Contig 001697:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008D19Sequence397001697 (5)gb|AFQ23178.1|1e-37HSPRO [Nicotiana attenuata]642010985 (4)ref|XP_009613712.1|2e-80PREDICTED: nematode resistance protein-like HSPRO2 [Nicotiana tomentosiformis]
JMFF021K09Sequence427001697 (5)gb|AFQ23178.1|5e-46HSPRO [Nicotiana attenuata]661010985 (4)ref|XP_009613712.1|1e-100PREDICTED: nematode resistance protein-like HSPRO2 [Nicotiana tomentosiformis]
JMFF024B22Sequence490001697 (5)gb|AFQ23178.1|2e-85HSPRO [Nicotiana attenuata]797010985 (4)ref|XP_009613712.1|1e-89PREDICTED: nematode resistance protein-like HSPRO2 [Nicotiana tomentosiformis]
JMFF027F18Sequence493001697 (5)gb|AFQ23178.1|5e-58HSPRO [Nicotiana attenuata]734010985 (4)ref|XP_009613712.1|7e-117PREDICTED: nematode resistance protein-like HSPRO2 [Nicotiana tomentosiformis]
JMSF030F17Sequence635001697 (5)gb|AFQ23178.1|3e-82HSPRO [Nicotiana attenuata]671011000 (18)ref|XP_011092558.1|6e-96PREDICTED: 40S ribosomal protein S16-like [Sesamum indicum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF024B22+                                               CAGGGAGTGAAGCTCCGACGGCTT
                      ____________________________________________________________
consensus                                                 CAGGGAGTGAAGCTCCGACGGCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF024B22+           CACGATCGCGTCGTAGTCGAGGCTCGGTTTTCCGGTGAGGTTCGGTTCGCCTAATCCAAC
                      ____________________________________________________________
consensus             CACGATCGCGTCGTAGTCGAGGCTCGGTTTTCCGGTGAGGTTCGGTTCGCCTAATCCAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF024B22+           GGTGTACGAACACCGCCGCATCTCGCTTTCGATGGCGTAGAGAATCTTCTGAGCTATGTC
                      ____________________________________________________________
consensus             GGTGTACGAACACCGCCGCATCTCGCTTTCGATGGCGTAGAGAATCTTCTGAGCTATGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF024B22+           CTCCGATTTGCGCCACGTCATCAGCCGAGGCAGCAAGCTAGCTTCGCTCGTGTGGCTCAC
JMSF030F17+                                       GGCAGCAAGCTAGCTTCGCTCGTGTGGCTCAC
                      ____________________________________________________________
consensus             CTCCGATTTGCGCCACGTCATCAGCCGAGGCAGCAAGCTAGCTTCGCTCGTGTGGCTCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF024B22+           AACCGTCGTTTCGCCGGAGAGCTTCCACACCTCAGCCGAGCTGTTCTCACGTGACAACAC
JMSF030F17+           AACCGTCGTTTCGCCGGAGAGCTTCCACACCTCAGCCGAGCTGTTCTCACGTGACAACAC
                      ____________________________________________________________
consensus             AACCGTCGTTTCGCCGGAGAGCTTCCACACCTCAGCCGAGCTGTTCTCACGTGACAACAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF024B22+           CACGTCCGACGACGTCAGATCGACAATCGGAGCCGCGCCACGCGTCTCTCCATCATCCTC
JMSF030F17+           CACGTCCGACGACGTCAGATCGACAATCGGAGCCGCGCCACGCGTCTCTCCATCATCCTC
JMFF027F18+                                                          CTCCATCATCCTC
                      ____________________________________________________________
consensus             CACGTCCGACGACGTCAGATCGACAATCGGAGCCGCGCCACGCGTCTCTCCATCATCCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF024B22+           ACACAACATAGCAATAATCTCAACCTGACTCCGAGCAAGCGACTCCAACCGCCGCTTCCA
JMSF030F17+           ACACAACATAGCAATAATCTCAACCTGACTCCGAGCAAGCGACTCCAACCGCCGCTTCCA
JMFF021K09+                                                                GCTTCCA
JMFF027F18+           ACACAACATAGCAATAATCTCAACCTGACTCCGAGCAAGCGACTCCAACCGCCGCTTCCA
                      ____________________________________________________________
consensus             ACACAACATAGCAATAATCTCAACCTGACTCCGAGCAAGCGACTCCAACCGCCGCTTCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF024B22+           CTCCCGCCGGTTCGCGTACGGTCTAGGATCCGACAACACCA---GAACGAACCGGAAAGT
