Contig 001677:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF023H22Sequence283001677 (3)735007936 (3)ref|XP_004242315.1|1e-101PREDICTED: cullin-1-like [Solanum lycopersicum]
JMFS065H02Sequence617001677 (3)ref|XP_004242315.1|8e-70PREDICTED: cullin-1-like [Solanum lycopersicum]
JMFS159C10Sequence445001677 (3)emb|CAC87838.1|2e-57cullin 1D [Nicotiana tabacum]

Alignment

This contig is upended


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JMFS065H02+                       AAGTACCGGTCAAGATAGTGGAAAAATCTAGAAAGCCACCTGACCATA
                      ____________________________________________________________
consensus                         AAGTACCGGTCAAGATAGTGGAAAAATCTAGAAAGCCACCTGACCATA
 
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JMFS159C10+            CCTTGTGATTTGCCCACCTTTTAACAAGCTCCCTTAGCATGAACTCATCATGCTTCTCT
JMFS065H02+           ACCTTGTGATTTGCCCACCTTTTAACAAGCTCCCTTAGCATGAACTCATCATGCTTCTCT
                      ____________________________________________________________
consensus             ACCTTGTGATTTGCCCACCTTTTAACAAGCTCCCTTAGCATGAACTCATCATGCTTCTCT
 
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JMFS159C10+           CTCAAAGAGGGCAAAACCACTGAGTTGATGTATTCATCAAATGATTCCCTATACTTTTCA
JMFS065H02+           CTCAAAGAGGGCAAAACCACTGAGTTGATGTATTCATCAAATGATTCCCTATACTTTTCA
                      ____________________________________________________________
consensus             CTCAAAGAGGGCAAAACCACTGAGTTGATGTATTCATCAAATGATTCCCTATACTTTTCA
 
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JMFS159C10+           TATAGCTGCTGAGAATAGTCATGGGGTGGTTTCTGCGTGCACATATTATAGATAGTAGTG
JMFS065H02+           TATAGCTGCTGAGAATAGTCATGGGGTGGTTTCTGCGTGCACATATTATAGATAGTAGTG
                      ____________________________________________________________
consensus             TATAGCTGCTGAGAATAGTCATGGGGTGGTTTCTGCGTGCACATATTATAGATAGTAGTG
 
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JMFS159C10+           TAAAGCATCATGTACTCTTCAGAACTAAATGACTCGGGCTGGGCTTCCAATATCCTCTTT
JMFS065H02+           TAAAGCATCATGTACTCTTCAGAACTAAATGACTCGGGCTGGGCTTCCAATATCCTCTTT
                      ____________________________________________________________
consensus             TAAAGCATCATGTACTCTTCAGAACTAAATGACTCGGGCTGGGCTTCCAATATCCTCTTT
 
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JMFS159C10+           AGCTTTGTGATTCCCTTCTGCATACAATCCCATCCTTCTTCCAGTTCTATTGTCTTCATT
JMFS065H02+           AGCTTTGTGATTCCCTTCTGCATAAAATCCCATCCTTCTTCCAGTTCTATTGTCTTCATT
                      ____________________________________________________________
consensus             AGCTTTGTGATTCCCTTCTGCATACAATCCCATCCTTCTTCCAGTTCTATTGTCTTCATT
 
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JMFS159C10+           TGGCTCATTGTCATCTGAACTCAGTTCACTTGTATTTTCTCAAGTACACGGAAGATGGAT
JMFS065H02+           TGGCTCATTGTCATCTGAACTCAGTTCACTTGTATTTTCTCAAGTACACGGAAGATGGAT
JMFF023H22+                            AACTCAGTTCACTTGTATTTTCTCAAGTACACGGAAGATGGAT
                      ____________________________________________________________
consensus             TGGCTCATTGTCATCTGAACTCAGTTCACTTGTATTTTCTCAAGTACACGGAAGATGGAT
 
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JMFS159C10+           TGCGGAACTGCGAAGCGATTCCTAAACAAATGTAGTCTAAAGGGGAAAATCCGGGTCGGG
JMFS065H02+           TGCGGAACTGCGAAGCGATTCCTAAACAAATGTAGTCTAAAGGGGAAAATCCGGGTCGGG
JMFF023H22+           TGCGGAACTGCGAAGCGATTCCTAAACAAATGTAGTCTAAAGGGGAAAATCCGGGTCGGG
                      ____________________________________________________________
consensus             TGCGGAACTGCGAAGCGATTCCTAAACAAATGTAGTCTAAAGGGGAAAATCCGGGTCGGG
 
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JMFS159C10+           TGAAAGAAGCAGAAACCCGAACCCTA                                  
JMFS065H02+           TGAAAGAAGCAGAAACCCGAACCCTATGAATTGCTAGGTCGAGAGTGCCTGTAAAAGTTT
JMFF023H22+           TGAAAGAAGCAGAAACCCGAACCCTATGAATTGCTAGGTCGAGAGTGCCTGTAAAAGTTT
                      ____________________________________________________________
consensus             TGAAAGAAGCAGAAACCCGAACCCTATGAATTGCTAGGTCGAGAGTGCCTGTAAAAGTTT
 
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JMFS065H02+           GTTGGTATTGGTAATATAGGAATTGAAGGGAGAACGAAAGGGCTCGGAGACCGGAGAGAG
JMFF023H22+           GTTGGTATTGGTAATATAGGAATTGAAGGGAGAACGAAAGGGCTCGGAGACCGGAGAGAG
                      ____________________________________________________________
consensus             GTTGGTATTGGTAATATAGGAATTGAAGGGAGAACGAAAGGGCTCGGAGACCGGAGAGAG
 
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JMFS065H02+           TGCTGAAAGCGACAGGCGGTTCAATCAGA                               
JMFF023H22+           TGCTGAAAGCGACAGGCGGTTCAATCAGAGTCGTCGTCTGACTGGTCTGGAACGAGTGGC
                      ____________________________________________________________
consensus             TGCTGAAAGCGACAGGCGGTTCAATCAGAGTCGTCGTCTGACTGGTCTGGAACGAGTGGC