Contig 001676:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF023F20Sequence487001676 (3)ref|XP_009629843.1|6e-19PREDICTED: U-box domain-containing protein 33 isoform X2 [Nicotiana tomentosifo774000355 (3)ref|XP_009629845.1|8e-116PREDICTED: U-box domain-containing protein 33 isoform X4 [Nicotiana tomentosifo
JMFF024B10Sequence481001676 (3)ref|XP_009629843.1|2e-20PREDICTED: U-box domain-containing protein 33 isoform X2 [Nicotiana tomentosifo
JMFS014H06Sequence621001676 (3)ref|XP_009629842.1|5e-55PREDICTED: U-box domain-containing protein 33 isoform X1 [Nicotiana tomentosifo

Alignment

This contig is upended


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JMFS014H06+                                                TCCACTATGCCCTTCTCAATAGA
                      ____________________________________________________________
consensus                                                  TCCACTATGCCCTTCTCAATAGA
 
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JMFS014H06+           GTCCGTCTCAATGTAGAGTCTGTCCACCTGAGCCCCTGCTCGGCCACAGATGAGAAGATA
                      ____________________________________________________________
consensus             GTCCGTCTCAATGTAGAGTCTGTCCACCTGAGCCCCTGCTCGGCCACAGATGAGAAGATA
 
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JMFS014H06+           TTTGTCCAAAATCTTGTAAGTTTCTTGCCTCTCTTTATCATGGTATGCTTTAACTTGATG
                      ____________________________________________________________
consensus             TTTGTCCAAAATCTTGTAAGTTTCTTGCCTCTCTTTATCATGGTATGCTTTAACTTGATG
 
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JMFS014H06+           TTCTTCCAGCTGGTCAATACTAAATTTTGTACCCATCATTGGGATTTTCTGAGCTGGAGT
JMFF024B10+                                                                CTGGAGT
JMFF023F20+                                                                CTGGAGT
                      ____________________________________________________________
consensus             TTCTTCCAGCTGGTCAATACTAAATTTTGTACCCATCATTGGGATTTTCTGAGCTGGAGT
 
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JMFS014H06+           GTGAACATGAAGAATGCAAAGTTTCCTCCCTCCAGAGTTATGCAAAGCCCAAGCTATAGT
JMFF024B10+           GTGAACATGAAGAATGCAAAGTTTCCTCCCTCCAGAGTTATGCAAAGCCCAAGCTATAGT
JMFF023F20+           GTGAACATGAAGAATGCAAAGTTTCCTCCCTCCAGAGTTATGCAAAGCCCAAGCTATAGT
                      ____________________________________________________________
consensus             GTGAACATGAAGAATGCAAAGTTTCCTCCCTCCAGAGTTATGCAAAGCCCAAGCTATAGT
 
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JMFS014H06+           GTATTCACTCTCTTTAACTTCCTTCCCCACCGCGACATACAACGTATCATCGGAAACTCT
JMFF024B10+           GTATTCACTCTCTTTAACTTCCTTCCCCACCGCGACATACAACGTATCATCGGAAACTCT
JMFF023F20+           GTATTCACTCTCTTTAACTTCCTTCCCCACCGCGACATACAACGTATCATCGGAAACTCT
                      ____________________________________________________________
consensus             GTATTCACTCTCTTTAACTTCCTTCCCCACCGCGACATACAACGTATCATCGGAAACTCT
 
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JMFS014H06+           CGCCGGCGTGGCCGTTGACGGACTCGGCGACAGCTCGACAATTTCACTGCTACCACCGGC
JMFF024B10+           CGCCGGCGTGGCCGTTGACGGACTCGGCGACAGCTCGACAATTTCACTGCTACCACCGGC
JMFF023F20+           CGCCGGCGTGGCCGTTGACGGACTCGGCGACAGCTCGACAATTTCACTGCTACCACCGGC
                      ____________________________________________________________
consensus             CGCCGGCGTGGCCGTTGACGGACTCGGCGACAGCTCGACAATTTCACTGCTACCACCGGC
 
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JMFS014H06+           GCCACCCAAATTCAGACCCGACATGTCAACATCCGGGTACCGAATCGGACTTCGAGAAAT
JMFF024B10+           GCCACCCAAATTCAGACCCGACATGTCAACATCCGGGTACCGAATCGGACTTCGCGAAAT
JMFF023F20+           GCCACCCAAATTCAGACCCGACATGTCAACATCCGGGTACCGAATCGGACTTCGCGAAAT
                      ____________________________________________________________
consensus             GCCACCCAAATTCAGACCCGACATGTCAACATCCGGGTACCGAATCGGACTTCGCGAAAT
 
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JMFS014H06+           TAAGGGCGTAGATGTTCCCAACGCCATAAAAAATCACTACACAATTAAATCAAAACTCAA
JMFF024B10+           TAAGGGCGTAGATGTTCCCAACGCCATAAAAAATCACTACACAATTAAATCAAAACTCAA
JMFF023F20+           TAAGGGCGTAGATGTTCCCAACGCCATAAAAAATCACTACACAATTAAATCAAAACTCAA
                      ____________________________________________________________
consensus             TAAGGGCGTAGATGTTCCCAACGCCATAAAAAATCACTACACAATTAAATCAAAACTCAA
 
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JMFS014H06+           CACTACTAACATATGTGCATTATCTACACACGCAAACTGCAAACATGTGTGTGTACACTG
JMFF024B10+           CACTACTAACATATGTGCATTATCTACACACGCAAACTGCAAACATGTGTGTGTACACTG
JMFF023F20+           CACTACTAACATATGTGCATTATCTACACACGCAAACTGCAAACATGTGTGTGTACACTG
                      ____________________________________________________________
consensus             CACTACTAACATATGTGCATTATCTACACACGCAAACTGCAAACATGTGTGTGTACACTG
 
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JMFS014H06+           GGTTTTGGGCTGGGATAACGAAACCCCATGATATACAGAGGAAGGCTGAAGATTAAAG  
JMFF024B10+           GGTTTTGGGCTGGGATAACGAAACCCCATGATATTCAGAGGAAGGCTGAAGATTAAAGAG
JMFF023F20+           GGTTTTGGGCTGGGATAACGAAACCCCATGATATTCAGAGGAAGGCTGAAGATTAAAGAG
                      ____________________________________________________________
consensus             GGTTTTGGGCTGGGATAACGAAACCCCATGATATTCAGAGGAAGGCTGAAGATTAAAGAG
 
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JMFF024B10+           ATGAAATTGAGGAGAAGAAAAGGAGAGATGTGTAGCGCAAAGTCAAG             
JMFF023F20+           ATGAAATTGAGGAGAAGAAAAGGAGAGATGTGTAGCGCAAAGTCAAGTCTACCATGAAAT
                      ____________________________________________________________
consensus             ATGAAATTGAGGAGAAGAAAAGGAGAGATGTGTAGCGCAAAGTCAAGTCTACCATGAAAT