| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF003M13 | Sequence | 523 | 001713 (12) | ref|XP_009615859.1| | 1e-81 | PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [ | 763 | 008125 (9) | ref|XP_009122464.1| | 6e-75 | PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Brass |
| JMFF007M12 | Sequence | 619 | 001713 (12) | ref|XP_009615859.1| | 1e-71 | PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [ | 800 | 008125 (9) | ref|XP_009131078.1| | 1e-108 | PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [ |
| JMFF012H11 | Sequence | 557 | 001713 (12) | ref|XP_009615859.1| | 3e-91 | PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [ | 785 | 008125 (9) | ref|XP_009131078.1| | 6e-111 | PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [ |
| JMFF013H01 | Sequence | 582 | 001713 (12) | ref|XP_009615859.1| | 1e-97 | PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [ | 287 | 008125 (9) | gb|AFK41633.1| | 6e-53 | unknown [Medicago truncatula] |
| JMFF021D04 | Sequence | 371 | 001713 (12) | ref|XP_009615859.1| | 1e-35 | PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [ | |||||
| JMFF022O19 | Sequence | 521 | 001713 (12) | ref|XP_009615859.1| | 4e-90 | PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [ | 715 | 008125 (9) | ref|XP_010491494.1| | 9e-87 | PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [ |
| JMFF024D09 | Sequence | 508 | 001713 (12) | ref|XP_009615859.1| | 9e-82 | PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [ | 801 | 008125 (9) | ref|XP_009131078.1| | 1e-108 | PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [ |
| JMFF025O21 | Sequence | 586 | 001713 (12) | ref|XP_009615859.1| | 5e-106 | PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [ | 741 | 008125 (9) | ref|XP_010491494.1| | 8e-93 | PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [ |
| JMFF031M14 | Sequence | 526 | 001713 (12) | ref|XP_009615859.1| | 9e-48 | PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [ | 708 | 008125 (9) | ref|XP_010452860.1| | 2e-84 | PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [ |
| JMFF032H18 | Sequence | 374 | 001713 (12) | ref|XP_009615859.1| | 1e-46 | PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [ | 821 | 008125 (9) | ref|XP_009131078.1| | 9e-111 | PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [ |
| JMFS008D06 | Sequence | 622 | 001713 (12) | ref|XP_009615859.1| | 7e-118 | PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [ | |||||
