| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF011P17 | Sequence | 416 | 001674 (10) | ref|XP_009758123.1| | 2e-19 | PREDICTED: transmembrane emp24 domain-containing protein p24delta7 [Nicotiana s | 731 | 001674 (10) | ref|XP_009767548.1| | 7e-84 | PREDICTED: transmembrane emp24 domain-containing protein p24delta9-like [Nicoti |
| JMFF017C08 | Sequence | 137 | 001674 (10) | 721 | 001674 (10) | ref|XP_009767548.1| | 6e-83 | PREDICTED: transmembrane emp24 domain-containing protein p24delta9-like [Nicoti | |||
| JMFF018G07 | Sequence | 135 | 001674 (10) | 716 | 001674 (10) | ref|XP_009767548.1| | 2e-83 | PREDICTED: transmembrane emp24 domain-containing protein p24delta9-like [Nicoti | |||
| JMFF023D13 | Sequence | 292 | 001674 (10) | 675 | 001674 (10) | ref|XP_009767548.1| | 1e-82 | PREDICTED: transmembrane emp24 domain-containing protein p24delta9-like [Nicoti | |||
| JMFN038L08 | Sequence | 441 | 001674 (10) | ref|XP_006292548.1| | 9e-09 | hypothetical protein CARUB_v10018783mg [Capsella rubella] gb|EOA25446.1| hypothe | |||||
| JMFS102H09 | Sequence | 627 | 001674 (10) | ref|XP_009767548.1| | 1e-83 | PREDICTED: transmembrane emp24 domain-containing protein p24delta9-like [Nicoti | |||||
This contig is upended
. : . : . : . : . : . :
JMFN038L08+ AAAACGCGGCCCCGGGGGGCGGGGTAATTGGCC
____________________________________________________________
consensus AAAACGCGGCCCCGGGGGGCGGGGTAATTGGCC
. : . : . : . : . : . :
JMFN038L08+ CCCCTTTGGGGGGAATGGGGTCCCGGCCCCCCCCCGGGGGXXXXXXXXXXXXXXXXXXXX
____________________________________________________________
consensus CCCCTTTGGGGGGAATGGGGTCCCGGCCCCCCCCCGGGGGNNNNNNNNNNNNNNNNNNNN
. : . : . : . : . : . :
JMFN038L08+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
____________________________________________________________
consensus NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
. : . : . : . : . : . :
JMFN038L08+ XXXXXXXXXXGACACTGAAAACATTGAAGCTATATTAAAATCTGTAATTGAAATGGATCC
rJMFF017C08- GTAATTGAAATGGATCC
rJMFF018G07- GTAATTGAAATGGATCC
rJMFF011P17- GTAATTGAAATGGATCC
____________________________________________________________
consensus NNNNNNNNNNGACACTGAAAACATTGAAGCTATATTAAAATCTGTAATTGAAATGGATCC
. : . : . : . : . : . :
JMFN038L08+ TAAAATGTGTGGTTTTCCTCTATCGATTGATGTAAATACTGTACATTAGCAAAGACAGGC
rJMFF017C08- TAAAATGTGTGGTTTTCCTCTATCGATTGATGTAAATACTGTACATTAGCAAAGACAGGC
rJMFF023D13- GTGGTTTTCCTCTATCGATTGATGTAAATACTGTACNTTAGCAANGACAGGC
rJMFF018G07- TAAAATGTGTGGTTTTCCTCTATCGATTGATGTAAATACTGTACATTAGCAAAGACAGGC
rJMFF011P17- TAAAATGTGTGGTTTTCCTCTATCGATTGATGTAAATACTGTACATTAGCAAAGACAGGC
