Contig 001712:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031J11Sequence520001712 (4)ref|XP_006656613.1|9e-05PREDICTED: transcription initiation factor TFIID subunit 14b-like [Oryza brachy714020205
JMSF022F19Sequence698001712 (4)ref|XP_009772041.1|5e-04PREDICTED: transcription initiation factor TFIID subunit 14b-like isoform X4 [N732001712 (4)ref|XP_009772041.1|5e-04PREDICTED: transcription initiation factor TFIID subunit 14b-like isoform X4 [N
JMSF043N10Sequence452001712 (4)ref|XP_006656613.1|7e-05PREDICTED: transcription initiation factor TFIID subunit 14b-like [Oryza brachy723015147

Alignment

This contig is upended


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rJMSF022F19-                                         TATTTTTCATAGTACAATATTGAATTACA
                      ____________________________________________________________
consensus                                            TATTTTTCATAGTACAATATTGAATTACA
 
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JMSF022F19+                GTAATGGGATACAAATGGTTCCTAAATAAGTTGGCCAAACTAGACATGAGAATAT
rJMSF022F19-          AGAATGTAATGGGATACAAATGGTTCCTAAATAAGTTGGCCAAACTAGACATGAGAATAT
                      ____________________________________________________________
consensus             AGAATGTAATGGGATACAAATGGTTCCTAAATAAGTTGGCCAAACTAGACATGAGAATAT
 
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JMSF022F19+           ATGTCATTCTATGCACATAAAGACAGATAATAATTCTCAAGTTTGTCAAAGTTATTGCGG
rJMSF022F19-          ATGTCATTCTATGCACATAAAGACAGATAATAATTCTCAAGTTTGTCAAAGTTATTGCGG
                      ____________________________________________________________
consensus             ATGTCATTCTATGCACATAAAGACAGATAATAATTCTCAAGTTTGTCAAAGTTATTGCGG
 
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JMSF022F19+           TCGGCACTTTGGAAGTCCTTTGTCTTAGAGAGAATGTCTGATATGATGTCTGGTCGGGTC
rJMSF022F19-          TCGGCACTTTGGAAGTCCTTTGTCTTAGAGAGAATGTCTGATATGATGTCTGGTCGGGTC
                      ____________________________________________________________
consensus             TCGGCACTTTGGAAGTCCTTTGTCTTAGAGAGAATGTCTGATATGATGTCTGGTCGGGTC
 
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JMSF022F19+           CGATTTGATGTTTAGATATGCAATAATTCCCTTGTTGTAGATCAAATTGCAATCTTGATG
rJMSF022F19-          CGATTTGATGTTTAGATATGCAATAATTCCCTTGTTGTAGATCAAATTGCAATCTTGATG
                      ____________________________________________________________
consensus             CGATTTGATGTTTAGATATGCAATAATTCCCTTGTTGTAGATCAAATTGCAATCTTGATG
 
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JMSF022F19+           CTGCCATATATATATACTGCAACTCAAATTCATAATTTTAATTTCCTTGTCATTTTATGT
rJMSF022F19-          CTGCCATATATATATACTGCAACTCAAATTCATAATTTTAATTTCCTTGTCATTTTATGT
                      ____________________________________________________________
consensus             CTGCCATATATATATACTGCAACTCAAATTCATAATTTTAATTTCCTTGTCATTTTATGT
 
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JMSF022F19+           TTTGAGAAGGATTGCATATGCCAAAATAGCTTGTTTGTACTGGATATGAATCTTCTCTTG
JMSF043N10+                                                  CTGGATATGAATCTTCTCTTG
rJMSF022F19-          TTTGAGAAGGATTGCATATGCCAAAATAGCTTGTTTGTACTGGATATGAATCTTCTCTTG
JMFF031J11+                                                  CTGGATATGAATCTTCTCTTG
                      ____________________________________________________________
consensus             TTTGAGAAGGATTGCATATGCCAAAATAGCTTGTTTGTACTGGATATGAATCTTCTCTTG
 
