Contig 001655:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018N13Sequence573001655 (2)ref|XP_009598807.1|4e-23PREDICTED: cysteine-rich receptor-like protein kinase 10 isoform X1 [Nicotiana 757008646 (2)ref|XP_009598808.1|9e-84PREDICTED: cysteine-rich receptor-like protein kinase 25 isoform X2 [Nicotiana
JMSF035I09Sequence676001655 (2)ref|XP_009777401.1|7e-34PREDICTED: cysteine-rich receptor-like protein kinase 25 isoform X1 [Nicotiana 722024633gb|KCW75002.1|1e-24hypothetical protein EUGRSUZ_E03765 [Eucalyptus grandis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035I09+                                                     ATCGAAGTCAGTTTCTTG
                      ____________________________________________________________
consensus                                                       ATCGAAGTCAGTTTCTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035I09+           AGTAGCAAATTTCTTGCCGGATCGATCGCCGGCGGCCGCTCGAGTAGTCAGCTGACCAAA
                      ____________________________________________________________
consensus             AGTAGCAAATTTCTTGCCGGATCGATCGCCGGCGGCCGCTCGAGTAGTCAGCTGACCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035I09+           TGCCATTCCGGCCACCCACGTGAGCTTAGTTTGGTCAGAAGCGTTCTGTTTATTCAACAA
                      ____________________________________________________________
consensus             TGCCATTCCGGCCACCCACGTGAGCTTAGTTTGGTCAGAAGCGTTCTGTTTATTCAACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035I09+           ATTTAACCAGACCGATTGGTCGGCTCTCCCGAACATAGACTTGTCCGAGTAACGCAACAT
JMFF018N13+                                      CCCGAACATAGACTTGTCCGAGTAACGCAACAT
                      ____________________________________________________________
consensus             ATTTAACCAGACCGATTGGTCGGCTCTCCCGAACATAGACTTGTCCGAGTAACGCAACAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035I09+           ACAGAAATCGTACCAGATAATAGCAGTCTTTTGTTTGGGGCATATCTGCAATATATATGC
JMFF018N13+           ACAGAAATCGTACCAGATAATAGCAGTCTTTTGTTTGGGGCATATCTGCAATATATATGC
                      ____________________________________________________________
consensus             ACAGAAATCGTACCAGATAATAGCAGTCTTTTGTTTGGGGCATATCTGCAATATATATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035I09+           GCTAGCATCTTTCACACACACCTCGCAGTCGCGGGTTGAAATATCACCGCGACACATGAA
JMFF018N13+           GCTAGCATCTTTCACACACACCTCGCAGTCGCGGGTTGAAATATCACCGCGACACATGAA
                      ____________________________________________________________
consensus             GCTAGCATCTTTCACACACACCTCGCAGTCGCGGGTTGAAATATCACCGCGACACATGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035I09+           CACGCCGTACACGGTGGTGTCTCGATCACTGCCGGCGGTGAATTTGTAGAAACCATCGTC
JMFF018N13+           CACGCCGTACACGGTGGTGTCTCGATCACTGCCGGCGGTGAATTTGTAGAAACCATCGTC
                      ____________________________________________________________
consensus             CACGCCGTACACGGTGGTGTCTCGATCACTGCCGGCGGTGAATTTGTAGAAACCATCGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035I09+           ACGGTTGGCGTTGGAAGAAAGAGTGGATAGAAGAGAATTAAGATTGGCCTGATAAGTAGA
JMFF018N13+           ACGGTTGGCGTTGGAAGAAAGAGTGGATAGAAGAGAATTAAGATTGGCCTGATAAGTAGA
                      ____________________________________________________________
consensus             ACGGTTGGCGTTGGAAGAAAGAGTGGATAGAAGAGAATTAAGATTGGCCTGATAAGTAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035I09+           GGTGTTAGGAGCATAAGTAGAGTTGTTGGGACAAATGTGTCCGAGAGGTTGGGAGGTAGT
JMFF018N13+           GGTGTTAGGAGCATAAGTAGAGTTGTTGGGACAAATGTGTCCGAGAGGTTGGGAGGTAGT
                      ____________________________________________________________
consensus             GGTGTTAGGAGCATAAGTAGAGTTGTTGGGACAAATGTGTCCGAGAGGTTGGGAGGTAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035I09+           TCCGATGAAGAAGAAGCAGAAGCAGAAGCAGAGGATGTAGTAGTAGGCTAACACAAAGCG
JMFF018N13+           TCCGATGAAGAAGAAGCAGAAGCAGAAGCAGAGGATGTAGTAGTAGGCTAACACAAAGCG
                      ____________________________________________________________
consensus             TCCGATGAAGAAGAAGCAGAAGCAGAAGCAGAGGATGTAGTAGTAGGCTAACACAAAGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035I09+           TCCAATCGGAGGATGCATCATACCAACAAATATACTCTCATCTCCATGTAATTTTGATTT
JMFF018N13+           TCCAATCGGAGGATGCATCATACCAACAAAAATACTCTCATCTCCATGTAATTTTGATTT
                      ____________________________________________________________
consensus             TCCAATCGGAGGATGCATCATACCAACAAATATACTCTCATCTCCATGTAATTTTGATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035I09+           GTTAAAATGATAGACGATGGTACGTGTTTATTCAGTGATCAGAGGATCGGAGTTGA    
JMFF018N13+           GTTAAAATGATAGACGATGGTACGTGTTTATTCAGTGATCAGAGGATCGGAGTTGATGAT
                      ____________________________________________________________
consensus             GTTAAAATGATAGACGATGGTACGTGTTTATTCAGTGATCAGAGGATCGGAGTTGATGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF018N13+           GATAATTGATATGATGGAGCAAAAATATATGGACATTCGATCGGAAGAAGCTATGTATGT
                      ____________________________________________________________
consensus             GATAATTGATATGATGGAGCAAAAATATATGGACATTCGATCGGAAGAAGCTATGTATGT