____________________________________________________________
consensus TAAAATGTGTGGTTTTCCTCTATCGATTGATGTAAATACTGTACATTAGCAAAGACAGGC
. : . : . : . : . : . :
JMFN038L08+ TATTGGGGTATTCTCAGAGAAAGAAGTGAATTAGATGAGCTTCTTCTTCTGGAAATAGGT
rJMFF017C08- TATTGGGGTATTCTCAGAGAAAGAAGTGAATTAGATGAGCTTCTTCTTCTGGAAATAGGT
rJMFF023D13- TATTGGGGTATTCTCAGAGAAAGAAGTGAATTAGATGAGCTTCTTCTTCTGGAAATAGGT
rJMFF018G07- TATTGGGGTATTCTCAGAGAAAGAAGTGAATTAGATGAGCTTCTTCTTCTGGAAATAGGT
rJMFF011P17- TATTGGGGTATTCTCAGAGAAAGAAGTGAATTANATGAGCTTCTTCTTCTGGAAATAGGT
JMFS102H09+ AATTAGATGAGCTTCTTCTTCTGGAAATAGGT
____________________________________________________________
consensus TATTGGGGTATTCTCAGAGAAAGAAGTGAATTAGATGAGCTTCTTCTTCTGGAAATAGGT
. : . : . : . : . : . :
JMFN038L08+ TTTCAGATGCCAATACTGCATTCCTGCCACAGAGAGGACTACAATAATCGACACGCCACT
rJMFF017C08- TTTCAGATGCCAATACTGCATTCCTGCCACAGAGAGGACTACAATAATCGACACGCCACT
rJMFF023D13- TTTCAGATGCCAATACTGCATTCCTGCCACAGAGAGGACTACAATAATCGACACGCCACT
rJMFF018G07- TTTCAGATGCCAATACTGCATTCCTGCCACAGAGAGGACTACAATAATCGACACGCCACT
rJMFF011P17- TTTCAGATGCCAATACTGCATTCCTGCCACAGAGAGGACTACAATAATCGACACGCCACT
JMFS102H09+ TTTCAGATGCCAATACTGCATTCCTGCCACAGAGAGGACTACAATAATCGACACGCCACT
____________________________________________________________
consensus TTTCAGATGCCAATACTGCATTCCTGCCACAGAGAGGACTACAATAATCGACACGCCACT
. : . : . : . : . : . :
JMFN038L08+ CAGCCAACCCATGCTCGAGTTGGTAGATCGGTTAAGTTCCTGCATTTC
rJMFF017C08- CAGCCAACCCATGCTCGAGTTGGTAGATCGGTTAAGTTCCTGCATTTCTTCTTCTCTTTC
rJMFF023D13- CAGCCAACCCATGCTCGAGTTGGTANATCGGTTAAGTTCCTGCATTTCTTCTTCTCTTTC
rJMFF018G07- CAGCCAACCCATGCTCGAGTTGGTAGATCGGTTAAGTTCCTGCATTTCTTCTTCTCTTTC
rJMFF011P17- CAGCCAACCCATGCTCGAGTTGGTAGATCGGTTAAGTTCCTGCATTTCTTCTTCTCTTTC
JMFS102H09+ CAGCCAACCCATGCTCGAGTTGGTAGATCGGTTAAGTTCCTGCATTTCTTCTTCTCTTTC
____________________________________________________________
consensus CAGCCAACCCATGCTCGAGTTGGTAGATCGGTTAAGTTCCTGCATTTCTTCTTCTCTTTC
. : . : . : . : . : . :
rJMFF017C08- ACGAAGATATTGCATCTCACTTTGGATGTCGAAAACAGTTAGATACATATTCCTGAGTTG
rJMFF023D13- ACGAAGATATTGCATCTCACTTTGGATGTCGAAAACAGTTAGATACATATTCCTGAGTTG
rJMFF018G07- ACGAAGATATTGCATCTCACTTTGGATGTCGAAAACAGTTAGATACATATTCCTGAGTTG
rJMFF011P17- ACGAAGATATTGCATCTCACTTTGGATGTCGAAAACAGTTAGATACATATTCCTGAGTTG
JMFS102H09+ ACGAAGATATTGCATCTCACTTTGGATGTCGAAAACAGTTAGATACATATTCCTGAGTTG
____________________________________________________________
consensus ACGAAGATATTGCATCTCACTTTGGATGTCGAAAACAGTTAGATACATATTCCTGAGTTG
. : . : . : . : . : . :
rJMFF017C08- TGATTCCATAGCTTCAACAGAGTCTTTCTTTACAACACTAGCCATATCCTTAGTAAGTAC
