Contig 001689:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF025F04Sequence527001689 (5)emb|CDP09826.1|9e-98unnamed protein product [Coffea canephora]768001689 (5)ref|XP_011072055.1|1e-133PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamn
JMFN007H21Sequence446001689 (5)ref|XP_010430376.1|4e-58PREDICTED: probable rhamnose biosynthetic enzyme 1 [Camelina sativa]
JMFS035A04Sequence618001689 (5)emb|CDP09826.1|1e-125unnamed protein product [Coffea canephora]
JMFS107H09Sequence619001689 (5)emb|CDP09826.1|3e-126unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFN007H21+                                                        TTCCATTCCCAATTT
rJMFF025F04-                       TTCTGTGCGCATTCCGTGCCAAGACACAGACATTCCATTCCCAATTT
                      ____________________________________________________________
consensus                          TTCTGTGCGCATTCCGTGCCAAGACACAGACATTCCATTCCCAATTT
 
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JMFN007H21+           TATTGATGATGAAACAATAGAGATACAACAACATTCAATAGAGATACAACAAGTGAAGGA
rJMFF025F04-          TATTGATGATGAAACAATAGAGATACAACAACATTCAATAGAGATACAACAAGTGAAGGA
                      ____________________________________________________________
consensus             TATTGATGATGAAACAATAGAGATACAACAACATTCAATAGAGATACAACAAGTGAAGGA
 
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JMFN007H21+           GGATGAATTCAAACATATATCCACCCAACCCAGCAAGCAAACTCGATCTTGAGTTTCAAG
rJMFF025F04-          GGATGAATTCAAACATATATCCACCCAACCCAGCAAGCAAACTCGATCTTGAGTTTCAAG
                      ____________________________________________________________
consensus             GGATGAATTCAAACATATATCCACCCAACCCAGCAAGCAAACTCGATCTTGAGTTTCAAG
 
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JMFN007H21+           CTGCGACAGGAGTCTTCCTATTTGGATGGAAAACATAGCGTATAAGCGAATCCTTAATCG
rJMFF025F04-          CTGCGACAGGAGTCTTCCTATTTGGCTGGAAAACATAGCGTATAAGCGAATCCTTAATCG
                      ____________________________________________________________
consensus             CTGCGACAGGAGTCTTCCTATTTGGCTGGAAAACATAGCGTATAAGCGAATCCTTAATCG
 
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JMFN007H21+           ACAAGAGCTGTGGGAATTCTGTCTTGAGTTTTGTCGCGTCAAGTTCATTGTTGCTTCTGG
rJMFF025F04-          ACAAGAGCTGTGGGAATTCTGTCTTGAGTTTTGTCGCGTCAAGTTCATTGTTGCTTCTGG
                      ____________________________________________________________
consensus             ACAAGAGCTGTGGGAATTCTGTCTTGAGTTTTGTCGCGTCAAGTTCATTGTTGCTTCTGG
 
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JMFN007H21+           GAGCAACAATCACCTTAGCCTGTTCTTCTAGAGTGAAGTTCTTCCAGGTGAACTTTGGGT
rJMFF025F04-          GAGCAACAATCACCTTAGCCTGTTCTTCTAGAGTGAAGTTCTTCCAGGTGAACTTTGGGT
                      ____________________________________________________________
consensus             GAGCAACAATCACCTTAGCCTGTTCTTCTAGAGTGAAGTTCTTCCAGGTGAACTTTGGGT
 
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JMFN007H21+           CGATGTAGTCTCTGTACATCTCAAGAATCTCGTTATGGCTAACGACTCCAGGGTTGGTGA
rJMFF025F04-          CGATGTAGTCTCTGTACATCTCAAGAATCTCGTTATGGCTAACGACTCCAGGGTTGGTGA
                      ____________________________________________________________
consensus             CGATGTAGTCTCTGTACATCTCAAGAATCTCGTTATGGCTAACGACTCCAGGGTTGGTGA
 
