGGAGAGATAGAAGGGAGGAGACGCGAAATACGATGATGAATCCGCGTT
. : . : . : . : . : . :
JMSF042F17+ GGGTGTTGGAGT
JMFF041B24+ GGGTGTTGGAGTCAGAAATTGTGTGTGTGAAGAGGCCAATGAATGTTCTTCTTCTTCTTT
JMFF031A05+ GGGTGTTGGAGTCAGAAATTGTGTGTGTGAAGAGG-CAATGAATGTTCTTCTTCTTCTTT
JMFF032B14+ GGGTGTTGGAGTCAGAAATTGTGTGTGTGAAGAGG-CAATGAATGTTCTTCTTCTTCTTT
____________________________________________________________
consensus GGGTGTTGGAGTCAGAAATTGTGTGTGTGAAGAGG-CAATGAATGTTCTTCTTCTTCTTT