Contig 001664:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF020G12+                                                                  ACGC
JMFF020G12-                                                 GGTGTGAGCGGAGACGCGACGC
                      ____________________________________________________________
consensus                                                   GGTGTGAGCGGAGACGCGACGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF020G12+          GAAAATGCAGATCTTTGTGAAGACCCTGACGGGGAAGACGATAACCCTAGAGGTCGAGTC
JMFF020G12-           GAAAATGCAGATCTTTGTGAAGACCCTGACGGGGAAGACGATAACCCTAGAGGTCGAGTC
                      ____________________________________________________________
consensus             GAAAATGCAGATCTTTGTGAAGACCCTGACGGGGAAGACGATAACCCTAGAGGTCGAGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF020G12+          ATCGGACACCATTGACAATGTGAAGGCGAAAATCCAGGACAAGGAGGGCATCCCACCAGA
JMFF020G12-           ATCGGACACCATTGACAATGTGAAGGCGAAAATCCAGGACAAGGAGGGCATCCCACCAGA
                      ____________________________________________________________
consensus             ATCGGACACCATTGACAATGTGAAGGCGAAAATCCAGGACAAGGAGGGCATCCCACCAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF020G12+          CCAGCAACGCCTCATCTTCGCCGGAAAGTAGCTCGAGGACGGGCGCACCCTTGCAGACTA
JMFF020G12-           CCAGCAACGCCTCATCTTCGCCGGAAAGTAGCTCGAGGACGGGCGCACCCTTGCAGACTA
                      ____________________________________________________________
consensus             CCAGCAACGCCTCATCTTCGCCGGAAAGTAGCTCGAGGACGGGCGCACCCTTGCAGACTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF020G12+          CAACATCCAAAAGGATTCTACCCTCCACCTCGTCCTTCGCCTCCGCGGCGGGGCAAAGAA
JMFF020G12-           CAACATCCAAAAGGATTCTACCCTCCACCTCGTCCTTCGCCTCCGCGGCGGGGCAAAGAA
                      ____________________________________________________________
consensus             CAACATCCAAAAGGATTCTACCCTCCACCTCGTCCTTCGCCTCCGCGGCGGGGCAAAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF020G12+          GCGCAAGAAGAAGACATACACGAAGCCCAAAAAGATTAAGCACAAACACAAGAAGGTGAA
JMFF020G12-           GCGCAAGAAGAAGACATACACGAAGCCCAAAAAGATTAAGCACAAACACAAGAAGGTGAA
                      ____________________________________________________________
consensus             GCGCAAGAAGAAGACATACACGAAGCCCAAAAAGATTAAGCACAAACACAAGAAGGTGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF020G12+          GCTCGCCGTCTTGCAGTTCTACAAGGTTGATGATTCTGGAAAAGTACAGAGGCTCCGTAA
JMFF020G12-           GCTCGCCGTCTTGCAGTTCTACAAGGTTGATGATTCTGGAAAAGTACAGAGGCTCCGTAA
                      ____________________________________________________________
consensus             GCTCGCCGTCTTGCAGTTCTACAAGGTTGATGATTCTGGAAAAGTACAGAGGCTCCGTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF020G12+          AGAGTGCCCCAACGCGGAGTGCGGTGCTGGCACATTCATGGCCAACCATTTTGACAGGCA
JMFF020G12-           AGAGTGCCCCAACGCGGAGTGCGGTGCTGGCACATTCATGGCCAACCATTTTGACAGGCA
                      ____________________________________________________________
consensus             AGAGTGCCCCAACGCGGAGTGCGGTGCTGGCACATTCATGGCCAACCATTTTGACAGGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF020G12+          CTACTGTGGCAAATGTGGGCTTACCTATGTCTA                           
JMFF020G12-           CTACTGTGGCAAATGTGGGCTTACCTATGTCTATCATAAGGCTGGCGGTGACTGATACTT
                      ____________________________________________________________
consensus             CTACTGTGGCAAATGTGGGCTTACCTATGTCTATCATAAGGCTGGCGGTGACTGATACTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF020G12-           TTCTTCTACTTTCATTTCATTATGAATCCTTTATATAATTTTAGACCGTGATGTTTGGCC
                      ____________________________________________________________
consensus             TTCTTCTACTTTCATTTCATTATGAATCCTTTATATAATTTTAGACCGTGATGTTTGGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF020G12-           GTATAATGGTTTTGAAACTCTTTTGGCTTTTTCCAAATCCTATTTTCCTGCTATATTTTG
                      ____________________________________________________________
consensus             GTATAATGGTTTTGAAACTCTTTTGGCTTTTTCCAAATCCTATTTTCCTGCTATATTTTG