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JMFN007H21+           AGTTCCAGATTCCGGTGAGGTTTCTCTTCGCCATTTCAATGGAGATCGGTAGTTGCTCGT
rJMFF025F04-          AGTTCCAGATTCCGGTGAGGTTTCTCTTCGCCATTTCAATGGAGATCGGGAGAAGCTCGT
                      ____________________________________________________________
consensus             AGTTCCAGATTCCGGTGAGGTTTCTCTTCGCCATTTCAATGGAGATCGGTAGTTGCTCGT
 
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JMFN007H21+           CCAAGATTG                                                   
rJMFF025F04-          CCAAGATTGTCATGGAATTCGGAATGTTCACCACTTTCTCGTAGCGTGTGATCTTGGTGA
JMFS107H09+                                        ACCACTTTCTCGTAGCGTGTGATCTTGGTGA
JMFS035A04+                                      TCACCACTTTCTCGTAGCGTGTGATCTTGGTGA
                      ____________________________________________________________
consensus             CCAAGATTGTCATGGAATTCGGAATGTTCACCACTTTCTCGTAGCGTGTGATCTTGGTGA
 
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rJMFF025F04-          TGAAGTTTCTGGGGTTGGATAAATCCGATGAGATCGGCATTCTCACTCGTAATGTGCAGA
JMFS107H09+           TGAAGTTTCTGGGGTTGGATAAATCCGATGAGATCGGCATTCTCACTCGTAATGTGCAGA
JMFS035A04+           TGAAGTTTCTGGGGTTGGATAAATACGATGAGATCGGCATTCTCACTCGTAATGTGCAGA
                      ____________________________________________________________
consensus             TGAAGTTTCTGGGGTTGGATAAATCCGATGAGATCGGCATTCTCACTCGTAATGTGCAGA
 
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rJMFF025F04-          CATTCTCGTAGTTCTTCAGCAAATCCTCCACCATTGCTTTGGTTTTGGAGTAGAAAGATC
JMFS107H09+           CATTCTCGTAGTTCTTCAGCAAATCCTCCACCATTGCTTTGGTTTTGGAGTAGAAAGATC
JMFS035A04+           CATTCTCGTAGTTCTTCAGCAAATCCTCCACCATTGCTTTGGTTTTGGAGTAGAAAGATC
JMFF025F04+                        CTTCAGCAAATCCTCCACCATTGCTTTGGTTTTGGAGTAGAAAGATC
                      ____________________________________________________________
consensus             CATTCTCGTAGTTCTTCAGCAAATCCTCCACCATTGCTTTGGTTTTGGAGTAGAAAGATC
 
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rJMFF025F04-          CGATGAAGTTGGGGGTGTCTTCTTCCTTGAAGCCGACGCCGGAGCCGAGGGGGTGGCCGG
JMFS107H09+           CGATGAAGTTGGGGGTGTCTTCTTCCTTGAAGCCGACGCCGGAGCCGAGGGGGTGGCCGG
JMFS035A04+           CGATGAAGTTGGGGGTGTCTTCTTCCTTGAAGCCGACGCCGGAGCCGAGGGGGTGGCCGG
JMFF025F04+           CGATGAAGTTGGGGGTGTCTTCTTCCTTGAAGCCGACGCCGGAGCCGAGGGGGTGGCCGG
                      ____________________________________________________________
consensus             CGATGAAGTTGGGGGTGTCTTCTTCCTTGAAGCCGACGCCGGAGCCGAGGGGGTGGCCGG
 
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rJMFF025F04-          AGTCGTACTCGAAGATACAGCCGGTGGCGTAGTTGATGAGGACGANGCCCTTGTCCCGGC
JMFS107H09+           AGTCGTACTCGAAGATACAGCCGGTGGCGTAGTTGATGAGGACGAGGCCCTTGTCCCGGC
JMFS035A04+           AGTCGTACTCGAAGATACAGCCGGTGGCGTAGTTGATGAGGACGAGGCCCTTGTCCCGGC
JMFF025F04+           AGTCGTACTCGAAGATACAGCCGGTGGCGTAGTTGATGAGGACGAGGCCCTTGTCCCGGC
                      ____________________________________________________________
consensus             AGTCGTACTCGAAGATACAGCCGGTGGCGTAGTTGATGAGGACGAGGCCCTTGTCCCGGC
 
