Contig 001706:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF029N03Sequence354001706 (3)gb|KDP37352.1|5e-05hypothetical protein JCGZ_06806 [Jatropha curcas]330001706 (3)gb|KDP37352.1|5e-05hypothetical protein JCGZ_06806 [Jatropha curcas]
JMFS043G08Sequence353001706 (3)gb|KDP37352.1|7e-05hypothetical protein JCGZ_06806 [Jatropha curcas]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS043G08+                                                                  GAAAA
                      ____________________________________________________________
consensus                                                                    GAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS043G08+           AAAAATAAAAATTATTCCATAATATATAATCGGTAAAATAATTAATTGCCGTACATGAAA
rJMFF029N03-                                             AAATAATTAATTGCCGTACATGAAA
JMFF029N03+                         TTCCATAATATATAATCGGTAAAATAATTAATTGCCGTACATGAAA
                      ____________________________________________________________
consensus             AAAAATAAAAATTATTCCATAATATATAATCGGTAAAATAATTAATTGCCGTACATGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS043G08+           TTAAATGCTCGTAATAAATCATACGATACAAACATATGAACAATATCTTAATTAGGTCCT
rJMFF029N03-          TTAAATGCTCGTAATAAATCATACGATACAAACATATGAACAATATCTTAATTAGGTCCT
JMFF029N03+           TTAAATGCTCGTAATAAATCATACGATACAAACATATGAACAATATCTTAATTAGGTCCT
                      ____________________________________________________________
consensus             TTAAATGCTCGTAATAAATCATACGATACAAACATATGAACAATATCTTAATTAGGTCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS043G08+           GAAGAAGGCGAAAAGGGAGACGATGAGAGAGGTCCCGAGCAGAGCACCGGAAACCGGCAA
rJMFF029N03-          GAAGAAGGCGAAAAGGGAGACGATGAGAGAGGTCCCGAGCAGAGCACCGGAAACCGGCAA
JMFF029N03+           GAAGAAGGCGAAAAGGGAGACGATGAGAGAGGTCCCGAGCAGAGCACCGGAAACCGGCAA
                      ____________________________________________________________
consensus             GAAGAAGGCGAAAAGGGAGACGATGAGAGAGGTCCCGAGCAGAGCACCGGAAACCGGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS043G08+           AGACAACCCTGCTCCGACATCAGGCGACGGCGCCGGGGCTAAATCCTGTGCCGAGGCAGA
rJMFF029N03-          AGACAACCCTGCTCCGACATCAGGCGACGGCGCCGGGGCTAAATCCTGTGCCGAGGCAGA
JMFF029N03+           AGACAACCCTGCTCCGACATCAGGCGACGGCGCCGGGGCTAAATCCTGTGCCGAGGCAGA
                      ____________________________________________________________
consensus             AGACAACCCTGCTCCGACATCAGGCGACGGCGCCGGGGCTAAATCCTGTGCCGAGGCAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS043G08+           AAACGCTGCGGCGGCGAACACAACAACGAGCACGAAAGCATTGATCACGCTAACTTGCGC
rJMFF029N03-          AAACGCTGCGGCGGCGAACACAACAACGAGCACGAAAGCATTGATCACGCTAACTTGCGC
JMFF029N03+           AAACGCTGCGGCGGCGAACACAACAACGAGCACGAAAGCATTGATCACGCTAACTTGCGC
                      ____________________________________________________________
consensus             AAACGCTGCGGCGGCGAACACAACAACGAGCACGAAAGCATTGATCACGCTAACTTGCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS043G08+           CATTTGTGAAGGCGAAATACTCTCGACTCTTGAGATTTCAAGGACTCT            
rJMFF029N03-          CATTTGTGAAGGCGAAATACTCTCGACTCTTGAGATTTCAAGGACTCTGATTCTGTTAGT
JMFF029N03+           CATTTGTGAAGGCGAAATACTCTCGACTCTTGAGATTTCAAGGACTCTGATTCTGTTAGT
                      ____________________________________________________________
consensus             CATTTGTGAAGGCGAAATACTCTCGACTCTTGAGATTTCAAGGACTCTGATTCTGTTAGT