Contig 001694:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007M23Sequence497001694 (5)435011199 (5)ref|XP_006342335.1|2e-28PREDICTED: probable protein phosphatase 2C 6-like isoform X5 [Solanum tuberosum
JMFF022A11Sequence310001694 (5)753011199 (5)ref|XP_010324035.1|3e-106PREDICTED: probable protein phosphatase 2C 6 isoform X6 [Solanum lycopersicum]
JMFF026H07Sequence310001694 (5)736011199 (5)ref|XP_010324035.1|2e-64PREDICTED: probable protein phosphatase 2C 6 isoform X6 [Solanum lycopersicum]
JMFF047K15Sequence573001694 (5)496011199 (5)ref|XP_010324033.1|5e-11PREDICTED: probable protein phosphatase 2C 50 isoform X5 [Solanum lycopersicum]
JMFS021F07Sequence608001694 (5)

Alignment

This contig is upended


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JMFF047K15+                  GAGAGCAAACTGGTGTTGCTATCAGCTCGATTCCATTGATATCCATACACGAT
                      ____________________________________________________________
consensus                    GAGAGCAAACTGGTGTTGCTATCAGCTCGATTCCATTGATATCCATACACGAT
 
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JMFF047K15+           GGAAGCACGGATTCATCATACACCAGGCTTCCGGGCTTGAAAGGCACCTCCTCCATTCGA
JMFS021F07+                     ATTCATCATACACCAGGCTTCCGGGCTTGAAAGGCACCTCCTCCATTCGA
                      ____________________________________________________________
consensus             GGAAGCACGGATTCATCATACACCAGGCTTCCGGGCTTGAAAGGCACCTCCTCCATTCGA
 
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JMFF047K15+           TTTCCTCTCGAGACCCCCAACTTAAAAACCCCCCAATCAAAACTATACACCTCTCCTAAT
JMFF007M23+                                TTAAAANCCCCCCAATCAAAANTATACACCTNTCNTAAT
JMFS021F07+           TTTCCTCTCGAGACCCCCAACTTAAAAACCCCCCAATCAAAACTATACACCTCTCCTAAT
                      ____________________________________________________________
consensus             TTTCCTCTCGAGACCCCCAACTTAAAAACCCCCCAATCAAAACTATACACCTCTCCTAAT
 
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JMFF047K15+           TACACCACACCTCAAGTCACCAAACAAAGGGCACTTTCAGATTTCAAATATTATTATACA
JMFF007M23+           TACACCACACCTCAAGTCACCAAACAAAGGGCACTTTCAGATTTCAAATATTATTATACA
JMFS021F07+           TACACCACACCTCAAGTCACCAAACAAAGGGCACTTTCAGATTTCAAATATTATTATACA
                      ____________________________________________________________
consensus             TACACCACACCTCAAGTCACCAAACAAAGGGCACTTTCAGATTTCAAATATTATTATACA
 
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JMFF047K15+           AAGAAGCCAGTTTCAGGTCCCATACAAGAGAATCAAATTGATGAAAACCCTGGCTCAAAT
JMFF007M23+           AAGAAGCCAGTTTCAGGTCCCATACAAGAGAATCAAATTGATGAAAACCCTGGCTCAAAT
JMFS021F07+           AAGAAGCCAGTTTCAGGTCCCATACAAGAGAATCAAATTGATGAAAACCCTGGCTCAAAT
                      ____________________________________________________________
consensus             AAGAAGCCAGTTTCAGGTCCCATACAAGAGAATCAAATTGATGAAAACCCTGGCTCAAAT
 
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JMFF047K15+           TGGAATCCATTACAGGGCAGAATATGGATCCAAACACTTATGTTTCAATTTCAAAGGGAA
JMFF007M23+           TGGAATCCATTACAGGGCAGAATATGGATCCAAACACTTATGTTTCAATTTCAAAGGGAA
JMFS021F07+           TGGAATCCATTACAGGGCAGAATATGGATCCAAACACTTATGTTTCAATTTCAAAGGGAA
                      ____________________________________________________________
consensus             TGGAATCCATTACAGGGCAGAATATGGATCCAAACACTTATGTTTCAATTTCAAAGGGAA
 
