Contig 001705:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF029K12Sequence603001705 (2)ref|XP_004239214.1|5e-25PREDICTED: non-specific lipid transfer protein GPI-anchored 1 [Solanum lycopers719001705 (2)ref|XP_004239214.1|1e-24PREDICTED: non-specific lipid transfer protein GPI-anchored 1 [Solanum lycopers

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF029K12-                                                                 AAATT
                      ____________________________________________________________
consensus                                                                    AAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF029K12-          ACATAAAGATTACATTCCAGAGGTAAATATTTTAAAAATATAAGTATGGTGTTCTAAGCC
                      ____________________________________________________________
consensus             ACATAAAGATTACATTCCAGAGGTAAATATTTTAAAAATATAAGTATGGTGTTCTAAGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF029K12-          AGCATAGAAATTATATTTATCGTAACTACATACATTTAAAACAATTTCCAAAATGTGAAA
                      ____________________________________________________________
consensus             AGCATAGAAATTATATTTATCGTAACTACATACATTTAAAACAATTTCCAAAATGTGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF029K12-          TAGAAGATGGCTACCGCAACCGGTAAGTGTCCAGCAAGCTGCAGGGGATTATGCTTGAAG
                      ____________________________________________________________
consensus             TAGAAGATGGCTACCGCAACCGGTAAGTGTCCAGCAAGCTGCAGGGGATTATGCTTGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF029K12-          GCATTGGAGGGAGCAGGGCCTGCTCCGACGCCGGGAGTAGTGGAAGCAGAATTAGCAGAA
                      ____________________________________________________________
consensus             GCATTGGAGGGAGCAGGGCCTGCTCCGACGCCGGGAGTAGTGGAAGCAGAATTAGCAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF029K12-          GTGTTGGTGAAGAAAGCGATGTCGGGAGAGTTTGCCGGAAGTTTCAACAGCTCTGTTCAT
                      ____________________________________________________________
consensus             GTGTTGGTGAAGAAAGCGATGTCGGGAGAGTTTGCCGGAAGTTTCAACAGCTCTGTTCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF029K12-          TGTATATATCAATAATCAATCAATAGAATCACATGTGTGTGAGATCATGTCACTCGGACA
JMFF029K12+                                                                TCGGACA
                      ____________________________________________________________
consensus             TGTATATATCAATAATCAATCAATAGAATCACATGTGTGTGAGATCATGTCACTCGGACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF029K12-          GGTAGTGACGTTGACGTCGTTGATCTTGCAAGCAGAAGGGAGCTGAAGCAATCGAGCTTC
JMFF029K12+           GGTAGTGACGTTGACGTCGTTGATCTTGCAAGCAGAAGGGAGCTGAAGCAATCGAGCTTC
                      ____________________________________________________________
consensus             GGTAGTGACGTTGACGTCGTTGATCTTGCAAGCAGAAGGGAGCTGAAGCAATCGAGCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF029K12-          CTGAATACCGGAGCTCTGTATCTGAGTGTTAGATCCATTGTGCACCTGCTCTATCATATA
JMFF029K12+           CTGAATACCGGAGCTCTGTATCTGAGTGTTAGATCCATTGTGCACCTGCTCTATCATATA
                      ____________________________________________________________
consensus             CTGAATACCGGAGCTCTGTATCTGAGTGTTAGATCCATTGTGCACCTGCTCTATCATATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF029K12-          GCAAAAGCAAAGCGGGCGTTCACTCGCCTCGATGCTCGACGCCGACTCGCAGCACTCCTT
JMFF029K12+           GCAAAAGCAAAGCGGGCGTTCACTCGCCTCGATGCTCGACGCCGACTCGCAGCACTCCTT
                      ____________________________________________________________
consensus             GCAAAAGCAAAGCGGGCGTTCACTCGCCTCGATGCTCGACGCCGACTCGCAGCACTCCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF029K12-          CCCTGGCGTCGCCGCCTTCCCAGTAGCGAAGCTCAGGCACGCCACCACCTTCTGGATGTC
JMFF029K12+           CCCTGGCGTCGCCGCCTTCCCAGTAGCGAAGCTCAGGCACGCCACCACCTTCTGGATGTC
                      ____________________________________________________________
consensus             CCCTGGCGTCGCCGCCTTCCCAGTAGCGAAGCTCAGGCACGCCACCACCTTCTGGATGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF029K12-          TTTCCCGCACCTGTCCTGCAAGTCCTCGGCTCCCTTTACCAAACCGCCGCTCACAATCAA
JMFF029K12+           TTTCCCGCACCTGTCCTGCAAGTCCTCGGCTCCCTTTACCAAACCGCCGCTCACAATCAA
                      ____________________________________________________________
consensus             TTTCCCGCACCTGTCCTGCAAGTCCTCGGCTCCCTTTACCAAACCGCCGCTCACAATCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF029K12-          CATTACTAATAAACAGTAGTAGAAGATTGTTTGTAGCCTCATCGTCATTTTCTT      
JMFF029K12+           CATTACTAATAAACAGTAGTAGAAGATTGTTTGTAGCCTCATCGTCATTTTCTTCAATTC
                      ____________________________________________________________
consensus             CATTACTAATAAACAGTAGTAGAAGATTGTTTGTAGCCTCATCGTCATTTTCTTCAATTC