Contig 001684:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF011L05-                                                                     G
                      ____________________________________________________________
consensus                                                                        G
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF011L05-          TACAACCTGACCAAAATTAATACTGGAAATATGCAATGGCACACCAAAGACCAAACAATA
                      ____________________________________________________________
consensus             TACAACCTGACCAAAATTAATACTGGAAATATGCAATGGCACACCAAAGACCAAACAATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF011L05-          CATAGAAGATACAAGGTTTAGTAGCAAAAAACTACATAGTTCTATATTAGTTCAAAGTCG
                      ____________________________________________________________
consensus             CATAGAAGATACAAGGTTTAGTAGCAAAAAACTACATAGTTCTATATTAGTTCAAAGTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF011L05-          CTCCATCTTAAAGTTACATTAGAAGTTCATACAACCAGTTTTTCCTAGCGCCAGACAGCT
                      ____________________________________________________________
consensus             CTCCATCTTAAAGTTACATTAGAAGTTCATACAACCAGTTTTTCCTAGCGCCAGACAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF011L05-          TTACAGATGGGTCGGGAAGGGAAACTTAGCCTCCCCGAGTTTCTGATGAGTACATTATTC
                      ____________________________________________________________
consensus             TTACAGATGGGTCGGGAAGGGAAACTTAGCCTCCCCGAGTTTCTGATGAGTACATTATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF011L05-          AAGGGACTCCTTCAAACGGGCAATCAATTCATCCTTTTTTCCTCTCGGGGAAAGGCCCTT
                      ____________________________________________________________
consensus             AAGGGACTCCTTCAAACGGGCAATCAATTCATCCTTTTTTCCTCTCGGGGAAAGGCCCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF011L05-          CTCCTTCAAGAGTGCACGGAGTCTCTCCACTGTCATGCTGTGGTAATCTCGTTCAGGCAT
                      ____________________________________________________________
consensus             CTCCTTCAAGAGTGCACGGAGTCTCTCCACTGTCATGCTGTGGTAATCTCGTTCAGGCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF011L05-          ACGGTTTTTAGTTCCTTCCTGGCGAGAAGCGGCTTGACTGCTGCTTGCAGCCTTCTTCGC
JMSF011L05+                                     AAGCGGCTTGACTGCTGCTTGCAGCNTTCTTCGC
                      ____________________________________________________________
consensus             ACGGTTTTTAGTTCCTTCCTGGCGAGAAGCGGCTTGACTGCTGCTTGCAGCCTTCTTCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF011L05-          TGATGCTCTACCATCCAGTGCTCTTTCCGCACATCTTTTTCTTGAACTTTCACTCGTAGG
JMSF011L05+           TGATGCTCTACCATCCAGTGCTCTTTCCGCACATCTTTTTCTTGAACTTTCACTCGTAGG
                      ____________________________________________________________
consensus             TGATGCTCTACCATCCAGTGCTCTTTCCGCACATCTTTTTCTTGAACTTTCACTCGTAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF011L05-          AATACTTTTCCCATCTTTTGAACCAGATTCAGCCTTCTGCTTTTTAAGCATGAGAGATCT
JMSF011L05+           AATACTTTTCCCATCTTTTGAACCAGATTCAGCCTTCTGCTTTTTAAGCATGAGAGATCT
JMFF024M13+                   TCCCATCTTTTGAAACAGATTCAGCCTTCTGCTTTTTAAGCATGAGAGATCT
                      ____________________________________________________________
consensus             AATACTTTTCCCATCTTTTGAACCAGATTCAGCCTTCTGCTTTTTAAGCATGAGAGATCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF011L05-          AATTAAGATGTTCATCTGGTCTGTCTTAATGAGCTGGTCCTCTGGAGGTGATGTGTCATG
JMSF011L05+           AATTAAGATGTTCATCTGGTCTGTCTTAATGAGCTGGTCCTCTGGAGGTGATGTGTCATG
JMFF024M13+           AATTAAGATGTTCATCTGGTCTGTCTTAATGAGCTGGTCCTCTGGAGGTGATGTGTCATG
                      ____________________________________________________________
consensus             AATTAAGATGTTCATCTGGTCTGTCTTAATGAGCTGGTCCTCTGGAGGTGATGTGTCATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF011L05-          ATCACAAATATAAACCCGCATTCCACCCGGATTGGATGAAAGCACGGTGGAGGAAAAGAG
JMSF011L05+           ATCACAAATATAAACCCGCATTCCACCCGGATTGGATGAAAGCACGGTGGAGGAAAAGAG
JMFF024M13+           ATCACAAATATAAACCCGCATTCCACCCGGATTGGATGAAAGCACGGTGGAGGAAGAGAG
                      ____________________________________________________________
consensus             ATCACAAATATAAACCCGCATTCCACCCGGATTGGATGAAAGCACGGTGGAGGAAAAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF011L05-          GCCGCGAGAAGGGAGGTTTGCGAGGAATTTAGCTGCCGTTCCACCGCCGCCGAT      
JMSF011L05+           GCCGCGAGAAGGGAGGTTTGCGAGGAATTTAGCTGCCGTTCCACCGCCGCCGATATCAGA
JMFF024M13+           GCCGCGAGAAGGGAGGTTTGCGAGGAATTTAGCTGCCGTTACACCGCCGCCGATATCAGA
                      ____________________________________________________________
consensus             GCCGCGAGAAGGGAGGTTTGCGAGGAATTTAGCTGCCGTTCCACCGCCGCCGATATCAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF011L05+           AGCCGTTGTTGCATGCTTCGAATTGGGCGGAGTTGACGATCCACACTCGCCCTCCCCCAT
JMFF024M13+           AGCCGTTGTTGCATGCTTCGAATTGGGCGGAGTTGACGATCCACACTCGCCCTCCCCCAT
                      ____________________________________________________________
consensus             AGCCGTTGTTGCATGCTTCGAATTGGGCGGAGTTGACGATCCACACTCGCCCTCCCCCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF011L05+           GTCTCCGACGCGCTAATTTGGTTCTGTTCTCACTTCGCACCCGCTACGGCTAC       
JMFF024M13+           GTCTCCGACGCGCTAATTTGGTTCTGTTCTCACTTCGCACCCGCTACGGCTACGGCTACG
                      ____________________________________________________________
consensus             GTCTCCGACGCGCTAATTTGGTTCTGTTCTCACTTCGCACCCGCTACGGCTACGGCTACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF024M13+           CACAGAGAATTTAGAGCAATTTATGCAGAATACCAACCGAGTGGAGGAGAAGGAGACAAT
                      ____________________________________________________________
consensus             CACAGAGAATTTAGAGCAATTTATGCAGAATACCAACCGAGTGGAGGAGAAGGAGACAAT