Contig 001662:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008C05Sequence511001662 (9)gb|KHG25436.1|1e-95Tubulin beta-8 chain -like protein [Gossypium arboreum]743020150gb|KJB25806.1|2e-102hypothetical protein B456_004G210600 [Gossypium raimondii]
JMFF019F11Sequence506001662 (9)gb|KHG25436.1|5e-98Tubulin beta-8 chain -like protein [Gossypium arboreum]733001662 (9)gb|KJB25806.1|5e-115hypothetical protein B456_004G210600 [Gossypium raimondii]
JMFF019O13Sequence511001662 (9)gb|KHG25436.1|1e-96Tubulin beta-8 chain -like protein [Gossypium arboreum]695001662 (9)gb|KJB25806.1|1e-95hypothetical protein B456_004G210600 [Gossypium raimondii]
JMSF023P23Sequence647001662 (9)gb|AAA20243.1|1e-144beta-tubulin, partial [Glycine max]745001662 (9)gb|KJB25806.1|3e-113hypothetical protein B456_004G210600 [Gossypium raimondii]
JMSF049K20Sequence692001662 (9)gb|KHG25436.1|3e-132Tubulin beta-8 chain -like protein [Gossypium arboreum]691001662 (9)gb|KJB25806.1|9e-104hypothetical protein B456_004G210600 [Gossypium raimondii]

Alignment

This contig is upended


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rJMFF019O13-                                ATAGTAGAGAGAACAAATCACTTAACACAATGTAGCAA
rJMFF019F11-                                                                     A
                      ____________________________________________________________
consensus                                   ATAGTAGAGAGAACAAATCACTTAACACAATGTAGCAA
 
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rJMFF019O13-          TACTACAAGTCTACAACACAGTACCATCTCCAAAGATTATAAAAGCTAACATGTCTGGAC
rJMSF049K20-                   TCTACAACACAGTACCATCTCCAAAGATTATAAAAGCTAACATGTCTGGAC
rJMFF019F11-          TACTACAAGTCTACAACACAGTACCATCTCCAAAGATTATAAAAGCTAACATGTCTGGAC
                      ____________________________________________________________
consensus             TACTACAAGTCTACAACACAGTACCATCTCCAAAGATTATAAAAGCTAACATGTCTGGAC
 
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rJMFF019O13-          AACAACAAAAAGCTCATCCATAAGCATGGATGATGCAACATCAAACACTAGAATTCATTA
rJMSF049K20-          AACAACAAAAAGCTCATCCATAAGCATGGATGATGCAACATCAAACACTAGAATTCATTA
rJMFF019F11-          AACAACAAAAAGCTCATCCATAAGCATGGATGATGCAACATCAAACACTAGAATTCATTA
                      ____________________________________________________________
consensus             AACAACAAAAAGCTCATCCATAAGCATGGATGATGCAACATCAAACACTAGAATTCATTA
 
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rJMFF019O13-          ACATACAACAACACAACTGCTG-TTTCCAAGGAAACCAGATTGAGATGATTGCATGCTTA
rJMSF049K20-          ACATACAACAACACAACTGCTGTTTTCCAAGGAAACCAGATTGAGATGATTGCATGCTTA
rJMFF019F11-          ACATACAACAACACAACTGCTGTTTTCCAAGGAAACCAGATTGAGATGATTGCATGCTTA
                      ____________________________________________________________
consensus             ACATACAACAACACAACTGCTGTTTTCCAAGGAAACCAGATTGAGATGATTGCATGCTTA
 
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rJMFF019O13-          GGCCTCCTCCTCGTCCTGGTACTCTTCATCTTCGTATTCTTCGTCTGCAGTAGCATCCTG
rJMSF049K20-          GGCCTCCTCCTCGTCCTGGTACTCTTCATCTTCGTATTCTTCGTCTGCAGTAGCATCCTG
rJMSF023P23-                                              TTCTTCGTCTGCAGTAGCATCCTG
rJMFF019F11-          GGCCTCCTCCTCGTCCTGGTACTCTTCATCTTCGTATTCTTCGTCTGCAGTAGCATCCTG
                      ____________________________________________________________
consensus             GGCCTCCTCCTCGTCCTGGTACTCTTCATCTTCGTATTCTTCGTCTGCAGTAGCATCCTG
 
