Contig 001669:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022A23Sequence521001669 (7)ref|XP_007044696.1|5e-42RNA polymerases N / 8 kDa subunit [Theobroma cacao] gb|EOY00528.1| RNA polymeras477001669 (7)ref|XP_007044696.1|3e-42RNA polymerases N / 8 kDa subunit [Theobroma cacao] gb|EOY00528.1| RNA polymeras
JMFF040B15Sequence521001669 (7)ref|XP_007044696.1|5e-42RNA polymerases N / 8 kDa subunit [Theobroma cacao] gb|EOY00528.1| RNA polymeras474001669 (7)ref|XP_007044696.1|3e-42RNA polymerases N / 8 kDa subunit [Theobroma cacao] gb|EOY00528.1| RNA polymeras
JMSF009F23Sequence374015679gb|ABY85198.2|6e-60mitogen activated protein kinase 1 [Datura metel]131001669 (7)ref|XP_007044696.1|9e-09RNA polymerases N / 8 kDa subunit [Theobroma cacao] gb|EOY00528.1| RNA polymeras
JMSF047P07Sequence502001669 (7)ref|XP_007044696.1|3e-42RNA polymerases N / 8 kDa subunit [Theobroma cacao] gb|EOY00528.1| RNA polymeras448001669 (7)ref|XP_007044696.1|2e-42RNA polymerases N / 8 kDa subunit [Theobroma cacao] gb|EOY00528.1| RNA polymeras

Alignment

This contig is upended


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JMFF040B15-                              CCGCACGCCCTGCGCTCCCTAGTCCCCCTACCCAGAGCTCC
JMSF047P07-                                                   GTCCCCCTACCCAGAGCTCC
rJMFF022A23+                             CCGCACGCCCTGCGCTCCCTAGTCCCCCTACCCAGAGCTCC
rJMFF040B15+                             CCGCACGCCCTGCGCTCCCTAGTCCCCCTACCCAGAGCTCC
rJMSF047P07+                                                  GTCCCCCTACCCAGAGCTCC
JMFF022A23-                              CCGCACGCCCTGCGCTCCCTAGTCCCCCTACCCAGAGCTCC
                      ____________________________________________________________
consensus                                CCGCACGCCCTGCGCTCCCTAGTCCCCCTACCCAGAGCTCC
 
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JMFF040B15-           AAACTAGGGCAAGCACCACTTGTTTCTTCTGCACCCTCGAACCCGCTTCTTCTCCACGGT
JMSF047P07-           AAACTAGGGCAAGCACCACTTGTTTCTTCTGCACCCTCGAACCCGCTTCTTCTCCACGGT
rJMFF022A23+          AAACTAGGGCAAGCACCACTTGTTTCTTCTGCACCCTCGAACCCGCTTCTTCTCCACGGT
rJMFF040B15+          AAACTAGGGCAAGCACCACTTGTTTCTTCTGCACCCTCGAACCCGCTTCTTCTCCACGGT
rJMSF047P07+          AAACTAGGGCAAGCACCACTTGTTTCTTCTGCACCCTCGAACCCGCTTCTTCTCCACGGT
rJMSF009F23+                                                                   GGT
JMFF022A23-           AAACTAGGGCAAGCACCACTTGTTTCTTCTGCACCCTCGAACCCGCTTCTTCTCCACGGT
                      ____________________________________________________________
consensus             AAACTAGGGCAAGCACCACTTGTTTCTTCTGCACCCTCGAACCCGCTTCTTCTCCACGGT
 
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JMFF040B15-           TCCAAACTAGGCCAGCGGCGAAGATGATAATTCCAGTACGTTGCTTCACCTGTGGAAAGG
JMSF047P07-           TCCAAACTAGGCCAGCGGCGAAGATGATAATTCCAGTACGTTGCTTCACCTGTGGAAAGG
rJMFF022A23+          TCCAAACTAGGCCAGCGGCGAAGATGATAATTCCAGTACGTTGCTTCACCTGTGGAAAGG
rJMFF040B15+          TCCAAACTAGGCCAGCGGCGAAGATGATAATTCCAGTACGTTGCTTCACCTGTGGAAAGG
rJMSF047P07+          TCCAAACTAGGCCAGCGGCGAAGATGATAATTCCAGTACGTTGCTTCACCTGTGGAAAGG
rJMSF009F23+          TNCAAAATAGGCCAGNGGNGAAGANGATAATTCCAGTACGTNGCTTCACCTGNNGAAAGG
JMFF022A23-           TCCAAACTAGGCCAGCGGCGAAGATGATAATTCCAGTACGTTGCTTCACCTGTGGAAAGG
                      ____________________________________________________________
consensus             TCCAAACTAGGCCAGCGGCGAAGATGATAATTCCAGTACGTTGCTTCACCTGTGGAAAGG
 
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JMFF040B15-           TAATAGGAAACAAATGGGACGAGTATCTCGATCTTCTCCAAGCCGATTACACTGAAGGGG
JMSF047P07-           TAATAGGAAACAAATGGGACGAGTATCTCGATCTTCTCCAAGCCGATTACACTGAAGGGG
rJMFF022A23+          TAATAGGAAACAAATGGGACGAGTATCTCGATCTTCTCCAAGCCGATTACACTGAAGGGG
rJMFF040B15+          TAATAGGAAACAAATGGGACGAGTATCTCGATCTTCTCCAAGCCGATTACACTGAAGGGG
rJMSF047P07+          TAATAGGAAACAAATGGGACGAGTATCTCGATCTTCTCCAAGCCGATTACACTGAAGGGG
rJMSF009F23+          TAATAGGAAACAAATGGGNCGNGTATNTCGATCNTCTNCAAGCGGATTACACTGANGGGG
JMFF022A23-           TAATAGGAAACAAATGGGACGAGTATCTCGATCTTCTCCAAGCCGATTACACTGAAGGGG
                      ____________________________________________________________
consensus             TAATAGGAAACAAATGGGACGAGTATCTCGATCTTCTCCAAGCCGATTACACTGAAGGGG
 