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JMFF047K15+           TCATATCCGGTTTCAGCATCTTCTTAGCTCCTATTCCAATTATATTCTCACCACATCAAG
JMFF007M23+           TCATATCCGGTTTCAGCATCTTCTTAGCTCCTATTCCAATTATATTCTCACCACATCAAG
JMFS021F07+           TCATATCCGGTTTCAGCATCTTCTTAGCTCCTATTCCAATTATATTCTCACCACATCAAG
JMFF026H07+                                                                CATCAAG
                      ____________________________________________________________
consensus             TCATATCCGGTTTCAGCATCTTCTTAGCTCCTATTCCAATTATATTCTCACCACATCAAG
 
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JMFF047K15+           AAAGCCAAACAGCAAGGTCCCATCCCACAATCAAACCCCACCCCACCCAAATCCACAGAA
JMFF007M23+           AAAGCCAAACAGCAAGGTCCCATCCCACAATCAAACCCCACCCCACCCAAATCCACAGAA
JMFS021F07+           AAAGCCAAACAGCAAGGTCCCATCCCACAATCAAACCCCACCCCACCCAAATCCACAGAA
JMFF022A11+                                                          CAAATCCACAGAA
JMFF026H07+           NAAGCCAAACAGCNAGGTCCCATCCCNCAATCAAACCCCNCCCCNCCCAAATCCNCAGAA
                      ____________________________________________________________
consensus             AAAGCCAAACAGCAAGGTCCCATCCCACAATCAAACCCCACCCCACCCAAATCCACAGAA
 
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JMFF047K15+           GAATCCCAAGAAATCAATTCAGCTGCTGACCAAAAACTCCCCAACTTCAGATTCTGAAGG
JMFF007M23+           GAATCCCAAGAAATCAATTCAGCTGCTGACCAAAAACTCCCCAACTTCAGATTCTGAAGG
JMFS021F07+           GAATCCCAAGAAATCAATTCAGCTGCTGACCAAAAACTCCCCAACTTCAGATTCTGAAGG
JMFF022A11+           GAATCCCAAGAAATCAATTCAGCTGCTGACCAAAAACTCCCCAACTTCAGATTCTGAAGG
JMFF026H07+           GAATCCCAAGAAATCAATTCAGNTGNTGNCCAAAAACTCCCCAACTTCAGATTTTGAAGG
                      ____________________________________________________________
consensus             GAATCCCAAGAAATCAATTCAGCTGCTGACCAAAAACTCCCCAACTTCAGATTCTGAAGG
 
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JMFF047K15+           TAAAGAAACCTCCTTTCTCTCTCTGCGCCTAACAAA                        
JMFF007M23+           TAAAGAAACCTCCTTTCTCTCTCTGCGCCTAACAAAC                       
JMFS021F07+           TAAAGAAACCTCCTTTCTCTCTCTGCGCCTAACAAAC                       
JMFF022A11+           TAAAGAAACCTCCTTTCTCTCTCTGCGCCTAACAAAC                       
JMFF026H07+           TAAAGAAACCTCCTTTNTNTNTTTGCGCCTAACAAACGTTCCAAAACAGTGCNCTAAAAG
                      ____________________________________________________________
consensus             TAAAGAAACCTCCTTTCTCTCTCTGCGCCTAACAAACGTTCCAAAACAGTGCNCTAAAAG
 
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JMFF026H07+           GGTAGNCTATGACTTTTAGATTAGGCCTTTGGTTAAAAACCAACTTAAACTAATNTGGGA
                      ____________________________________________________________
consensus             GGTAGNCTATGACTTTTAGATTAGGCCTTTGGTTAAAAACCAACTTAAACTAATNTGGGA
 
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JMFF026H07+           AAAAAAAAAATTCTTCAAACAAATAAAAAGGAAATATAGAAGAGGGGGAGAAAGAGAAAT
                      ____________________________________________________________
consensus             AAAAAAAAAATTCTTCAAACAAATAAAAAGGAAATATAGAAGAGGGGGAGAAAGAGAAAT