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rJMFF019O13-          GTACTGCTGGTACTCTGCCACCAAGTCATTCATATTGCTTTCGGCTTCTGTGAACTCCAT
rJMSF049K20-          GTACTGCTGGTACTCTGCCACCAAGTCATTCATATTGCTTTCGGCTTCTGTGAACTCCAT
rJMSF023P23-          GTACTGCTGGTACTCTGCCACCAAGTCATTCATATTGCTTTCGGCTTCTGTGAACTCCAT
rJMFF019F11-          GTACTGCTGGTACTCTGCCACCAAGTCATTCATATTGCTTTCGGCTTCTGTGAACTCCAT
                      ____________________________________________________________
consensus             GTACTGCTGGTACTCTGCCACCAAGTCATTCATATTGCTTTCGGCTTCTGTGAACTCCAT
 
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rJMFF019O13-          TTCATCCATTCCCTCTCCTGTGTACCAGTGCAAGAAAGCCTTCCTGCGGAACATGGCAGT
rJMSF049K20-          TTCATCCATTCCCTCTCCTGTGTACCAGTGCAAGAAAGCCTTCCTGCGGAACATGGCAGT
rJMSF023P23-          TTCATCCATTCCCTCTCCTGTGTACCAGTGCAAGAAAGCCTTCCTGCGGAACATGGCAGT
rJMFF019F11-          TTCATCCATTCCCTCTCCTGTGTACCAGTGCAAGAAAGCCTTCCTGCGGAACATGGCAGT
                      ____________________________________________________________
consensus             TTCATCCATTCCCTCTCCTGTGTACCAGTGCAAGAAAGCCTTCCTGCGGAACATGGCAGT
 
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rJMFF019O13-          GAACTGCTCGCTAACCCTCCTGAACATCTCCTGGATGGATGTGGAGTTACCAATGAATGT
rJMSF049K20-          GAACTGCTCGCTAACCCTCCTGAACATCTCCTGGATGGATGTGGAGTTACCAATGAATGT
rJMSF023P23-          GAACTGCTCGCTAACCCTCCTGAACATCTCCTGGATGGATGTGGAGTTACCAATGAATGT
rJMFF019F11-          GAACTGCTCGCTAACCCTCCTGAACATCTCCTGGATGGATGTGGAGTTACCAATGAATGT
                      ____________________________________________________________
consensus             GAACTGCTCGCTAACCCTCCTGAACATCTCCTGGATGGATGTGGAGTTACCAATGAATGT
 
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rJMFF019O13-          TGAGGCCATCTTCAGACCGATTGGTGGGATGTCACATACAGTGGATTTCACATTGTTCGG
rJMSF049K20-          TGAGGCCATCTTCAGACCGATTGGTGGGATGTCACATACAGTGGATTTCACATTGTTCGG
rJMSF023P23-          TGAGGCCATCTTCAGACCGATTGGTGGGATGTCACATACAGTGGATTTCACATTGTTCGG
rJMFF019F11-          TGAGGCCATCTTCAGACCGATTGGTGGGATGTCACATACAGTGGATTTCACATTGTTCGG
JMSF023P23+                                                                   TCGG
                      ____________________________________________________________
consensus             TGAGGCCATCTTCAGACCGATTGGTGGGATGTCACATACAGTGGATTTCACATTGTTCGG
 
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rJMFF019O13-          GATCCACTCAACAAAGTATGATGAGTTCTTGTTCTGAACGTTGATCATCTGCTCATCAAC
rJMSF049K20-          GATCCACTCAACAAAGTATGATGAGTTCTTGTTCTGAACGTTGATCATCTGCTCATCAAC
rJMSF023P23-          GATCCACTCAACAAAGTATGATGAGTTCTTGTTCTGAACGTTGATCATCTGCTCATCAAC
rJMFF019F11-          GATCCACTCAACAAAGTATGATGAGTTCTTGTTCTGAACGTTGATCATCTGCTCATCAAC
JMSF023P23+           GATCCACTCAACAAAGTATGATGAGTTCTTGTTCTGAACGTTGATCATCTGCTCATCAAC
                      ____________________________________________________________
consensus             GATCCACTCAACAAAGTATGATGAGTTCTTGTTCTGAACGTTGATCATCTGCTCATCAAC
 