rJMFF023D13- TGATTCCATAGCTTCAACAGAGTCTTTCTTTACAACACTAGCCATATCCTTAGTAAGTAC
rJMFF018G07- TGATTCCATAGCTTCAACAGAGTCTTTCTTTACAACACTAGCCATATCCTTAGTAAGTAC
rJMFF011P17- TGATTCCATAGCTTCAACAGAGTCTTTCTTTACAACACTAGCCATATCCTTAGTAAGTAC
JMFS102H09+ TGATTCCATAGCTTCAACAGAGTCTTTCTTTACAACACTAGCCATATCCTTAGTAAGTAC
____________________________________________________________
consensus TGATTCCATAGCTTCAACAGAGTCTTTCTTTACAACACTAGCCATATCCTTAGTAAGTAC
. : . : . : . : . : . :
rJMFF017C08- ACCAGACTTCCACTCCAATTCAATAGGAAATGTAATCGGGGGACTGTTATCAGCAGCATA
rJMFF023D13- ACCAGACTTCCACTCCAATTCAATAGGAAATGTAATCGGGGGACTGTTATCAGCAGCATA
rJMFF018G07- ACCAGACTTCCACTCCAATTCAATAGGAAATGTAATCGGGGGACTGTTATCAGCAGCATA
rJMFF011P17- ACCAGACTTCCACTCCAATTCAATAGGAAATGTAATCGGGGGACTGTTATCAGCAGCATA
JMFS102H09+ ACCAGACTTCCACTCCAATTCAATAGGAAATGTAATCGGGGGACTGTTATCAGCAGCATA
____________________________________________________________
consensus ACCAGACTTCCACTCCAATTCAATAGGAAATGTAATCGGGGGACTGTTATCAGCAGCATA
. : . : . : . : . : . :
rJMFF017C08- GAAGCAAGCCGTGTAGTCCCCGGATTCTGCAGTCTGAAAAGCAAAGGTCCCTTCGGACAC
rJMFF023D13- GAAGCAAGCCGTGTAGTCCCCGGATTCTGCAGTCTGAAAAGCAAAGGTCCCTTCGGACAC
rJMFF018G07- GAAGCAAGCCGTGTAGTCCCCGGATTCTGCAGTCTGAAAAGCAAAGGTCCCTTCGGACAC
rJMFF011P17- GAAGCAAGCCGTGTAGTCCCCGGATTCTGCAGTCTGAAAAGCAAAGGTCCCTTCGGACAC
JMFS102H09+ GAAGCAAGCCGTGTAGTCCCCGGATTCTGCAGTCTGAAAAGCAAAGGTCCCTTCGGACAC
____________________________________________________________
consensus GAAGCAAGCCGTGTAGTCCCCGGATTCTGCAGTCTGAAAAGCAAAGGTCCCTTCGGACAC
. : . : . : . : . : . :
rJMFF017C08- ATAGGAGGCATAGTGATAACTATTTCCATAGGTAGATGTCACCTGAATGATGAAAGTGTG
rJMFF023D13- ATAGGAGGCATAGTGATAACTATTTCCATAGGTAGATGTCACCTGAATGATGAAAGTGTG
rJMFF018G07- ATAGGAGGCATAGTGATAACTATTTCCATAGGTAGATGTCACCTGAATGATGAAAGTGTG
rJMFF011P17- ATAGGAGGCATAGTGATAACTATTTCCATAGGTAGATGTCACCTGAATGATGAAAGTGTG
JMFS102H09+ ATAGGAGGCATAGTGATAACTATTTCCATAGGTAGATGTCACCTGAATGATGAAAGTGTG
JMFF011P17+ GGCATAGNGATAACTATTTCCATAGGTAGATGTCCCCTGAATGANGAAAGTGTG
____________________________________________________________
consensus ATAGGAGGCATAGTGATAACTATTTCCATAGGTAGATGTCACCTGAATGATGAAAGTGTG
. : . : . : . : . : . :
rJMFF017C08- AGTGTCGGGTAAAGGGTGGCCTTCGTGGGGGTTGATTGCGTGGTACTTGCCGACGGTCAT
rJMFF023D13- AGTGTCGGGTAAAGGGTGGCCTTCGTGGGGGTTGATTGCGTGGTACTTGCCGACGGTCAT
rJMFF018G07- AGTGTCGGGTAAAGGGTGGCCTTCGTGGGGGTTGATTGCGTGGTACTTGCCGACGGTCAT
rJMFF011P17- AGTGTCGGGTAAAGGGTGGCCTTCGTGGGGGTTGATTGCGTGGTACTTGCCGACGGTCAT
JMFS102H09+ AGTGTCGGGTAAAGGGTGGCCTTCGTGGGGGTTGATTGCGTGGTACTTGCCGACGGTCAT
JMFF011P17+ AGTNTCGGGTAAAGGGTGGCCTTNGNGGGGGTTGATTGCGTGGTACTTGCCGACGGTCAN
