Contig 001663:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF020E16Sequence574001663 (3)ref|XP_009618363.1|3e-12PREDICTED: ocs element-binding factor 1-like [Nicotiana tomentosiformis] gb|AAK9643001663 (3)emb|CDP18250.1|4e-42unnamed protein product [Coffea canephora]
JMFN013K12Sequence534001663 (3)ref|XP_006344760.1|1e-40PREDICTED: ocs element-binding factor 1-like [Solanum tuberosum]

Alignment

This contig is upended


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JMFN013K12+                                      AATAAACAGAAGATTCGGATCAAAAGAGCCACA
rJMFF020E16-                                                       ATCAAAAGAGCCACA
                      ____________________________________________________________
consensus                                        AATAAACAGAAGATTCGGATCAAAAGAGCCACA
 
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JMFN013K12+           GAATAAAGTCAAACAAGCATGTAAAATATGATAGTCATCCTGAAATGGCTACTCAAATTT
rJMFF020E16-          GAATAAAGTCAAACAAGCATGTAAAATATGATAGTCATCCTGAAATGGCTACTCAAATTT
                      ____________________________________________________________
consensus             GAATAAAGTCAAACAAGCATGTAAAATATGATAGTCATCCTGAAATGGCTACTCAAATTT
 
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JMFN013K12+           CAGATCAGTCTATGCTAATATAGCATGTACCCCTGACCGGGG-AAGATGAGCAATGAGTT
rJMFF020E16-          CAGATCAGTCTATGCTAATATAGCATGTACCCCTGACCGGGGCAAGATGAGCAATGAGTT
                      ____________________________________________________________
consensus             CAGATCAGTCTATGCTAATATAGCATGTACCCCTGACCGGGGCAAGATGAGCAATGAGTT
 
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JMFN013K12+           CAGAATTTGAACAAGCCGGAAGAAGCAGGAATGGGAAGAAGCTTTGGGAACAGAATCTGC
rJMFF020E16-          CAGAATTTGAACAAGCCGGAAGAAGCAGGAATGGGAAGAAGCTTTGGGAACAGAATCTGC
                      ____________________________________________________________
consensus             CAGAATTTGAACAAGCCGGAAGAAGCAGGAATGGGAAGAAGCTTTGGGAACAGAATCTGC
 
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JMFN013K12+           CATGGAGTCATCAAAGGATCTGCAGCAGCATTACCAGAATCACCCACTCCAGTGTTCTTC
rJMFF020E16-          CATGGAGTCATCAAAGGATCTGCAGCAGCATTACCAGAATCACCCACTCCAGTGTTCTTC
                      ____________________________________________________________
consensus             CATGGAGTCATCAAAGGATCTGCAGCAGCATTACCAGAATCACCCACTCCAGTGTTCTTC
 
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JMFN013K12+           ATCACATCATTCAAGTACTTAAGCCTTTCACTCAATTCAACTTCCTGGGCTTTTAGAACA
rJMFF020E16-          ATCACATCATTCAAGTACTTAAGCCTTTCACTCAATTCAACTTCCTGGGCTTTTAGAACA
                      ____________________________________________________________
consensus             ATCACATCATTCAAGTACTTAAGCCTTTCACTCAATTCAACTTCCTGGGCTTTTAGAACA
 
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JMFN013K12+           CTCTTCTCAATAGCCATAACCTCATACTTCTTGCTGATATCATCTATCCTACCCACAATG
rJMFF020E16-          CTCTTCTCAATAGCCATAACCTCATACTTCTTGCTGATATCATCTATCCTACCCACAATG
                      ____________________________________________________________
consensus             CTCTTCTCAATAGCCATAACCTCATACTTCTTGCTGATATCATCTATCCTACCCACAATG
 
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JMFN013K12+           GCACTATTTGCAGCCTGCAATCTCCCCACTTCCAGCGTCAACTCTTCCACGCGCTTCTGT
rJMFF020E16-          GCACTATTTGCAGCCTGCAATCTCCCCACTTCCAGCGTCAACTCTTCCACGCGCTTCTGT
JMFF020E16+                                     CACTTCCAGCGTCAACTCTTCCACGCGCTTCTGT
                      ____________________________________________________________
consensus             GCACTATTTGCAGCCTGCAATCTCCCCACTTCCAGCGTCAACTCTTCCACGCGCTTCTGT
 