| JMSF006G20 | Sequence | 375 | 001713 (12) | ref|XP_009615859.1| | 2e-45 | PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial-like [ | |||||
This contig is upended
. : . : . : . : . : . :
JMFS008D06+ TTTCCTAGCCTTCTCAAGG
____________________________________________________________
consensus TTTCCTAGCCTTCTCAAGG
. : . : . : . : . : . :
JMFS008D06+ TTCTTTCTTTCATTCACATACTCACCCCTGATGTAAATATATGCAGCTTGAGCTCTCATT
JMFF025O21+ ATGTAAATATATGCAGCTTGAGCTCTCATT
JMFF007M12+ TTTCATTCACATACTCACCCCTGATGTAAATATATGCAGCTTGAGCTCTCATT
____________________________________________________________
consensus TTCTTTCTTTCATTCACATACTCACCCCTGATGTAAATATATGCAGCTTGAGCTCTCATT
. : . : . : . : . : . :
JMFS008D06+ CCCACTCCTGCAATCAAACAGCCTTCCAACAATTTGTGCGGATCATGCCGCATTATTTCT
JMFF022O19+ GTGCGGATCATGCCGCATTATTTCT
JMFF025O21+ CCCACTCCTGCAATCAAACAGCCTTCCAACAATTTGTGCGGATCATGCCGCATTATTTCT
JMFF007M12+ CCCACTCCTGCAATCAAACAGCCTTCCAACAATTTGTGCGGATCATGCCGCATTATT--T
JMFF013H01+ CTCCTGCAATCAAACAGCCTTCCAACAATTTGTGCGGATCATGCCGCATTATTTCT
JMFF012H11+ ATTTGTGCGGATCATGCCGCATTATTTCT
____________________________________________________________
consensus CCCACTCCTGCAATCAAACAGCCTTCCAACAATTTGTGCGGATCATGCCGCATTATTTCT
. : . : . : . : . : . :
JMFS008D06+ CTATCTTTACACGTACCAGGTTCACTTTCATCAGCATTGACAACTAGATATGAAGGGCGG
JMFF022O19+ CTATCTTTACACGTACCAGGTTCACTTTCATCAGCATTGACAACTAGATATGAAGGGCGG
JMFF025O21+ CTATCTTTACACGTACCAGGTTCACTTTCATCAGCATTGACAACTAGATATGAAGGGCGG
JMFF007M12+ CTATCTTTACACGTACCAGGTTCACTTTCATCAGCATTGACAACTAGATATGAAGGGCGG
JMFF013H01+ CTATCTTTACACGTACCAGGTTCACTTTCATCAGCATTGACAACTAGATATGAAGGGCGG
JMFF024D09+ CTTTACACGTACCAGGTTCACTTTCATCAGCATTGACAACTAGATATGAAGGGCGG
JMFF012H11+ CTATCTTTACACGTACCAGGTTCACTTTCATCAGCATTGACAACTAGATATGAAGGGCGG
JMFF003M13+ TTTACACGTACCAGGTTCACTTTCATCAGCATTGACAACTAGATATGAAGGGCGG
____________________________________________________________
consensus CTATCTTTACACGTACCAGGTTCACTTTCATCAGCATTGACAACTAGATATGAAGGGCGG
. : . : . : . : . : . :
JMFS008D06+ CCATCAGAAGTCTTTGGCATGAAGGACCATTTAAGACCAGATGGAAAACCAGCACCACCT
JMFF022O19+ CCATCAGAAGTCTTTGGCATGAAGGACCATTTAAGACCAGATGGAAAACCAGCACCACCT
JMFF025O21+ CCATCAGAAGTCTTTGGCATGAAGGACCATTTAAGACCAGATGGAAAACCAGCACCACCT
JMFF007M12+ CCATCAGAAGTCTTTGGCATGAAGGACCATTTAAGACCAGATGGAAAACCAGCACCACCT
JMFF013H01+ CCATCAGAAGTCTTTGGCATGAAGGACCATTTAAGACCAGATGGAAAACCAGCACCACCT
JMFF024D09+ CCATCAGAAGTCTTTGGCATGAAGGACCATTTAAGACCAGATGGAAAACCAGCACCACCT
JMFF012H11+ CCATCAGAAGTCTTTGGCATGAAGGACCATTTAAGACCAGATGGAAAACCAGCACCACCT
JMFF003M13+ CCATCAGAAGTCTTTGGCATGAAGGACCATTTAAGACCAGATGGAAAACCAGCACCACCT