____________________________________________________________
consensus AGTGTCGGGTAAAGGGTGGCCTTCGTGGGGGTTGATTGCGTGGTACTTGCCGACGGTCAT
. : . : . : . : . : . :
rJMFF017C08- GGCGCCGCCCTTAATATCTTCAGATATGCATTTGGTACTGCCGGATTCAACATTGAAACG
rJMFF023D13- GGCGCCGCCCTTAATATCTTCAGATATGCATTTGGTACTGCCGGATTCAACATTGAAACG
rJMFF018G07- GGCGCCGCCCTTAATATCTTCAGATATGCATTTGGTACTGCCGGATTCAACATTGAAACG
rJMFF011P17- GGCGCCGCCCTTAATATCTTCAGATATGCATTTGGTACTGCCGGATTCAACATTGAAACG
JMFS102H09+ GGCGCCGCCCTTAATATCTTCAGATATGCATTTGGTACTGCCGGATTCAACATTGAAACG
JMFF011P17+ GGCNCCNCCCTTAATATNTTCAGATANGCATTTGGTACTGCCGGATTCAACNTTGAAACG
JMFF023D13+ CCCTTAATATNTTCAGATATGCATTTGGTACTGCCGGATTCAACATTGAAACG
____________________________________________________________
consensus GGCGCCGCCCTTAATATCTTCAGATATGCATTTGGTACTGCCGGATTCAACATTGAAACG
. : . : . : . : . : . :
rJMFF017C08- GAAGGAGTGAATCTGGG
rJMFF023D13- GAAGGAGTGAATCTGGGTCGAGA
rJMFF018G07- GAAGGAGTGAATCTGGGTCGAGAA
rJMFF011P17- GAAGGAGTGAATCTGGGTCGAGAAGATG
JMFS102H09+ GAAGGAGTGAATCTGGGTCGAGAAGATG
JMFF011P17+ GAAGGAGTGAATTTGGGTNGAGAAGATGGCCNAGATGAGAAGGAGATAGAGGGCATAACC
JMFF023D13+ GAAGGAGTGAATNTGGGTCGAGAAGATGGCCAAGATGAGAAGGAGATAGAGGGCATAACC
____________________________________________________________
consensus GAAGGAGTGAATCTGGGTCGAGAAGATGGCCAAGATGAGAAGGAGATAGAGGGCATAACC
. : . : . : . : . : . :
JMFF011P17+ TTCCGGNCCCATTTNGGATTTTATTTTTNTTAATAANTANTAANTTTTTTTTTTATTTTT
JMFF018G07+ TTTTTTTTTTATTTTT
JMFF017C08+ TTTTTTTTTTATTTTT
JMFF023D13+ TTCCGGACCCATTTCGGATTTTATTNTTNTTAATAATTATTAA-TTTTTTTTTTTATTTT
____________________________________________________________
consensus TTCCGGACCCATTTCGGATTTTATTTTTNTTAATAATTATTAANTTTTTTTTTTATTTTT
. : . : . : . : . : . :
JMFF011P17+ TTTTTGGATTTCTCTCCCTCTCTTCTGCTAGAAATCTCTAGGAGAAGAGAAACAGGGAGG
JMFF018G07+ TTTTTGGATTTCTCTCCCTCTCTTCTGCTAGAAATCTCTAGGAGAAGAGAAACAGGGAGG
JMFF017C08+ TTTTTGGATTTCTCTCCCTCTCTTCTGCTAGAAATCTCTAGGAGAAGAGAAACAGGGAGG
JMFF023D13+ TTTTTGGATTTCTCTCCCTCTCTTCTGCTAGAAATCTCTAGGAGAAGAGAAACAGGGAGG
____________________________________________________________
consensus TTTTTGGATTTCTCTCCCTCTCTTCTGCTAGAAATCTCTAGGAGAAGAGAAACAGGGAGG
. : . : . : . : . : . :
JMFF011P17+ GATGGTGATGAAGACGATGGCCGGCGGTGTTATGAGGATTCTATTATTGAAATTTCTAC
JMFF018G07+ GATGGTGATGAAGACGATGGCCGGCGGTGTTATGAGGATTCTATTATTGAAATTTCTAC
JMFF017C08+ GATGGTGATGAAGACGATGGCCGGCGGTGTTATGAGGATTCTATTATTGAAATTTCTAC
JMFF023D13+ GATGGTGATGAAGACGATGGCCGGCGGTGTTATGAGGATTCTATTATTGAAATTTCTACT
____________________________________________________________
consensus GATGGTGATGAAGACGATGGCCGGCGGTGTTATGAGGATTCTATTATTGAAATTTCTACT