Contig 001707:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF030D10Sequence531001707 (2)ref|XP_009600038.1|1e-22PREDICTED: protein notum homolog [Nicotiana tomentosiformis]356014868ref|XP_006355154.1|2e-08PREDICTED: protein notum homolog [Solanum tuberosum]
JMFF031K20Sequence606001707 (2)ref|XP_009600038.1|1e-39PREDICTED: protein notum homolog [Nicotiana tomentosiformis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF031K20+                                                                CTCTATA
                      ____________________________________________________________
consensus                                                                  CTCTATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF031K20+           GTAGAGTTTAGTGACCGGATCAGGTTTTTCAACATCTCCCGCGAATGACCCACCATCACA
                      ____________________________________________________________
consensus             GTAGAGTTTAGTGACCGGATCAGGTTTTTCAACATCTCCCGCGAATGACCCACCATCACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF031K20+           ATACCGAATAATAACTCGATTCCACTTATAAAATTTAGTAAAGGTTGCATTTATACC-GA
JMFF030D10+                                CCACTTATAAAATTTAGTAAAGGTTGCATTTATACCGGA
                      ____________________________________________________________
consensus             ATACCGAATAATAACTCGATTCCACTTATAAAATTTAGTAAAGGTTGCATTTATACCGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF031K20+           ATATGCCTTTAAATACGAAAGGTGCCATGTTGAAAGTAGAACCCAATTCACGTTTCATAC
JMFF030D10+           ATATGCCTTTAAATACGAAAGGTGCCATGTTGAAAGTAGAACCCAATTCACGTTTCATAC
                      ____________________________________________________________
consensus             ATATGCCTTTAAATACGAAAGGTGCCATGTTGAAAGTAGAACCCAATTCACGTTTCATAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF031K20+           GACTCGAACAACTCTCAACAGAGAGGTCATGAGTAGAATATGTGTCATTACTAGTACACC
JMFF030D10+           GACTCGAACAACTCTCAACAGAGAGGTCATGAGTAGAATATGTGTCATTACTAGTACACC
                      ____________________________________________________________
consensus             GACTCGAACAACTCTCAACAGAGAGGTCATGAGTAGAATATGTGTCATTACTAGTACACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF031K20+           ACCCTCCTCCTGCAAGGTAAATGAGCCAATTGCTCGCGTCTTCATCTTTCCCAGGAGAGA
JMFF030D10+           ACCCTCCTCCTGCAAGGTAAATGAGCCAATTGCTCGCGTCTTCATCTTTCCCAGGAGAGA
                      ____________________________________________________________
consensus             ACCCTCCTCCTGCAAGGTAAATGAGCCAATTGCTCGCGTCTTCATCTTTCCCAGGAGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF031K20+           AATGATAGGCGGGGGGACTCCCATCCAAACAAACAGCTCCTTTCTCATCGGCACCCGGGA
JMFF030D10+           AATGATAGGCGGGGGGACTCCCATCCAAACAAACAGCTCCTTTCTCATCGGCACCCGGGA
                      ____________________________________________________________
consensus             AATGATAGGCGGGGGGACTCCCATCCAAACAAACAGCTCCTTTCTCATCGGCACCCGGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF031K20+           TAATAGTTTTGGGAATAAGAAGATCGAGATCCTGAATAATAGGTGTGGGAATAGGATTGG
JMFF030D10+           TAATAGTTTTGGGAATAAGAAGATCGAGATCCTGAATAATAGGTGTGGGAATAGGATTGG
                      ____________________________________________________________
consensus             TAATAGTTTTGGGAATAAGAAGATCGAGATCCTGAATAATAGGTGTGGGAATAGGATTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF031K20+           AGTTTACATATTGCACACTTATAACCAAAGAAAAAATCAGCAAACATATCCAATCATTTG
JMFF030D10+           AGTTTACATATTGCACACTTATAACCAAAGAAAAAATCAGCAAACATATCCAATCATTTG
                      ____________________________________________________________
consensus             AGTTTACATATTGCACACTTATAACCAAAGAAAAAATCAGCAAACATATCCAATCATTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF031K20+           ACCTTGGTGAGACAGCCATTCTCAAAGACTCAGGATTATTGGCTTCCAAGGTTAGGAGAT
JMFF030D10+           ACCTTGGTGAGACAGCCATTCTCAAAGACTCAGGATTATTGGCTTCCAAGGTTAGGAGAT
                      ____________________________________________________________
consensus             ACCTTGGTGAGACAGCCATTCTCAAAGACTCAGGATTATTGGCTTCCAAGGTTAGGAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF031K20+           CAAGTCCCCCCTCAACCTCGAATGAAACAAAGACAAAGTTAAATGATTATTTTGTGATCT
JMFF030D10+           CAAGTCCCCCCTCAACCTCGAATGAAACAAAGACAAAGTTAAATGATTATTTTGTGATCT
                      ____________________________________________________________
consensus             CAAGTCCCCCCTCAACCTCGAATGAAACAAAGACAAAGTTAAATGATTATTTTGTGATCT