Contig 001678:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF023J05Sequence492001678 (3)722001483 (3)ref|XP_009757584.1|109PREDICTED: transcription factor BIM1 isoform X1 [Nicotiana sylvestris]
JMFS056E12Sequence626001678 (3)ref|XP_006345090.1|3e-18PREDICTED: transcription factor BIM1-like isoform X1 [Solanum tuberosum]
JMSF047P09Sequence622001678 (3)ref|XP_006345090.1|3e-16PREDICTED: transcription factor BIM1-like isoform X1 [Solanum tuberosum]755001483 (3)ref|XP_009757586.1|118PREDICTED: transcription factor BIM1 isoform X3 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS056E12+                     AGTGGTTGCAAGAAATCATGAGTTCTGAGGAATCCCCCTGCTTGGCGGGG
JMSF047P09+                             CAAGAAATCATGAGTTCTGAGGAATCCCCCTGCTNGGCGGGG
                      ____________________________________________________________
consensus                       AGTGGTTGCAAGAAATCATGAGTTCTGAGGAATCCCCCTGCTTGGCGGGG
 
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JMFS056E12+           TCTTGGATCTTGTTCCGCGGGTGAATATAGGGAAAGAAAGTCATGCGTCGTCTTTCTGCC
JMSF047P09+           TCTTGGATCTTGTTCCGCGGGTGAATATAGGGAAAGAAAGTCATGCGTCGTCTTTCTGCC
                      ____________________________________________________________
consensus             TCTTGGATCTTGTTCCGCGGGTGAATATAGGGAAAGAAAGTCATGCGTCGTCTTTCTGCC
 
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JMFS056E12+           GTCAGTTCCGAAAGCTCTTGGTTGAGGCAACTCCATCCACTCTCCTTCTTCGCGATTTTC
JMSF047P09+           GTCAGTTCCGAAAGCTCTTGGTTGAGGCAACTCCATCCACTCTCCTTCTTCGCGATTTTC
JMFF023J05+                                                           TTCGCGATTTTC
                      ____________________________________________________________
consensus             GTCAGTTCCGAAAGCTCTTGGTTGAGGCAACTCCATCCACTCTCCTTCTTCGCGATTTTC
 
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JMFS056E12+           CGAAATTCAACTGAATTTCCGATGGATGCAGCGGAATTCCACAATTCAGAAATTTAAATT
JMSF047P09+           CGAAATTCAACTGAATTTCCGATGGATGCAGCGGAATTCCACAATTCAGAAATTTAAATT
JMFF023J05+           CGAAATTCAACTGAATTTCCGATGGATGCAGCGGAATTCCACAATTCAGAAATTTAAATT
                      ____________________________________________________________
consensus             CGAAATTCAACTGAATTTCCGATGGATGCAGCGGAATTCCACAATTCAGAAATTTAAATT
 
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JMFS056E12+           CTTCAGCTGACGTTTAGATCCGCCTCCCGCCGATGATGGGAGGCGCATTCAGGAGCTTTT
JMSF047P09+           CTTCAGCTGACGTTTAGATCCGCCTCCCGCCGATGATGGGAGGCGCATTCAGGAGCTTTT
JMFF023J05+           CTTCAGCTGACGTTTAGATCCGCCTCCCGCCGATGATGGGAGGCGCATTCAGGAGCTTTT
                      ____________________________________________________________
consensus             CTTCAGCTGACGTTTAGATCCGCCTCCCGCCGATGATGGGAGGCGCATTCAGGAGCTTTT
 
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JMFS056E12+           TTTACAGCTAAAAAGCTCGACGGCTTTTTCCGGTGAAAGTTTGAGTTTCCGGGGGAATTC
JMSF047P09+           TTTACAGCTAAAAAGCTCGACGGCTTTTTCCGGTGAAAGTTTCAGTTTCCGGGGGAATTC
JMFF023J05+           TTTACAGCTAAAAAGCTCGACGGCTTTTTCCGGTGAAAGTTTCAGTTTCCGGGGGAATTC
                      ____________________________________________________________
consensus             TTTACAGCTAAAAAGCTCGACGGCTTTTTCCGGTGAAAGTTTCAGTTTCCGGGGGAATTC
 
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JMFS056E12+           TCGTCACTCTTCGTTTCTGTGAGATACACACACGCAATGAAGAATTCGGGTTGAAAATCA
JMSF047P09+           TCGTCACTCTTCGTTTCTGTGAGATACACACACGCAATGAAGAATTCGGGTTGAAAATCA
JMFF023J05+           TCGTCACTCTTCGTTTCTGTGAGATACACACACGCAATGAAGAATTCGGGTTGAAAATCA
                      ____________________________________________________________
consensus             TCGTCACTCTTCGTTTCTGTGAGATACACACACGCAATGAAGAATTCGGGTTGAAAATCA
 
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JMFS056E12+           AACCCAGCTCCCGGAATTCTCCCGGCGGAATGAGGAAGTGATCCAATCCAAACAGTAAAA
JMSF047P09+           AACCCAGCTCCCGGAATTCTCCCGGCGGAATGAGGAAGTGATCCAATCCAAACAGTAAAA
JMFF023J05+           AACCCAGCTCCCGGAATTCTCCCGGCGGAATGAGGAAGTGATCCAATCCAAACAGTAAAA
                      ____________________________________________________________
consensus             AACCCAGCTCCCGGAATTCTCCCGGCGGAATGAGGAAGTGATCCAATCCAAACAGTAAAA
 
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JMFS056E12+           CTTTTCTCGATTATTGCTTGTAGGCCCCGTTATCCCGTTCAGGATTAACAAGAACACCGT
JMSF047P09+           CTTTTCTCGATTATTGCTTGTAGGCCCCGTTATCCCGTTCAGGATTAACAAGAACACCGT
JMFF023J05+           CTTTTCTCGATTATTGCTTGTAGGCCCCGTTATCCCGTTCAGGATTAACAAGAACACCGT
                      ____________________________________________________________
consensus             CTTTTCTCGATTATTGCTTGTAGGCCCCGTTATCCCGTTCAGGATTAACAAGAACACCGT
 
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JMFS056E12+           TCCAGAACACCAACTATACTCGCTCAACCTCAATTCAGAGCCTCTCTCTCTCTAGAATTC
JMSF047P09+           TCCAGAACACCAACTATACTCGCTCAACCTCAATTCAGAGCCTCTCTCTCTCTAGAATTC
JMFF023J05+           TCCAGAACACCAACTATACTCGCTCAACCTCAATTCAGAGCCTCTCTCTCTCTAGAATTC
                      ____________________________________________________________
consensus             TCCAGAACACCAACTATACTCGCTCAACCTCAATTCAGAGCCTCTCTCTCTCTAGAATTC
 
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JMFS056E12+           CTTTTTTTTCTCTCTCTCTCTCTAGAATTCCTTTTT                        
JMSF047P09+           CTTTTTTTTCTCTCTCTCTCTCTAGAATTCCTTTTT                        
JMFF023J05+           CTTTTTTTTCTCTCTCTCTCTCTAGAATTCCTTTTTTCTTTCCTGTGAGGGACAGAGTGT
                      ____________________________________________________________
consensus             CTTTTTTTTCTCTCTCTCTCTCTAGAATTCCTTTTTTCTTTCCTGTGAGGGACAGAGTGT