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JMFN013K12+           TTCTTCATCCTTGACCTCCTCGCCGATTCCCGATTCGATATCATCCTCTTCCTCTTCTTC
rJMFF020E16-          TTCTTCATCCTTGACCTCCTCGCCGATTCCCGATTCGATATCATCCTCTTCCTCTTCTTC
JMFF020E16+           TTCTTCATCCTTGACCTCCTCGCCGATTCCCGATTCGATATCATCCTCTTCCTCTTCTTC
                      ____________________________________________________________
consensus             TTCTTCATCCTTGACCTCCTCGCCGATTCCCGATTCGATATCATCCTCTTCCTCTTCTTC
 
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JMFN013K12+           TCATCTATCCCTGCATATCTTT                                      
rJMFF020E16-          TCATCTATCCCTGCATATCTTTGATCATTCTCTGACCCAGAGCTGCTCCAACTCTGCCTC
JMFF020E16+           TCATCTATCCCTGCATATCTTTGATCATTCTCTGACCCAGAGCTGCTCCAACTCTGCCTC
                      ____________________________________________________________
consensus             TCATCTATCCCTGCATATCTTTGATCATTCTCTGACCCAGAGCTGCTCCAACTCTGCCTC
 
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rJMFF020E16-          GTACCAGACATTTTCTCTACTTTTTCTTAAATTAAACTAAAACAGATTGAATTTCTAATG
JMFF020E16+           GTACCAGACATTTTCTCTACTTTTTCTTAAATTAAACTAAAACAGATTGAATTTCTAATG
                      ____________________________________________________________
consensus             GTACCAGACATTTTCTCTACTTTTTCTTAAATTAAACTAAAACAGATTGAATTTCTAATG
 
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rJMFF020E16-          GGGTTTTTCCAGAGAAAAGGGAATCGGG                                
JMFF020E16+           GGGTTTTTCCAGAGAAAAGGGAATCGGGGATGAAATTAAGATAGACTAGATTGTGATTCT
                      ____________________________________________________________
consensus             GGGTTTTTCCAGAGAAAAGGGAATCGGGGATGAAATTAAGATAGACTAGATTGTGATTCT
 
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JMFF020E16+           CATGAAAACGTATAGAAATGATAAAGAAACACAACTGAGAAAGATTGAAGGAAACAAATG
                      ____________________________________________________________
consensus             CATGAAAACGTATAGAAATGATAAAGAAACACAACTGAGAAAGATTGAAGGAAACAAATG
 
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JMFF020E16+           CCTACCATAGATTGAACTTTTACTAGAGAAACCCAGGATTCATTTGCAAAGACTCTGCAA
                      ____________________________________________________________
consensus             CCTACCATAGATTGAACTTTTACTAGAGAAACCCAGGATTCATTTGCAAAGACTCTGCAA
 
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JMFF020E16+           AATCCCCAAAAAGATAACCAAAAACAAGCCAAAATGAAGTGATATCGGGAAATGGGTATG
                      ____________________________________________________________
consensus             AATCCCCAAAAAGATAACCAAAAACAAGCCAAAATGAAGTGATATCGGGAAATGGGTATG
 
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JMFF020E16+           TGAAAAACACGCCAAAAACCAATCTTTATGCGGAGCAAAAGAACAAAATACCAAAGATCG
                      ____________________________________________________________
consensus             TGAAAAACACGCCAAAAACCAATCTTTATGCGGAGCAAAAGAACAAAATACCAAAGATCG
 
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JMFF020E16+           AAAGTTTGGGAATTGAGAGAACTAAATGATGATGAATACGAGGAGGATTCAAGAGCGGAC
                      ____________________________________________________________
consensus             AAAGTTTGGGAATTGAGAGAACTAAATGATGATGAATACGAGGAGGATTCAAGAGCGGAC