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rJMFF019O13-          CTCCTTGGTGCTCATCTTGCCACGGAAGACTGCGGATGCAGTGAGATACCTGCCGTGACG
rJMSF049K20-          CTCCTTGGTGCTCATCTTGCCACGGAAGACTGCGGATGCAGTGAGATACCTGCCGTGACG
rJMSF023P23-          CTCCTTGGTGCTCATCTTGCCACGGAAGACTGCGGATGCAGTGAGATACCTGCCGTGACG
rJMFF019F11-          CTCCTTGGTGCTCATCTTGCCACGGAAGACTGCGGATGCAGTGAGATACCTGCCGTGACG
JMSF023P23+           CTCCTTGGTGCTCATCTTGCCACGGAAGACTGCGGATGCAGTGAGATACCTGCCGTGACG
                      ____________________________________________________________
consensus             CTCCTTGGTGCTCATCTTGCCACGGAAGACTGCGGATGCAGTGAGATACCTGCCGTGACG
 
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rJMFF019O13-          AGGATCAGCAGCACACATCATGTTTTTCGCATCCCACATTTGTTGGGTGAGCTCTGGG  
rJMSF049K20-          AGGATCAGCAGCACACATCATGTTTTTCGCATCCCACATTTGTTGGGTGAGCTCTGGGAC
rJMSF023P23-          AGGATCAGCAGCACACATCATGTTTTTCGCATCCCACATTTGTTGGGTGAGCTCTGGGAC
rJMFF019F11-          AGGATCAGCAGCACACATCATGTTTTTCGCATCCCACATTTGTTGGGTGAGCTCTGGGAC
JMSF023P23+           AGGATCAGCAGCACACATCATGTTTTTCGCATCCCACATTTGTTGGGTGAGCTCTGGGAC
                      ____________________________________________________________
consensus             AGGATCAGCAGCACACATCATGTTTTTCGCATCCCACATTTGTTGGGTGAGCTCTGGGAC
 
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rJMSF049K20-          AGTGAGGGCCCGGTACTGCTGTGAACCAC                               
rJMSF023P23-          AGTGAGGGCCCGGTACTGCTGTGAACCACGAGATGTAAGGGGAGCAAAGCCAACCATAAA
rJMFF019F11-          AGTGAGGGCCCGGTACTGCTGTGAACCACGAAATGTAAGGGGAGCAAAGCCAACCATAAA
JMSF023P23+           AGTGAGGGCCCGGTACTGCTGTGAACCACGAGATGTAAGGGGAGCAAAGCCAACCATAAA
                      ____________________________________________________________
consensus             AGTGAGGGCCCGGTACTGCTGTGAACCACGAGATGTAAGGGGAGCAAAGCCAACCATAAA
 
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rJMSF023P23-          GAA                                                         
rJMFF019F11-          GAA                                                         
JMSF023P23+           GAAGTGGAGCCGAGGGAAAGGAATGAGATTCACTGCCAGCTTGCGCAGATCTGAGTTGAG
                      ____________________________________________________________
consensus             GAAGTGGAGCCGAGGGAAAGGAATGAGATTCACTGCCAGCTTGCGCAGATCTGAGTTGAG
 
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JMSF023P23+           CTGACCAGGGAAGCGAAGGCAGCAAGTGACACCACTCATGGTGGCCGAGATCAAGTGATT
                      ____________________________________________________________
consensus             CTGACCAGGGAAGCGAAGGCAGCAAGTGACACCACTCATGGTGGCCGAGATCAAGTGATT
 
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JMSF023P23+           CAAATCTCCAAAGCTGGGAGTGGTGAGCTTGAGAGTGCGGAAGCAAATATCATACAAAGC
                      ____________________________________________________________
consensus             CAAATCTCCAAAGCTGGGAGTGGTGAGCTTGAGAGTGCGGAAGCAAATATCATACAAAGC
 