JMSF030F17+           CTCCCGCCGGTTCGCGTACGGTCTAGGATCCGACAACACCACAGAAACGAACCGGAAAGT
JMFF021K09+           CTCCCGCCGGTTCGCGTACGGTCTAGGATCCGACAACACCACAGAAACGAACCGGAAAGT
JMFF008D19+                                  TAGGATCCGACAACACCACAGAAACGAACCGGAAAGT
JMFF027F18+           CTCCCGCCGGTTCGCGTACGGTCTAGGATCCGACAACACCACAGAAACGAACCGGAAAGT
                      ____________________________________________________________
consensus             CTCCCGCCGGTTCGCGTACGGTCTAGGATCCGACAACACCACAGAAACGAACCGGAAAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF024B22+           TATCTCCAACCCTTGCAGAGCCGGCGTGAGCAGCGCCTCGTTCTTCCAC           
JMSF030F17+           TATCTCCAACCCTTGCAGAGCCGGCGTGAGCAGCGCCTCGTTCTTCCACCCCGGAAACTC
JMFF021K09+           TATCTCCAACCCTTGCAGAGCCGGCGTGAGCAGCGCCTCGTTCTTCCACCCCGGAAACTC
JMFF008D19+           TATCTCCAACCCTTGCAGAGCCGGCGTGAGCAGCGCCTCGTTCTTCCACCCCGGAAACTC
JMFF027F18+           TATCTCCAACCCTTGCAGAGCCGGCGTGAGCAGCGCCTCGTTCTTCCACCCCGGAAACTC
                      ____________________________________________________________
consensus             TATCTCCAACCCTTGCAGAGCCGGCGTGAGCAGCGCCTCGTTCTTCCACCCCGGAAACTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF030F17+           ATCACAACTCCACAGCTTCCTCAGCTCCGGCAGCCTCAAGTAGTACTCATAAGCGGAACA
JMFF021K09+           ATCACAACTCCACAGCTTCCTCAGCTCCGGCAGCCTCAAGTAGTACTCATAAGCGGAACA
JMFF008D19+           ATCACAACTCCACAGCTTCCTCAGCTCCGGCAGCCTCAAGTAGTACTCATAAGCGGAACA
JMFF027F18+           ATCACAACTCCACAGCTTCCTCAGCTCCGGCAGCCTCAAGTAGTACTCATAAGCGGAACA
                      ____________________________________________________________
consensus             ATCACAACTCCACAGCTTCCTCAGCTCCGGCAGCCTCAAGTAGTACTCATAAGCGGAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF030F17+           AGCCGAGTCACTCGCCGTGGTCAACTCCCACACACGCGCCGGCGGCGCCGGTATAGAAAT
JMFF021K09+           AGCCGAGTCACTCGCCGTGGTCAACTCCCACACACGCGCCGGCGGCGCCGGTATAGAAAT
JMFF008D19+           AGCCGAGTCACTCGCCGTGGTCAACTCCCACACACGCGCCGGCGGCGCCGGTATAGAAAT
JMFF027F18+           AGCCGAGTCACTCGCCGTGGTCAACTCCCACACACGCGCCGGCGGCGCCGGTATAGAAAT
                      ____________________________________________________________
consensus             AGCCGAGTCACTCGCCGTGGTCAACTCCCACACACGCGCCGGCGGCGCCGGTATAGAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF030F17+           CTGATGCTGCTTATTCGAAATCCTAGGCGACGACTTACTGGACATATCAGGTGAAACCAT
JMFF021K09+           CTGATGCTGCTTATTCGAAATCCTAGGCGACGACTTACTGGACATATCAGGTGAAACCAT
JMFF008D19+           CTGATGCTGCTTATTCGAAATCCTAGGCGACGACTTACTGGACATATCAGGTGAAACCAT
JMFF027F18+           CTGATGCTGCTTATTCGAAATCCTAGGCGACGACTTACTGGACATATCAGGTGAAACCAT
                      ____________________________________________________________
consensus             CTGATGCTGCTTATTCGAAATCCTAGGCGACGACTTACTGGACATATCAGGTGAAACCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF030F17+           CTCCGTCTTCCGATCAAAATCCAGCATTTTTCATAAAACCAAAGCAATCAAATCAACAAA
JMFF021K09+           CTCCGTCTTCCGATCAAAATCCAGCATTTTTCATAAAACCAAAGCAATCAAATCAACAAA
JMFF008D19+           CTCCGTCTTCCGATCAAAATCCAGCATTTTTCATAAAACCAAAGCAATCAAATCAACAAA
JMFF027F18+           CTCCGTCTTCCGATCAAAATCCAGCATTTTTCATAAAACCAAAGCAATCAAATCAACAAA
                      ____________________________________________________________
consensus             CTCCGTCTTCCGATCAAAATCCAGCATTTTTCATAAAACCAAAGCAATCAAATCAACAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF030F17+           GAATGCAAGAACAAATATTCAATATTCAAAAAA                           
JMFF021K09+           GAATGCAAGAACAAATATTCAATATTCAAAAAATAAATAAATAAAGAAA           
JMFF008D19+           GAATGCAAGAACAAATATTCAATATTCAAAAAA                           
JMFF027F18+           GAATGCAAGAACAAATATTCAATATTCAAAAAATAAATAAATAAAGAAATCCTTTACTTT
                      ____________________________________________________________
consensus             GAATGCAAGAACAAATATTCAATATTCAAAAAATAAATAAATAAAGAAATCCTTTACTTT