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JMSF022F19+           TACGCTTGCATCCTTTGGAAAACTTTCACTGGGTTTTTGCAGAGATGAAGGCAGAGAAAA
JMSF043N10+           TACGCTTGCATCCTTTGGAAAACTTTCACTGGGTTTTTGCAGAGATGAAGGCAGAGAAAA
rJMSF022F19-          TACGCTTGCATCCTTTGGAAAACTTTCACTGGGTTTTTGCAGAGATGAAGGCAGAGAAAA
JMFF031J11+           TACGCTTGCATCCTTTGGAAAACTTTCACTGGGTTTTTGCAGAGATGAAGGCAGAGAAAA
                      ____________________________________________________________
consensus             TACGCTTGCATCCTTTGGAAAACTTTCACTGGGTTTTTGCAGAGATGAAGGCAGAGAAAA
 
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JMSF022F19+           TTGTGGGATTAGAAGCAGAGACAATTTTTGCAAAGATGAGGGGAAAACCAGAGACGCAGG
JMSF043N10+           TTGTGGGATTAGAAGCAGAGACAATTTTTGCAAAGATGAGGGGAAAACCAGAGACGCAGG
rJMSF022F19-          TTGTGGGATTAGAAGCAGAGACAATTTTTGCAAAGATGAGGGGAAAACCAGAGACGCAGG
JMFF031J11+           TTGTGGGATTAGAAGCAGAGACAATTTTTGCAAAGATGAGGGGAAAACCAGGGACGCAGG
                      ____________________________________________________________
consensus             TTGTGGGATTAGAAGCAGAGACAATTTTTGCAAAGATGAGGGGAAAACCAGAGACGCAGG
 
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JMSF022F19+           TTCTTAGGCCTCTTTAATCTGTGGGAACAGCAAAATACACATGTAATTATCAAACTTAAA
JMSF043N10+           TTCTTAGGCCTCTTTAATCTG                                       
rJMSF022F19-          TTCTTAGGCCTCTTTAATCTGTGGGAACAGCAAAATACACATGTAATTATCAAACTTAAA
JMFF031J11+           TTCTTAGGCCTCTTTAATCTGTGGGAACAGCAAAATACACATGTAATTATCAAACTTAAA
                      ____________________________________________________________
consensus             TTCTTAGGCCTCTTTAATCTGTGGGAACAGCAAAATACACATGTAATTATCAAACTTAAA
 
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JMSF022F19+           AGATCTAATCCATTCTAAATAACTAACCTGCTGTAAGTTTTAAGCGCTCATCCGCCGCAG
rJMSF022F19-          AGATCTAATCCATTCTAAATAACTAACCTGCTGTAAGTTTTAAGCGCTCATCCGCCGCAG
JMFF031J11+           AGATCTAATCCATTCTAAATAACTAACCTGCTGTAAGTTTTAAGCGCTCATCCGCCGCAG
                      ____________________________________________________________
consensus             AGATCTAATCCATTCTAAATAACTAACCTGCTGTAAGTTTTAAGCGCTCATCCGCCGCAG
 
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JMSF022F19+           AGAAATTAGTGAACCATTGGCTTAGAGGATGATCTTTACTGTAACCTAGCCGCTCTTCCT
rJMSF022F19-          AGAAATTAGTGAACCATTGGCTTAGAGGATGATCTTTACTGTAACCTAGCCGCTCTTCCT
JMFF031J11+           AGAAATTAGTGAACCATTGGCTTAGAGGATGATCTTTACTGTAACCTAGCCGCTCTTCCT
                      ____________________________________________________________
consensus             AGAAATTAGTGAACCATTGGCTTAGAGGATGATCTTTACTGTAACCTAGCCGCTCTTCCT
 
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JMSF022F19+           TGCGGAAACGGCGGAGCGGTGCTGATGAAGATTGTACGCCT                   
rJMSF022F19-          TGCGGAAACGGCGGAGCGGTGCTGATGAAGATTGTACGCCT                   
JMFF031J11+           TGCGGAAACGGCGGAGCGGTGCTGATGAAGATTGTACGCCTGGTTTGGTAGTGTAGATAG
                      ____________________________________________________________
consensus             TGCGGAAACGGCGGAGCGGTGCTGATGAAGATTGTACGCCTGGTTTGGTAGTGTAGATAG