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JMSF023P23+           CTCATTATCCAACACCATACACTCATCCGCATTTTCAACCAGCTGATGCACTGAGAGCGT
JMSF049K20+                      ACACCATACANTCATCCGCATTTTCAACCAGCTGATGCACTGAGAGCGT
                      ____________________________________________________________
consensus             CTCATTATCCAACACCATACACTCATCCGCATTTTCAACCAGCTGATGCACTGAGAGCGT
 
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JMSF023P23+           CGCGTTGTAAGGCTCCACCACCGTGTCGGACACCTTGGGCGATGGAAACACCGAGAAAGT
JMSF049K20+           CGCGTTGTAAGGCTCCACCACCGTGTCGGACACCTTGGGCGATGGAAACACCGAGAAAGT
                      ____________________________________________________________
consensus             CGCGTTGTAAGGCTCCACCACCGTGTCGGACACCTTGGGCGATGGAAACACCGAGAAAGT
 
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JMSF023P23+           CAGCATCATCCGGTCAGGGTATTCCTCCCTTATCTTTGATATCAACAGTGTCCCCATACC
JMSF049K20+           CAGCATCATCCGGTCAGGGTATTCCTCCCTTATCTTTGATATCAACAGTGTCCCCATACC
JMFF008C05+                                        TTATCTTTGATATCAACAGTGTCCCCATACC
JMFF019O13+                                        TTATCTTAGATATCAACAGTGTCCCCATACC
                      ____________________________________________________________
consensus             CAGCATCATCCGGTCAGGGTATTCCTCCCTTATCTTTGATATCAACAGTGTCCCCATACC
 
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JMSF023P23+           CGACCCGGTTCCTCCTCCCAGAGAATGACATACTTGAAACCC                  
JMSF049K20+           CGACCCGGTTCCTCCTCCCAGAGAATGACATACTTGAAACCCTTGGAGACAATCGCAGTT
JMFF008C05+           CGACCCGGTTCCTCCTCCCAGAGAATGACATACTTGAAACCCTTGGAGACAATCGCAGTT
JMFF019F11+                          TCCCAGAGAATGACATACTTGAAACCCTTGGAGACAATCGCAGTT
JMFF019O13+           CGACCCGGTTCCTCCTCCCAGAGAATGACATACTTGAAACCCTTGGAGACAATCGCAGTT
                      ____________________________________________________________
consensus             CGACCCGGTTCCTCCTCCCAGAGAATGACATACTTGAAACCCTTGGAGACAATCGCAGTT
 
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JMSF049K20+           CTCGGCCTCTTTGCGGACGACATCGAGAACAGAGTCGATGAGCTCAGCGCCCTCAGTGTA
JMFF008C05+           CTCGGCCTCTTTGCGGACGACATCGAGAACAGAGTCGATGAGCTCAGCGCCCTCAGTGTA
JMFF019F11+           CTCGGCCTCTTTGCGGACGACATCGAGAACAGAGTCGATGAGCTCAGCGCCCTCAGTGTA
JMFF019O13+           CTCGGCCTCTTTGCGGACGACATCGAGAACAGAGTCGATGAGCTCAGCGCCCTCAGTGTA
                      ____________________________________________________________
consensus             CTCGGCCTCTTTGCGGACGACATCGAGAACAGAGTCGATGAGCTCAGCGCCCTCAGTGTA
 
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JMSF049K20+           GTGTCCCTTGGCCCAGTTGTTGCCGGCGCCGGACTGGCCGAAGACGAAGTTGTCAGGGCG
JMFF008C05+           GTGTCCCTTGGCCCAGTTGTTGCCGGCGCCGGACTGGCCGAAGACGAAGTTGTCAGGGCG
JMFF019F11+           GTGTCCCTTGGCCCAGTTGTTGCCGGCGCCGGACTGGCCGAAGACGAAGTTGTCAGGGCG
JMFF019O13+           GTGTCCCTTGGCCCAGTTGTTGCCGGCGCCGGACTGGCCGAAGACGAAGTTGTCAGGGCG
                      ____________________________________________________________
consensus             GTGTCCCTTGGCCCAGTTGTTGCCGGCGCCGGACTGGCCGAAGACGAAGTTGTCAGGGCG
 