____________________________________________________________
consensus CCATCAGAAGTCTTTGGCATGAAGGACCATTTAAGACCAGATGGAAAACCAGCACCACCT
. : . : . : . : . : . :
JMFS008D06+ CGTCCTCGAAGTCCTGA-TTTTTTAACTTCATTGACAATCCAATCAGTACCTTTTAGTAC
JMFF022O19+ CGTCCTCGAAGTCCTGA-TTTTTTAACTTCATTGACAATCCAATCAGTACCTTTTAGTAC
JMFF025O21+ CGTCCTCGAAGTCCTGA-TTTTTTAACTTCATTGACAATCCAATCAGTACCTTTTAGTAC
JMFF032H18+ TTTTTTAACTTCATTGACAATCCAATCAGTACCTTTTAGTAC
JMFF007M12+ CGTCCTCGAAGTCCTGATTTTTTTAACTTCATTGACAATCCAATCAGTACCTTTTAGTAC
JMFF013H01+ CGTCCTCGAAGTCCTGA-TTTTTTAACTTCATTGACAATCCAATCAGTACCTTTTAGTAC
JMFF024D09+ CGTCCTCGAAGTCCTGA-TTTTTTAACTTCATTGACAATCCAATCAGTACCTTTTAGTAC
JMFF012H11+ CGTCCTCGAAGTCCTGA-TTTTTTAACTTCATTGACAATCCAATCAGTACCTTTTAGTAC
JMFF003M13+ CGTCCTCGAAGTCCTGA-TTTTTTAACTTCATTGACAATCCAATCAGTACCTTTTAGTAC
JMSF006G20+ CAATCCAATCAGTACCTTTTAGTAC
JMFF031M14+ CTGA-TTTTTTAACTTCATTGACAATCCAATCAGTACCTTTTAGTAC
____________________________________________________________
consensus CGTCCTCGAAGTCCTGA-TTTTTTAACTTCATTGACAATCCAATCAGTACCTTTTAGTAC
. : . : . : . : . : . :
JMFS008D06+ AAGGTCCTTTGTTCTGTACCAATCTCCTCGTTTAATGGCACCTTTAAGAAAAGGATCATG
JMFF022O19+ AAGGTCCTTTGTTCTGTACCAATCTCCTCGTTTAATGGCACCTTTAAGAAAAGGATCATG
JMFF025O21+ AAGGTCCTTTGTTCTGTACCAATCTCCTCGTTTAATGGCACCTTTAAGAAAAGGATCATG
JMFF032H18+ AAGGTCCTTTGTTCTGTACCAATCTCCTCGTTTAATGGCACCTTTAAGAAAAGGATCATG
JMFF007M12+ AAGGTCCTTTGTTCTGTACCAATCTCCTCGTTTAATGGCACCTTTAAGAAAAGGATCATG
JMFF013H01+ AAGGTCCTTTGTTCTGTACCAATCTCCTCGTTTAATGGCACCTTTAAGAAAAGGATCATG
JMFF024D09+ AAGGTCCTTTGTTCTGTACCAATCTCCTCGTTTAATGGCACCTTTAAGAAAAGGATCATG
JMFF012H11+ AAGGTCCTTTGTTCTGTACCAATCTCCTCGTTTAATGGCACCTTTAAGAAAAGGATCATG
JMFF003M13+ AAGGTCCTTTGTTCTGTACCAATCTCCTCGTTTAATGGCACCTTTAAGAAAAGGATCATG
JMSF006G20+ AAGGTCCTTTGTTCTGTACCAATCTCCTCGTTTAATGGCACCTTTAAGAAAAGGATCATG
JMFF021D04+ TCTGTACCAATCTCCTCGTTTAATGGCACCTTTAAGAAAAGGATCATG
JMFF031M14+ AAGGTCCTTTGTTCTGTACCAATCTCCTCGTTTAATGGCACCTTTAAGAAAAGGATCATG
____________________________________________________________
consensus AAGGTCCTTTGTTCTGTACCAATCTCCTCGTTTAATGGCACCTTTAAGAAAAGGATCATG
. : . : . : . : . : . :
JMFS008D06+ CAATCCGTAAACGTTTGTGAATATGCGATCCTCATCTTTCAAGCCACCAAAGTGAGTCTT
JMFF022O19+ CAATCCGTAAACGTTTGTGAATATGCGATCCTTATCTTTCAAGCCACCAAAGTGAGTCTT
JMFF025O21+ CAATCCGTAAACGTTTGTGAATATGCGATCCTCATCTTTCAAGCCACCAAAGTGAGTCTT
JMFF032H18+ CAATCCGTAAACGTTTGTGAATATGCGATCCTCATCTTTCAAGCCACCAAAGTGAGTCTT
JMFF007M12+ CAATCCGTAAACGTTTGTGAATATGCGATCCTCATCTTTCAAGCCACCAAAGTGAGTCTT
