Contig 001710:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF030P20Sequence422001710 (4)ref|XP_006465041.1|2e-17PREDICTED: putative disease resistance protein RGA3-like isoform X1 [Citrus sin803011737 (3)ref|XP_007011208.1|6e-13NB-ARC domain-containing disease resistance protein, putative [Theobroma cacao]
JMFS015G02Sequence547001710 (4)ref|XP_009614610.1|2e-47PREDICTED: putative disease resistance protein RGA3 [Nicotiana tomentosiformis]
JMFS150E11Sequence625001710 (4)ref|XP_009796828.1|2e-32PREDICTED: putative disease resistance protein RGA3 [Nicotiana sylvestris]
JMFS156A08Sequence641001710 (4)ref|XP_009796828.1|6e-32PREDICTED: putative disease resistance protein RGA3 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS015G02+                                                            TGGCTTTTGCA
                      ____________________________________________________________
consensus                                                              TGGCTTTTGCA
 
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JMFS015G02+           ATCTTGATCTGGTCAAAGGGGTCGGAAACACAAATCCACACCCTTTCATCAAAATGAGTC
                      ____________________________________________________________
consensus             ATCTTGATCTGGTCAAAGGGGTCGGAAACACAAATCCACACCCTTTCATCAAAATGAGTC
 
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JMFS015G02+           TTGATCTTTTCATCCCCAAAGACTAGTTGAGCAAGGGTAGTTTTCCCTATCCCTCCCGTG
                      ____________________________________________________________
consensus             TTGATCTTTTCATCCCCAAAGACTAGTTGAGCAAGGGTAGTTTTCCCTATCCCTCCCGTG
 
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JMFS015G02+           CCCACTATGGAAATCACATGGGGCCCATTTCCATTTCTTGCTTCTTCTTCTCCAGAATTC
                      ____________________________________________________________
consensus             CCCACTATGGAAATCACATGGGGCCCATTTCCATTTCTTGCTTCTTCTTCTCCAGAATTC
 
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JMFS015G02+           TTCAGTAACTTGCTTATTAAAGCACTGGCATCGGATTTCCGACCTTGAATCTCTGACACA
                      ____________________________________________________________
consensus             TTCAGTAACTTGCTTATTAAAGCACTGGCATCGGATTTCCGACCTTGAATCTCTGACACA
 
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JMFS015G02+           TCCACATCAAACGCAGTGGTGACTCGCATCAATTCTTGATCAGAGTGTGATGCTGCAGAA
                      ____________________________________________________________
consensus             TCCACATCAAACGCAGTGGTGACTCGCATCAATTCTTGATCAGAGTGTGATGCTGCAGAA
 
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JMFS015G02+           GTGTGTGTTATAGATGCATAATCAAATTTGAACTGATCTTTCTCTTTTGTAATCCGATCA
JMFS150E11+                                 CAAATTTGAACTCATCTTTCTCTTTGGTGATCCGATCA
JMFS156A08+                                 CAAATTTGAACTCATCTTTCTCTTTGGTGATCCGATCA
                      ____________________________________________________________
consensus             GTGTGTGTTATAGATGCATAATCAAATTTGAACTCATCTTTCTCTTTGGTGATCCGATCA
 
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JMFS015G02+           AGTGTTGAATCAAGCTCCTTTATTTTCTTGGCGATGTCTCGATGCATAGCAAACCTTTTG
JMFS150E11+           AGTCTGGAATCGAGATCCTTTATTTTGTTGGCGATGTCTCGATGCATAACAATCCTTTTG
JMFS156A08+           AGTCTGGAATCGAGATCCTTTATTTTGTTGGCGATGTCTCGATGCATAACAATCCTTTTG
                      ____________________________________________________________
consensus             AGTCTGGAATCGAGATCCTTTATTTTGTTGGCGATGTCTCGATGCATAACAATCCTTTTG
 