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JMSF049K20+           GAAGATCTGGCCGTAGGGGCCGGAGCGGACGGAGTCCATGGTGCCAGGCTCGAGATCCAT
JMFF008C05+           GAAGATCTGGCCGTAGGGGCCGGAGCGGACGGAGTCCATGGTGCCAGGCTCGAGATCCAT
JMFF019F11+           GAAGATCTGGCCGTAGGGGCCGGAGCGGACGGAGTCCATGGTGCCAGGCTCGAGATCCAT
JMFF019O13+           GAAGATCTGGCCGTAGGGGCCGGAGCGGACGGAGTCCATGGTGCCAGGCTCGAGATCCAT
                      ____________________________________________________________
consensus             GAAGATCTGGCCGTAGGGGCCGGAGCGGACGGAGTCCATGGTGCCAGGCTCGAGATCCAT
 
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JMSF049K20+           GAGGACGGCGCGGGGGACGAAGCGGCCGCAGCTAGCCTCGTTGTAGTAGACGTTGACGCG
JMFF008C05+           GAGGACGGCGCGGGGGACGAAGCGGCCGCAGCTAGCCTCGTNGTAGTAGACGTTGACGCG
JMFF019F11+           GAGGACGGCGCGGGGGACGAAGCGGCCGCAGCTAGCCTCGTTGTAGTAGACGTTGACGCG
JMFF019O13+           GAGGACGGCGCGGGGGACGAAGCGGCCGCAGCTAGCCTCGTTGTAGTAGACGTTGACGCG
                      ____________________________________________________________
consensus             GAGGACGGCGCGGGGGACGAAGCGGCCGCAGCTAGCCTCGTTGTAGTAGACGTTGACGCG
 
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JMSF049K20+           CTCGAGCTGGAGATCGGAGTCGCCATGGTAGCGGCCGGTGGAGTCGATCCCGTGCTCGGC
JMFF008C05+           CTCGAGCTGGAGATCGGAGTCGCCATGGTAGCGGCCGGTGGAGTCGATCCCGTGCTCGGC
JMFF019F11+           CTCGAGCTGGAGATCGGAGTCGCCATGGTAGCGGCCGGTGGAGTCGATCCCGTGCTCGGC
JMFF019O13+           CTCGAGCTGGAGATCGGAGTCGCCATGGTAGCGGCCGGTGGAGTCGATCCCGTGCTCGGC
                      ____________________________________________________________
consensus             CTCGAGCTGGAGATCGGAGTCGCCATGGTAGCGGCCGGTGGAGTCGATCCCGTGCTCGGC
 
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JMSF049K20+           GCAGACCACCTCCCAGAACTTGGCTCCGATCTGGTTGCCGCATTGGCCGCCTTGGATGTG
JMFF008C05+           GCAGACCACCTCCCAGAACTTGGCTCCGATCTGGTTGCCGCATTGGCCGCCTTGGATGTG
JMFF019F11+           GCAGACCACCTCCCAGAACTTGGCTCCGATCTGGTTGCCGCATTGGCCGCCTTGGATGTG
JMFF019O13+           GCAGACCACCTCCCAGAACTTGGCTCCGATCTGGTTGCCGCATTGGCCGCCTTGGATGTG
                      ____________________________________________________________
consensus             GCAGACCACCTCCCAGAACTTGGCTCCGATCTGGTTGCCGCATTGGCCGCCTTGGATGTG
 
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JMSF049K20+           AAGAATCTCGCGCAT                                             
JMFF008C05+           AAGAATCTCGCGCATTTTGGTCGGAGACGGAGGAGAGAGATTGGGGGAAAAGTAGAGAGT
JMFF019F11+           AAGAATCTCGCGCAT                                             
JMFF019O13+           AAGAATCTCGCGCATTTTGGTCGGAGACGGAGGAGAGAGATTGGGGGAAAAGTAGAGAGT
                      ____________________________________________________________
consensus             AAGAATCTCGCGCATTTTGGTCGGAGACGGAGGAGAGAGATTGGGGGAAAAGTAGAGAGT