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JMFF040B15-           ATGCACTTGATGCTTTGGGTTTGGTTCGCTACTGCTGCCGAAGAATGCTGATGACCCATG
JMSF047P07-           ATGCACTTGATGCTTTGGGTTTGGTTCGCTACTGCTGCCGAAGAATGCTGATGACCCATG
rJMFF022A23+          ATGCACTTGATGCTTTGGGTTTGGTTCGCTACTGCTGCCGAAGAATGCTGATGACCCATG
rJMFF040B15+          ATGCACTTGATGCTTTGGGTTTGGTTCGCTACTGCTGCCGAAGAATGCTGATGACCCATG
rJMSF047P07+          ATGCACTTGATGCTTTGGGTTTGGTTCGCTACTGCTGCCGAAGAATGCTGATGACCCATG
rJMSF009F23+          AT                                                          
JMFF022A23-           ATGCACTTGATGCTTTGGGTTTGGTTCGCTACTGCTGCCGAAGAATGCTGATGACCCATG
                      ____________________________________________________________
consensus             ATGCACTTGATGCTTTGGGTTTGGTTCGCTACTGCTGCCGAAGAATGCTGATGACCCATG
 
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JMFF040B15-           TTGATCTTATTGAAAAGCTGCTGAACTACAACACTTTGGAGAAAGCTGATGGCAGCTGAT
JMSF047P07-           TTGATCTTATTGAAAAGCTGCTGAACTACAACACTTTGGAGAAAGCTGATGGCAGCTGAT
rJMFF022A23+          TTGATCTTATTGAAAAGCTGCTGAACTACAACACTTTGGAGAAAGCTGATGGCAGCTGAT
rJMFF040B15+          TTGATCTTATTGAAAAGCTGCTGAACTACAACACTTTGGAGAAAGCTGATGGCAGCTGAT
rJMSF047P07+          TTGATCTTATTGAAAAGCTGCTGAACTACAACACTTTGGAGAAAGCTGATGGCAGCTGAT
JMFF022A23-           TTGATCTTATTGAAAAGCTGCTGAACTACAACACTTTGGAGAAAGCTGATGGCAGCTGAT
                      ____________________________________________________________
consensus             TTGATCTTATTGAAAAGCTGCTGAACTACAACACTTTGGAGAAAGCTGATGGCAGCTGAT
 
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JMFF040B15-           TAAAACATTTTTGGAAGTGGCTAATGTGCAAGTCTTATCCTTGTGTGTGGGTAGTTGATT
JMSF047P07-           TAAAACATTTTTGGAAGTGGCTAATGTGCAAGTCTTATCCTTGTGTGTGGGTAGTTGATT
rJMFF022A23+          TAAAACATTTTTGGAAGTGGCTAATGTGCAAGTCTTATCCTTGTGTGTGGGTAGTTGATT
rJMFF040B15+          TAAAACATTTTTGGAAGTGGCTAATGTGCAAGTCTTATCCTTGTGTGTGGGTAGTTGATT
rJMSF047P07+          TAAAACATTTTTGGAAGTGGCTAATGTGCAAGTCTTATCCTTGTGTGTGGGTAGTTGATT
JMFF022A23-           TAAAACATTTTTGGAAGTGGCTAATGTGCAAGTCTTATCCTTGTGTGTGGGTAGTTGATT
                      ____________________________________________________________
consensus             TAAAACATTTTTGGAAGTGGCTAATGTGCAAGTCTTATCCTTGTGTGTGGGTAGTTGATT
 
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JMFF040B15-           GATATGAGAACTTATCTAACTTCTGTGCATTTATTCAAGATTTCTAGTTTGTAATATAAC
JMSF047P07-           GATATGAGAACTTATCTAACTTCTGTGCATTTATTCAAGATTTCTAGTTTGTAATATAAC
rJMFF022A23+          GATATGAGAACTTATCTAACTTCTGTGCATTTATTCAAGATTTCTAGTTTGTAATATAAC
rJMFF040B15+          GATATGAGAACTTATCTAACTTCTGTGCATTTATTCAAGATTTCTAGTTTGTAATATAAC
rJMSF047P07+          GATATGAGAACTTATCTAACTTCTGTGCATTTATTCAAGATTTCTAGTTTGTAATATAAC
JMFF022A23-           GATATGAGAACTTATCTAACTTCTGTGCATTTATTCAAGATTTCTAGTTTGTAATATAAC
                      ____________________________________________________________
consensus             GATATGAGAACTTATCTAACTTCTGTGCATTTATTCAAGATTTCTAGTTTGTAATATAAC
 
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JMFF040B15-           AGACAAGTAACAAAGTGTTTTTGGTAATGGAGTAAACTGACAATTTGCATAAAAAAAAAA
JMSF047P07-           AGACAAGTAACAAAGTGTTTTTGGTAATGGAGTAAACTGACAATTTGCACAAAAAAAAAA
rJMFF022A23+          AGACAAGTAACAAAGT                                            
rJMFF040B15+          AGACAAGTAACAA                                               
rJMSF047P07+          AGACAA                                                      
JMFF022A23-           AGACAAGTAACAAAGTGTTTTTGGTAATGGAGTAAACTGACAATTTGCATAAAAAAAAAA
                      ____________________________________________________________
consensus             AGACAAGTAACAAAGTGTTTTTGGTAATGGAGTAAACTGACAATTTGCATAAAAAAAAAA