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JMFS015G02+           TAATGGAAACGCGAAGGCAGGAAAGA                                  
JMFS150E11+           AAAGGGAAACAACAAGGCAGGAAAGAGCTACAGCTTCCTGCAGTTGGAGCTGCTGCAACC
JMFS156A08+           AAAGGGAAACAACAAGGCAGGAAAGAGCTACAGCTTCCTGCAGTTGGAGCTGCTGCAACC
                      ____________________________________________________________
consensus             AAAGGGAAACAACAAGGCAGGAAAGAGCTACAGCTTCCTGCAGTTGGAGCTGCTGCAACC
 
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JMFS150E11+           TGGGACGACCTCTCCATCTGTTGTCTGCGACTTCTGGTGCTCCACTCATCAAGAACATCT
JMFS156A08+           TGGGACGACCTCTCCATCTGTTGTCTGCGACTTCTGGTGCTCCACTCATCAAGAACATCT
JMFF030P20+                                               GTGCTCCACTCATCAAGAACATCT
                      ____________________________________________________________
consensus             TGGGACGACCTCTCCATCTGTTGTCTGCGACTTCTGGTGCTCCACTCATCAAGAACATCT
 
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JMFS150E11+           TCCACATCATAGCAGAAGGCTTTCATCTCTTCCACCCACAGCTTGACGCTCTCTTCCATG
JMFS156A08+           TCCACATCATAGCAGAAGGCTTTCATCTCTTCCACCCACAGCTTGACGCTCTCTTCCATG
JMFF030P20+           TCCACATCATAGCAGAAGGCTTTCATCTCTTCCACCCACAGCTTGACGCTCTCTTCCATG
                      ____________________________________________________________
consensus             TCCACATCATAGCAGAAGGCTTTCATCTCTTCCACCCACAGCTTGACGCTCTCTTCCATG
 
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JMFS150E11+           AAGCTTCTCCTCTCTGCATCGACCAACACCGCCCTGATTTTGTTGAGCTTTGATGAGAGG
JMFS156A08+           AAGCTTCTCCTCTCTGCATCGACCAACACCGCCCTGATTTTGTTGAGCTTTGATGAGAGG
JMFF030P20+           AAGCTTCTCCTCTCTGCATCGACCAACACCGCCCTGATTTTGTTGAGCTTTGATGAGAGG
                      ____________________________________________________________
consensus             AAGCTTCTCCTCTCTGCATCGACCAACACCGCCCTGATTTTGTTGAGCTTTGATGAGAGG
 
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JMFS150E11+           TTTTTGATCTCCTTCTCCACACCCAACGTTGCTCTTAGCTCCTGGATTTGGTCCTTGACG
JMFS156A08+           TTTTTGATCTCCTTCTCCACACCCAACGTTGCTCTTAGCTCCTGGATTTGGTCCTTGACG
JMFF030P20+           TTTTTGATCTCCTTCTCCACACCCAACGTTGCTCTTAGCTCCTGGATTTGGTCCTTGACG
                      ____________________________________________________________
consensus             TTTTTGATCTCCTTCTCCACACCCAACGTTGCTCTTAGCTCCTGGATTTGGTCCTTGACG
 
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JMFS150E11+           ATGATGGACAGCAGATCCACAACACCGGAGATGATAGCGTCGGCCATG            
JMFS156A08+           ATGATGGACAGCAGATCCACAACACCGGAGATGATAGCGTCGGCCATG            
JMFF030P20+           ATGATGGACAGCAGATCCACAACACCGGAGATGATAGCGTCGGCCATGGTTAGTTCACTC
                      ____________________________________________________________
consensus             ATGATGGACAGCAGATCCACAACACCGGAGATGATAGCGTCGGCCATGGTTAGTTCACTC
 
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JMFF030P20+           TGTACTCGATCTGTAGCAGTGGAGACTGAATGACTTTTAGATTGGTTTGGGTTTGGTTGT
                      ____________________________________________________________
consensus             TGTACTCGATCTGTAGCAGTGGAGACTGAATGACTTTTAGATTGGTTTGGGTTTGGTTGT