JMFF013H01+ CAATCCGTAAACGTTTGTGAATATGCGATCCTCATCTTTCAAGCCACCAAAGTGACTCTT
JMFF024D09+ CAATCCGTAAACGTTTGTGAATATGCGATCCTCATCTTTCAAGCCACCAAAGTGAGTCTT
JMFF012H11+ CAATCCGTAAACGTTTGTGAATATGCGATCCTCATCTTTCAAGCCACCAAAGTGAGTCTT
JMFF003M13+ CAATCCGTAAACGTTTGTGAATATGCGATCCTCATCTTTCAAGCCACCAAAGTGAGTCTT
JMSF006G20+ CAATCCGTAAACGTTTGTGAATATGCGATCCTCATCTTTCAAGCCACCAAAGTGAGTCTT
JMFF021D04+ CAATCCGTAAACGTTTGTGAATATGCGATCCTCATCTTTCAAGCCACCAAAGTGAGTCTT
JMFF031M14+ CAATCCGTAAACGTTTGTGAATATGCGATCCTCATCTTTCAAGCCACCAAAGTGAGTCTT
____________________________________________________________
consensus CAATCCGTAAACGTTTGTGAATATGCGATCCTCATCTTTCAAGCCACCAAAGTGAGTCTT
. : . : . : . : . : . :
JMFS008D06+ CTCAGGTGGTGGGGGAGGAGGTGGAGACTGTGGGGTATTAGCAGTTGACGCAGCTTGAGC
JMFF022O19+ CTCAGGTGGTGGGGGAGGAGGTGGAGACTGTGGGGTATTAGCAGTTGACGCAGCTTGAGC
JMFF025O21+ CTCAGGTGGTGGGGGAGGAGGTGGAGACTGTGGGGTATTAGCAGTTGACGCAGCTTGAGC
JMFF032H18+ CTCAGGTGGTGGGGGAGGAGGTGGAGACTGTGGGGTATTAGCAGTTGACGCAGCTTGAGC
JMFF007M12+ CTCAGGTGGTGGGGGAGGAGGTGGAGACTGTGGGGTATTAGCAGTTGACGCAGCTTGAGC
JMFF013H01+ CTCAGGTGGTGGGGGAGGAGGTGGAGACTGTGGGGTATTAGCAGTTGACGCAGCTTGAGC
JMFF024D09+ CTCAGGTGGTGGGGGAGGAGGTGGAGACTGTGGGGTATTAGCAGTTGACGCAGCTTGAGC
JMFF012H11+ CTCAGGTGGTGGGGGAGGAGGTGGAGACTGTGGGGTATTAGCAGTTGACGCAGCTTGAGC
JMFF003M13+ CTCAGGTGGTGGGGGAGGAGGTGGAGACTGTGGGGTATTAGCAGTTGACGCAGCTTGAGC
JMSF006G20+ CTCAGGTGGTGGGGGAGGAGGTGGAGACTGTGGGGTATTAGCAGTTGACGCAGCTTGAGC
JMFF021D04+ CTCAGGTGGTGGGGGAGGAGGTGGAGACTGTGGGGTATTAGCAGTTGACGCAGCTTGAGC
JMFF031M14+ CTCAGGTGGTGGGGGAGGAGGTGGAGACTGTGGGGTATTAGCAGTTGACGCAGCTTGAGC
____________________________________________________________
consensus CTCAGGTGGTGGGGGAGGAGGTGGAGACTGTGGGGTATTAGCAGTTGACGCAGCTTGAGC
. : . : . : . : . : . :
JMFS008D06+ GCTATAGAATCTACCATTTAGGCCCCACTTCTGACTACAACGTTGAACTAATGCAGTCCT
JMFF022O19+ GCTATAGAATCTACCATTTAGGCCCCACTTCTGACTACAACGTTGAACTAATGCAGTCCT
JMFF025O21+ GCTATAGAATCTACCATTTAGGCCCCACTTCTGACTACAACGTTGAACTAATGCAGTCCT
JMFF032H18+ GCTATAGAATCTACCATTTAGGCCCCACTTNTGACTACAACGTTGAANTAATGCAGTCCT
JMFF007M12+ GCTATAGAATCTACCATTTAGGCCCCACTTCTGACTACAACGTTGAACTAATGCAGTCCT
JMFF013H01+ GCTATAGAATCTACCATTTAGGCCCCACTTCTGACTACAACGTTGAACTAATGCAGTCCT
JMFF024D09+ GCTATAGAATCTACCATTTAGGCCCCACTTCTGACTACAACGTTGAACTAATGCAGTCCT
JMFF012H11+ GCTATAGAATCTACCATTTAGGCCCCACTTCTGACTACAACGTTGAACTAATGCAGTCCT
JMFF003M13+ GCTATAGAATCTACCATTTAGGCCCCACTTCTGACTACAACGTTGAACTAATGCAGTCCT
JMSF006G20+ GCTATAGAATCTACCATTTAGGCCCCACTTCTGACTACAACGTTGAACTAATGCAGTCCT
JMFF021D04+ GCTATAGAATCTACCATTTAGGCCCCACTTCTGACTACAACGTTGAACTAATGCAGTCCT