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rJMFF025F04-          A                                                           
JMFS107H09+           AGACGTCGGCGAGAGTGAGGGTGCCGGCGACATTTGTGCGGATGGTTTCCACCTTGTGCG
JMFS035A04+           AGACGTCGGCGAGAGTGAGGGTGCCGGCGACATTTGTGCGGATGGTTTCCACCTTGTGCG
JMFF025F04+           AGACGTCGGCGAGAGTGAGGGTGCCGGCGACATTTGTGCGGATGGTTTCCACCTTGTGCG
                      ____________________________________________________________
consensus             AGACGTCGGCGAGAGTGAGGGTGCCGGCGACATTTGTGCGGATGGTTTCCACCTTGTGCG
 
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JMFS107H09+           ACTCGCAACAGTCGACGTTGGGACGGCCGGTCACTCCGGCGGCGTTGAACACGTGCGTCG
JMFS035A04+           ACTCGCAACAGTCGACGTTGGGACGGCCGGTCACTCCGGCGGCGTTGAACACGTGCGTCG
JMFF025F04+           ACTCGCAACAGTCGACGTTGGGACGGCCGGTCACTCCGGCGGCGTTGAACACGTGCGTCG
                      ____________________________________________________________
consensus             ACTCGCAACAGTCGACGTTGGGACGGCCGGTCACTCCGGCGGCGTTGAACACGTGCGTCG
 
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JMFS107H09+           GATTAACGGCGGCGATGTCGGCCTCCAACGAACTCCGGTTCTCCAGCCGCCCGGACCCAT
JMFS035A04+           GATTAACGGCGGCGATGTCGGCCTCCAACGAACTCCGGTTCTCCAGCCGCCCGGACCCAT
JMFF025F04+           GATTAACGGCGGCGATGTCGGCCTCCAACGAACTCCGGTTCTCCAGCCGCCCGGACCCAT
                      ____________________________________________________________
consensus             GATTAACGGCGGCGATGTCGGCCTCCAACGAACTCCGGTTCTCCAGCCGCCCGGACCCAT
 
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JMFS107H09+           ACACGTACTCGATCCCTTGACCCTCGCACAGCTTCCCCAGCAGGCCGCCAATCCACCCCG
JMFS035A04+           ACACGTACTCGATCCCTTGACCCTCGCACAGCTTCCCCAGCAGGCCGCCAATCCACCCCG
JMFF025F04+           ACACGTACTCGTTCCCTTGACCCTCGCACAGCTTCCCCAGCAGGCCGCCAATCCACCCCG
                      ____________________________________________________________
consensus             ACACGTACTCGATCCCTTGACCCTCGCACAGCTTCCCCAGCAGGCCGCCAATCCACCCCG
 
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JMFS107H09+           TCCGCCCGTAGATCAGGAACTTCAACGCCGTCTTTTCCGATGACCCGTTCGCCGGAAAAC
JMFS035A04+           TCCGCCCGTAGATCAGGAACTTCAACGCCGTCTTTTCCGATGACCCGTTCGCCGGAAAAC
JMFF025F04+           TCCGCCCGTAGATCAGGAACTTCAACGCCGTCTTTTCCGATGACCCGTTCGCCGGAAAAC
                      ____________________________________________________________
consensus             TCCGCCCGTAGATCAGGAACTTCAACGCCGTCTTTTCCGATGACCCGTTCGCCGGAAAAC
 
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JMFS107H09+           CCATCACGTATAGTTCAGACAGAAAAGAGTCTTGA                         
JMFS035A04+           CCATCACGTATAGTTCAGACAGAAAAGAGTCTTGA                         
JMFF025F04+           CCATCACGTATAGTTCAGACAGAAAAGAGTCTTGAGTGAGAGAGATGAAAGAAGTGAAAT
                      ____________________________________________________________
consensus             CCATCACGTATAGTTCAGACAGAAAAGAGTCTTGAGTGAGAGAGATGAAAGAAGTGAAAT