JMFF031M14+ GCTATAGAATCTACCATTTAGGCCCCACTTCTGACTACAACGTTGAACTAATGCAGTCCT
____________________________________________________________
consensus GCTATAGAATCTACCATTTAGGCCCCACTTCTGACTACAACGTTGAACTAATGCAGTCCT
. : . : . : . : . : . :
JMFS008D06+ TTGCAGTGAAAGAAGGCCCTTTACAGGTGCCATAGCAGGCGAAAGATACCGGAGACGAAG
JMFF022O19+ TTGCAGTGAAAGAAGGCCCTTTACAGGTGCCATAGCAGGCGAAAGATACCGGAGACGAAG
JMFF025O21+ TTGCAGTGAAAGAAGGCCCTTTACAGGTGCCATAGCAGGCGAAAGATACCGGAGACGAAG
JMFF032H18+ TTGCAGTGAAAGAAGGCCCTTTACAGGTGCCATAGCAGGCGAAAGATACCGGAGACGAAG
JMFF007M12+ TTGCAGTGAAAGAAGGCCCTTTACAGGTGCCATAGCAGGCGAAAGATACCGGAGACGAAG
JMFF013H01+ TTGCAGTGAAAGAAGGCCCTTTACAGGTGCCATAGCAGGCGAAAGATACCGGAGACGAAG
JMFF024D09+ TTGCAGTGAAAGAAGGCCCTTTACAGGTGCCATAGCAGGCGAAAGATACCGGAGACGAAG
JMFF012H11+ TTGCAGTGAAAGAAGGCCCTTTACAGGTGCCATAGCAGGCGAAAGATACCGGAGACGAAG
JMFF003M13+ TTGCAGTGAAAGAAGGCCCTTTACAGGTGCCATAGCAGGCGAAAGATACCGGAGACGAAG
JMSF006G20+ TTGCAGTGAAAGAAGGCCCTTTACAGGTGCCATAGCAGGCGAAAGATACCGGAGACGAAG
JMFF021D04+ TTGCAGTGAAAGAAGGCCCTTTACAGGTGCCATAGCAGGCGAAAGATACAGGAGACGAAG
JMFF031M14+ TTGCAGTGAAAGAAGGCCCTTTACAGGTGCCATAGCAGGCGAAAGATACCGGAGACGAAG
____________________________________________________________
consensus TTGCAGTGAAAGAAGGCCCTTTACAGGTGCCATAGCAGGCGAAAGATACCGGAGACGAAG
. : . : . : . : . : . :
JMFS008D06+ TGCG
JMFF022O19+ TGCGACGGATCTCTGAT
JMFF025O21+ TGCGACGGATCTCTGAT
JMFF032H18+ TGCGACGGATCTNTGATGCGAAGGT
JMFF007M12+ TGCGACGGATCTCTGATGCGAAGGT
JMFF013H01+ TGCGACGGATCTCTGATGCGAAGGTCGCGAAGTGAGAAACTGAGAAC
JMFF024D09+ TGCGACGGATCTCTGATGCGAAGGTCGCGAAGT
JMFF012H11+ TGCGACGGATCTCTGATGCGAAGGTCGCGAAGTGAGAAACTGAGAACCT
JMFF003M13+ TGCGACGGATCTCTGATGCGAAGGTCGCGAAGTGAGAAACTGAGAACCT
JMSF006G20+ TGCGACGGATCTCTGATGCGAAGGTCGCGAAGTGAGAAACTGAGAACCT
JMFF021D04+ TGCGACGGATCTCTGATGCGAAGGTCGCGAAGTGAGAAACTGAGAACCTAAACTCTGAAT
JMFF031M14+ TGCGACGGATCTCTGATGCGAAGGTCGCGAAGTGAGAAACTGAGAACCTAAACTCTGAAT
____________________________________________________________
consensus TGCGACGGATCTCTGATGCGAAGGTCGCGAAGTGAGAAACTGAGAACCTAAACTCTGAAT
. : . : . : . : . : . :
JMFF021D04+ TCAACCGAGAAGGCTAAAATGGT
JMFF031M14+ TCAACCGAGAAGGCTAAAATGGTGATTCGCACCACAGGGATGGCCGATGGGATGTGAACG
____________________________________________________________
consensus TCAACCGAGAAGGCTAAAATGGTGATTCGCACCACAGGGATGGCCGATGGGATGTGAACG
. : . : . : . : . : . :
JMFF031M14+ CATCAGACGGCTAGGATTTATTGGCGGTACTTCTGGAGCTCTGGCTTTGGTTTGCGAATC
____________________________________________________________
consensus CATCAGACGGCTAGGATTTATTGGCGGTACTTCTGGAGCTCTGGCTTTGGTTTGCGAATC